ライフサイエンスコーパス: transcriptional regulatory network

1 istinct transcriptional profile and a unique transcriptional regulatory network.

2 ion time series to delineate the Th17 global transcriptional regulatory network.

3 a is a powerful method for understanding the transcriptional regulatory network.

4 on factor to DNA is the central event in any transcriptional regulatory network.

5 molecular rheostat for the control of a key transcriptional regulatory network.

6 and from this we reconstructed a functional transcriptional regulatory network.

7 providing a quantitative description of the transcriptional regulatory network.

8 odels propose that v-rel disrupts the normal transcriptional regulatory network.

9 rated analyses of copy number alteration and transcriptional regulatory network.

10 representation of the organism's underlying transcriptional regulatory network.

11 e roots (SRs) are intricately regulated by a transcriptional regulatory network.

12 is crucial for understanding the dynamics of transcriptional regulatory network.

13 ed regulation and the context-dependent post-transcriptional regulatory network.

14 y play an important role in the evolution of transcriptional regulatory networks.

15 m of discovering the underlying hierarchy in transcriptional regulatory networks.

16 n is hampered by our incomplete knowledge of transcriptional regulatory networks.

17 The regulatory relations are modeled using transcriptional regulatory networks.

18 ous study were superposed with the resulting transcriptional regulatory networks.

19 ultiple transcription factors in large-scale transcriptional regulatory networks.

20 same global protein-protein interaction and transcriptional regulatory networks.

21 gnaling pathways and their intersection with transcriptional regulatory networks.

22 icroarray and TF binding data for unraveling transcriptional regulatory networks.

23 ns, microbial organisms have evolved complex transcriptional regulatory networks.

24 expression rely on transcriptional and post-transcriptional regulatory networks.

25 ion factors is fundamental for understanding transcriptional regulatory networks.

26 clear hormone receptors and their associated transcriptional regulatory networks.

27 operties, and a novel interactive display of transcriptional regulatory networks.

28 hypotheses that further our understanding of transcriptional regulatory networks.

29 cription factors is important in deciphering transcriptional regulatory networks.

30 and regulatory functions within complex post-transcriptional regulatory networks.

31 informatics tools in assisting in unraveling transcriptional regulatory networks.

32 e expression is under the control of several transcriptional regulatory networks.

33 data and gene expression data to reconstruct transcriptional regulatory networks.

34 lled by environmental signals acting through transcriptional regulatory networks.

35 d the way for genome-scale reconstruction of transcriptional regulatory networks.

36 We extend our network analysis to encompass transcriptional regulatory networks.

37 ral approach for building detailed models of transcriptional regulatory networks.

38 pment of methods that use this data to infer transcriptional regulatory networks.

39 connectivity information for the underlying transcriptional regulatory networks.

40 uable tools for systems-level exploration of transcriptional regulatory networks.

41 x-sensitive signal transduction pathways and transcriptional regulatory networks.

42 ary precursors and are regulated by distinct transcriptional regulatory networks.

43 stinct cell populations and infer underlying transcriptional regulatory networks.

44 fic cell states, as well as to study natural transcriptional regulatory networks.

45 type composition, gene expression, and core transcriptional regulatory networks.

46 d regulatory programs that can be modeled as transcriptional regulatory networks.

47 UTR formation and its consequences for post-transcriptional regulatory networks.

48 ation is an essential step in elucidation of transcriptional regulatory networks.

49 have implications for studying genome-scale transcriptional regulatory networks.

50 responses to fluctuating P levels via global transcriptional regulatory networks.

51 molecular level and its role in genome-wide transcriptional regulatory networks.

52 taneously infer the transcriptional and post-transcriptional regulatory networks.

53 additional substrates for known enzymes, and transcriptional regulatory networks.

54 iterature-curated Boolean models and diverse transcriptional regulatory networks.

55 remain largely untapped for the analysis of transcriptional regulatory networks.

56 organisms will improve our understanding of transcriptional regulatory networks across biology.

57 Transcriptional regulatory networks allow bacteria to ex

58 We also demonstrate, using transcriptional regulatory-network analyses, genetic int

59 In addition, brain transcriptional regulatory network analysis revealed a p

60 TBX5 induces profound changes in the atrial transcriptional regulatory network and epigenetic state

61 vides a resource for deciphering the cardiac transcriptional regulatory network and gaining insights

62 tory network is similar in complexity to the transcriptional regulatory network and is thought to be

63 useful approach that leverages an integrated transcriptional regulatory network and metabolic network

64 bridges the connection between steps in the transcriptional regulatory network and other networks (e

65 hensively reconstruct the genome-wide GadEWX transcriptional regulatory network and RpoS involvement

66 was intricately woven within the T(H)17 cell transcriptional regulatory network and showed high inter

67 te central nervous system requires a complex transcriptional regulatory network and signaling process

68 des a powerful method to examine genome-wide transcriptional regulatory networks and can be potential

69 Moreover, transcriptional regulatory networks and electronic circu

70 single-cell technologies that enable genes, transcriptional regulatory networks and epigenetic lands

71 sults suggest an unappreciated complexity of transcriptional regulatory networks and highlight the fu

72 fferentiation, and our results have revealed transcriptional regulatory networks and new factors (eg,

73 Here we review the properties of transcriptional regulatory networks and the rapidly evol

74 one of the preliminary steps to reconstruct transcriptional regulatory networks and to identify sign

75 ication of regulatory elements, for defining transcriptional regulatory networks, and for screening f

76 The key components of a transcriptional regulatory network are the connections b

77 Transcriptional regulatory networks are fine-tuned syste

78 Transcriptional regulatory networks are one of the mecha

79 metabolic, protein-protein interaction, and transcriptional regulatory networks are used differentia

80 a scaffold for describing the Synechocystis transcriptional regulatory network as well as efficient

81 ion factor in E. histolytica that controls a transcriptional regulatory network associated with oxida

82 ic miRNA expression patterns are achieved by transcriptional regulatory networks at different develop

83 ormation that can help the identification of transcriptional regulatory networks at the full genome s

84 s not been unequivocally traced, nor has its transcriptional regulatory network been fully clarified.

85 I also compare and contrast the transcriptional regulatory networks between the two yeas

86 ressive mammary cell aging and elucidate the transcriptional regulatory network bridging mammary agin

87 udies are uncovering not only the underlying transcriptional regulatory networks, but also how these

88 intracellular events, such as metabolic and transcriptional regulatory networks, but not in dynamic

89 zed Gaussian Graphical Model, we construct a transcriptional regulatory network by integrating public

90 derstanding the organization and function of transcriptional regulatory networks by analyzing high-th

91 t microRNAs provide phenotypic robustness to transcriptional regulatory networks by buffering fluctua

92 hancers, as well as placing enhancers within transcriptional regulatory networks by integrating ENCOD

93 We constructed developmental stage-specific transcriptional regulatory networks by linking enhancers

94 ossible information-processing tasks which a transcriptional regulatory network can realize.

95 Our analysis suggests that transcriptional regulatory networks can be identified us

96 Changes in transcriptional regulatory networks can significantly al

97 nduces persistent alterations in genome-wide transcriptional regulatory networks, chromatin remodelin

98 For example, transcriptional regulatory networks consist of interacti

99 e have reconstructed the nutrient-controlled transcriptional regulatory network controlling metabolis

100 However, transcriptional regulatory networks controlling brush bo

101 Transcriptional regulatory networks controlling cell fat

102 ized that the rlrA locus has integrated into transcriptional regulatory networks controlling expressi

103 tors, thus inducing epigenetic repression of transcriptional regulatory networks controlling neuronal

104 Drosophila has demonstrated that reasonable transcriptional regulatory network diagrams representing

105 Transcriptional regulatory networks direct the developme

106 SCL28 is part of a transcriptional regulatory network downstream of the cen

107 important integrated component of the master transcriptional regulatory network driving aberrant tran

108 h to define the functional correlates of the transcriptional regulatory network driving the early res

109 ministration, we reverse engineered a global transcriptional regulatory network during protracted abs

110 rial biology and involves dynamic shaping of transcriptional regulatory networks during evolution.

111 events and to improve understanding of post-transcriptional regulatory networks during mouse lens de

112 Our results illustrate how maize transcriptional regulatory networks enable changes in tr

113 The evolution of transcriptional regulatory networks entails the expansio

114 The first is based on transcriptional regulatory network events, the second is

115 Identifying the complete transcriptional regulatory network for an organism is a

116 Unraveling the transcriptional regulatory network for inducing cardiomy

117 The data were assembled into a transcriptional regulatory network for podocyte developm

118 address these questions, we characterized a transcriptional regulatory network for the metastasis su

119 this problem by using the largest assembled transcriptional regulatory network for yeast.

120 is an integrative resource for constructing transcriptional regulatory networks for diverse plant sp

121 construction of the integrated metabolic and transcriptional regulatory networks for Escherichia coli

122 n models, which can inform the prediction of transcriptional regulatory networks for extant HDs or th

123 t consequences for accurately reconstructing transcriptional regulatory networks, for motif discovery

124 oarray and promoter sequence data to infer a transcriptional regulatory network from the response to

125 ory modules will be a key step in assembling transcriptional regulatory networks from gene expression

126 critical step in our ability to reconstruct transcriptional regulatory networks from gene expression

127 g transcription factor DNA binding sites and transcriptional regulatory networks from RegulonDB.

128 zed in 3-dimensional space, showing that the transcriptional regulatory network governing metabolism

129 re that allows obtaining alternative genomic transcriptional regulatory network (GTRN) that still mai

130 genes encoding several key components of the transcriptional regulatory network has an important role

131 The structure of complex transcriptional regulatory networks has been studied ext

132 The evolution of transcriptional regulatory networks has thus far mostly

133 Few transcriptional regulatory networks have been described

134 We show that prokaryotic transcriptional regulatory networks have evolved princip

135 Discovering transcriptional regulatory networks helps us to understa

136 well-characterized abiotic stress-associated transcriptional regulatory networks (i.e. ORYZA SATIVA D

137 Constructing transcriptional-regulatory networks identified the trans

138 Elucidating the transcriptional regulatory network immediately downstrea

139 that RKIP is a novel component of the Snail transcriptional regulatory network important for the pro

140 ed the call graph, which is analogous to the transcriptional regulatory network in a cell.

141 way to full bottom-up reconstruction of the transcriptional regulatory network in bacterial cells.

142 the role of LRG1 in cardiac fibrosis and its transcriptional regulatory network in cardiac fibroblast

143 Here we comprehensively reconstruct the Fur transcriptional regulatory network in Escherichia coli K

144 econstruct networks with the topology of the transcriptional regulatory network in Escherichia coli w

145 nt advancements have revealed a complex post-transcriptional regulatory network in humans involving m

146 f their selective functional activity in the transcriptional regulatory network in mouse but not huma

147 The transcriptional regulatory network in prokaryotes contro

148 1 as a key functional target of NRL-centered transcriptional regulatory network in rod photoreceptors

149 sources, we created an extensive map of the transcriptional regulatory network in Saccharomyces cere

150 ignalling pathway, which cooperates with the transcriptional regulatory network in sustaining ESC sel

151 The RIViT-seq data expands the transcriptional regulatory network in this bacterium, di

152 perone Hfq drafts an unexpectedly large post-transcriptional regulatory network in this organism, com

153 rigenesis through a SOX9 and FOXG1-dependent transcriptional regulatory network in vitro and in vivo.

154 ecause the best and most extensively studied transcriptional regulatory network in Xenopus is that un

155 fy many widely expressed factors that impact transcriptional regulatory networks in a cell-selective

156 genomic sequences to reconstruct and analyze transcriptional regulatory networks in Bacteria, but the

157 g regulatory networks can be interlaced with transcriptional regulatory networks in eukaryotic gene e

158 f TF interactions may help to understand the transcriptional regulatory networks in eukaryotic system

159 ramework for discovering and dissecting post-transcriptional regulatory networks in human cells.

160 annotations greatly expand the scope of post-transcriptional regulatory networks in mammals, and have

161 arget sequences is pivotal to fully annotate transcriptional regulatory networks in metazoan genomes.

162 This approach may be useful for modeling transcriptional regulatory networks in more complex euka

163 he important intra-species diversity in post-transcriptional regulatory networks in Pseudomonas aerug

164 setting the foundations for dissecting post-transcriptional regulatory networks in stem cells.

165 dent relationship between the UME6 and NDT80 transcriptional regulatory networks in the meiotic gene

166 emonstrated through its application to infer transcriptional regulatory networks in the yeast cell cy

167 identifying new cis regulatory elements and transcriptional regulatory networks in various genomes.

168 is article, we develop and apply methods for transcriptional regulatory network inference from divers

169 We have developed a computational method for transcriptional regulatory network inference, CARRIE (Co

170 These findings uncover a novel transcriptional regulatory network influencing Drosophil

171 is known about how they are integrated with transcriptional regulatory networks into coherent gene e

172 Decomposing transcriptional regulatory networks into functional modu

173 ant challenge, lagging behind predictions of transcriptional regulatory networks into which they ofte

174 osttranslationally control components of the transcriptional regulatory network involved in the iron

175 Our observations delineate a novel post-transcriptional regulatory network involving carbohydrat

176 Elucidating the human transcriptional regulatory network is a challenge of the

177 TX (KDM6a) We propose that an NKX3.1-G9a-UTY transcriptional regulatory network is essential for pros

178 ce, the components and dynamics of the HoxB4 transcriptional regulatory network is poorly understood,

179 The post-transcriptional regulatory network is similar in complex

180 revisiae, the results suggest that the yeast transcriptional regulatory network is very sparse, conta

181 ip between gene duplication and evolution of transcriptional regulatory networks is largely unexplore

182 The objective of identifying transcriptional regulatory networks is to provide insigh

183 ast cellular transformation, we describe the transcriptional regulatory network mediated by STAT3, NF

184 r Anchored Independent Labeling identified a transcriptional regulatory network mediated by the neuro

185 In this review, we discuss a transcriptional regulatory network model for AF defined

186 kit to generate a computationally executable transcriptional regulatory network model of blood develo

187 This approach allowed us to infer transcriptional regulatory network models that recapitul

188 nciples, we present a comparison between the transcriptional regulatory network of a well-studied bac

189 An important step in unravelling the transcriptional regulatory network of an organism is to

190 ify Foxp1 as an essential participant in the transcriptional regulatory network of B lymphopoiesis.

191 We use the known transcriptional regulatory network of Escherichia coli t

192 Here we use the transcriptional regulatory network of Escherichia coli t

193 Switching is controlled by a transcriptional regulatory network of interlocking feedb

194 Our findings provide new insight into the transcriptional regulatory network of NKX2-1 and suggest

195 on factor 4 (Oct3/4) is a master gene in the transcriptional regulatory network of pluripotent cells.

196 The main idea is to use the known transcriptional regulatory network of reference organism

197 The generated transcriptional regulatory network of the gingival inter

198 Characterization of the transcriptional regulatory network of the normal cell cy

199 Remarkably, the transcriptional regulatory network of the SMAD2 promoter

200 stributed architecture behind the scale-free transcriptional regulatory network of yeast by applying

201 transcriptome, we obtained insights into the transcriptional regulatory networks of AP-1 in TNBC cell

202 We found that the transcriptional regulatory networks of both Saccharomyce

203 uld greatly facilitate our effort to unravel transcriptional regulatory networks of diverse cell type

204 We use our method to analyze the transcriptional regulatory networks of E. coli, H. sapie

205 We apply this approach to the transcriptional regulatory networks of Escherichia coli

206 First, from the experimentally verified transcriptional regulatory networks of Escherichia coli,

207 We explore the transcriptional regulatory networks of mesenchymal-assoc

208 We are beginning to elucidate transcriptional regulatory networks on a large scale and

209 In this study, we describe a core PPARGC1A transcriptional regulatory network operating in HepG2 ce

210 tic gene expression by targeting three major transcriptional regulatory networks: peroxisome prolifer

211 l layout, but there is a key difference: The transcriptional regulatory network possesses a few globa

212 e full yeast protein-protein interaction and transcriptional regulatory networks, protein hubs with m

213 ortunistic fungal pathogen Candida albicans, transcriptional regulatory networks regulate epigenetic

214 factor binding provide one view of potential transcriptional regulatory networks, regulation also occ

215 r VegT that are components of an established transcriptional regulatory network required for mesendod

216 This analysis defined a transcriptional regulatory network required for the expr

217 Establishing transcriptional regulatory networks requires knowledge o

218 Both the MRTF-SRF and the YAP-TEAD transcriptional regulatory networks respond to extracell

219 Interaction of the Csr system with transcriptional regulatory networks results in a variety

220 Genome-wide mapping of the XBP1 transcriptional regulatory network revealed that XBP1 dr

221 Finally, our transcriptional regulatory network reveals the transcrip

222 cific genes and support its proposed role in transcriptional regulatory network(s) during rod differe

223 Analysis of transcriptional regulatory networks showed that this cla

224 We show here that a Hox transcriptional regulatory network specifies motor neuro

225 Transcriptional regulatory networks specify regulatory p

226 Transcriptional regulatory networks specify the interact

227 These findings provide key insights into the transcriptional regulatory network specifying this still

228 nisms to gain a rapid understanding of their transcriptional regulatory network structure and conditi

229 tomated process can use motifs to assemble a transcriptional regulatory network structure.

230 egulation, implying a much more complex post-transcriptional regulatory network than is currently kno

231 This process involves the action of a transcriptional regulatory network that builds and maint

232 , and an interactive visualization of a full transcriptional regulatory network that can be painted w

233 rms the foundation for a complete map of the transcriptional regulatory network that controls the cel

234 reover, we identified the key components and transcriptional regulatory network that determine root d

235 sed to measure the dynamics of any bacterial transcriptional regulatory network that is affected by i

236 ome assembly and function is controlled by a transcriptional regulatory network that is induced by FA

237 We define an IEC transcriptional regulatory network that is shared betwee

238 Our studies place FoxO4 in the center of a transcriptional regulatory network that links gene trans

239 activity, and provides an initial map of the transcriptional regulatory network that underlies the ho

240 es (TAMs), caused a global rewiring of their transcriptional regulatory network that was skewed towar

241 sed open chromatin profiling to decipher the transcriptional regulatory networks that are operational

242 This information is necessary for defining transcriptional regulatory networks that contribute to c

243 tionary context, to provide new insight into transcriptional regulatory networks that control photosy

244 Transcriptional regulatory networks that control the mor

245 Cell identity in eukaryotes is controlled by transcriptional regulatory networks that define cell-typ

246 gy have made possible the study of intricate transcriptional regulatory networks that describe gene e

247 y controlled, however, little is known about transcriptional regulatory networks that effect gene exp

248 em and, thus, integrate Elf-4 into the wider transcriptional regulatory networks that govern hematopo

249 Here we review emerging data on transcriptional regulatory networks that govern the diff

250 Cancer cells exhibit rewired transcriptional regulatory networks that promote tumor g

251 ge characteristic genes to better define the transcriptional regulatory networks that regulate chondr

252 function studies to build a new model of the transcriptional regulatory networks that specify 5-HT ne

253 The transcriptional regulatory networks that specify and mai

254 ific neuronal populations can illuminate the transcriptional regulatory networks that underlie neuron

255 ell-types and identify impacted pathways and transcriptional regulatory networks to understand the im

256 Paired scRNAseq and scATACseq followed by transcriptional regulatory network (TRN) analysis identi

257 ltiplex), we study the joint organization of transcriptional regulatory network (TRN) and protein-pro

258 Both IRF6 and GRHL3 function in a transcriptional regulatory network (TRN) governing diffe

259 Despite its significance, the transcriptional regulatory network (TRN) governing its s

260 Its transcriptional regulatory network (TRN) is of fundament

261 eurogenomic states, we reconstructed a brain transcriptional regulatory network (TRN) model.

262 The transcriptional regulatory network (TRN) of Bacillus sub

263 The transcriptional regulatory network (TRN) of E. coli cons

264 The transcriptional regulatory network (TRN) of Pseudomonas

265 derlying nonlinear dynamical system (NDS) of transcriptional regulatory network (TRN) processes.

266 ent tissue sites is enabled, in part, by its transcriptional regulatory network (TRN) that coordinate

267 Underlying cellular responses is a transcriptional regulatory network (TRN) that modulates

268 y datasets helps infer a mutually consistent transcriptional regulatory network (TRN) with strong sim

269 we initiated a search of large databases of transcriptional regulatory network (TRN), protein-protei

270 the iron response through an interconnected transcriptional regulatory network (TRN).

271 Reverse engineering of transcriptional regulatory networks (TRN) from genomics

272 plored relationships between RT networks and transcriptional regulatory networks (TRNs) by combining

273 Current efforts to reconstruct transcriptional regulatory networks (TRNs) focus primari

274 Modeling of transcriptional regulatory networks (TRNs) has been incr

275 Analysis of the topology of transcriptional regulatory networks (TRNs) is an effecti

276 Identification of transcriptional regulatory networks (TRNs) is of signifi

277 Although the structure of transcriptional regulatory networks (TRNs) is well under

278 Transcriptional regulatory networks (TRNs) program cells

279 Transcriptional regulatory networks (TRNs) provide insig

280 n response to environmental stimuli, yet the transcriptional regulatory networks (TRNs) that control

281 In transcriptional regulatory networks (TRNs), a canonical

282 o their environment is controlled by complex transcriptional regulatory networks (TRNs), which are st

283 Here, we systematically studied three-node transcriptional regulatory networks (TRNs), with three d

284 on to adapt to changing environments through transcriptional regulatory networks (TRNs).

285 pond to changes in their environment through transcriptional regulatory networks (TRNs).

286 However, our understanding of the transcriptional regulatory networks underlying early sta

287 factors is important for reconstructing the transcriptional regulatory networks underlying global ge

288 Our results reveal that a core transcriptional regulatory network used for directing ce

289 In this regard, analysis of a S. cerevisiae transcriptional regulatory network using our method show

290 e have hypothesized that the construction of transcriptional regulatory networks using a method that

291 a causal inference approach for constructing transcriptional regulatory networks using gene expressio

292 UTR annotations permit reassessment of post-transcriptional regulatory networks, via conserved miRNA

293 To examine the principles of the human transcriptional regulatory network, we determined the ge

294 Leaf- and stem-dependent transcriptional regulatory networks were also developed

295 s induced by VEGFA yielded a VEGFA-regulated transcriptional regulatory network, which revealed that

296 The identification of transcriptional regulatory networks, which control tissu

297 g accurate predictions is the integration of transcriptional regulatory networks with the correspondi

298 he cross-talk between signaling pathways and transcriptional regulatory networks within cells are ess

299 y would facilitate predictive models of many transcriptional regulatory networks within these genomes

300 ), introduce a range of complex behaviors to transcriptional regulatory networks, yet such properties