ライフサイエンスコーパス: transposable

1 In addition, assay for transposable accessible chromatin by high throughput seq

2 ENs) that are enriched with species-specific transposable and repetitive DNA elements.

3 acterial populations through transmission by transposable bacteriophages.

4 n tandemly repeated cis sequences flanking a transposable element (a miniature inverted repeat transp

5 The insertion is a miniature inverted repeat transposable element (MITE) that contains two additional

6 found that Tourist-miniature inverted-repeat transposable element (MITE)-derived small interfering RN

7 production can either facilitate or restrain transposable element (TE) accumulation by providing TEs

8 eages have experienced differential rates of transposable element (TE) accumulation, which would be p

9 The regulation of transposable element (TE) activity by small RNAs is a ub

10 Transposable element (TE) activity is repressed in anima

11 In contrast, transposable element (TE) annotations are rudimentary, c

12 tion is frequently associated with increased transposable element (TE) content.

13 Transposable element (TE) derived sequences are known to

14 Evidence is rapidly mounting that transposable element (TE) expression and replication may

15 kness and monitored their effect on gene and transposable element (TE) expression with transcriptome

16 r tool with other approaches for quantifying transposable element (TE) expression, and found that Tel

17 new tool, ERVcaller, to detect and genotype transposable element (TE) insertions, including ERVs, in

18 including expansions of microsatellites and transposable element (TE) insertions.

19 mined gene expression, gene methylation, and transposable element (TE) methylation in a natural, <140

20 We found transposable element (TE) mobility in Schizosaccharomyce

21 to specifically target and cleave endogenous transposable element (TE) mRNAs produced from transcript

22 has allowed for population-level surveys of transposable element (TE) polymorphism via split alignme

23 etic silencing of a new transgene, virus, or transposable element (TE) remains enigmatic.

24 hers rely on generalized methods to quantify transposable element (TE) RNA expression, such as RT-qPC

25 r Cnr) had insertions of four related 138 bp transposable element (TE) sequences at precisely the sam

26 omplex transcriptional control mediated by a transposable element (TE) that restricts its expression

27 Loss of PAF1 suppresses endogenous transposable element (TE) transcript maturation, whereas

28 nt pollen shows a strong overaccumulation of transposable element (TE) transcripts, yet a depletion o

29 IV (Pol IV) is required for the formation of transposable element (TE)-derived small RNA transcripts.

30 predominant plasmid (pKpQIL), and a specific transposable element (Tn4401, 10 kb).

31 r levels of gene expression, higher rates of transposable element accumulation, more small interferin

32 H. bogdanii had been interrupted by a native transposable element and was surrounded by about 70 kbp

33 , revealing a differential complexity in the transposable element biology of complex systems not prev

34 d noise in terms of length, number of exons, transposable element composition, and sequence conservat

35 Here, we identify the piggyBac transposable element derived 5 (PGBD5) gene as encoding

36 We have used the newly engineered transposable element Dsg to tag a gene that gives rise t

37 re tool that provides accurate estimation of transposable element expression (retrotranscriptome) res

38 d recombination, as well as genes regulating transposable element expression.

39 The other is an LTR/Gypsy transposable element family member, which generates long

40 copy, and phenotypical characterization of a Transposable Element from Nicotiana tabacum (Tnt1) inser

41 We found a miniature inverted-repeat transposable element insertion in the promoter region of

42 ociated with this ALHS in Colias crocea to a transposable element insertion located downstream of the

43 Finally, genetic variation based on the transposable element insertion pattern was investigated

44 ed epiTEome, a program that detects both new transposable element insertion sites and their methylati

45 riation, including tandem duplications and a transposable element insertion that amplifies the expres

46 enomic organization, transcription patterns, transposable element insertions and phylogenetic analyse

47 brates solves the problem of gene-disrupting transposable element insertions by splicing them out at

48 Whereas transposable element insertions have been known to cause

49 Polymorphic transposable element insertions in promoter sequences co

50 nts lack this R domain due to insertion of a transposable element into the 3' end of ppzA We demonstr

51 rotein expression of the Gag sequence of the transposable element intracisternal A-particle.

52 The hopper hAT-family transposable element isolated from the Oriental fruit fl

53 ansposable elements, allowing us to identify transposable element lineage expansions that are unique

54 oids and quantitative imbalances in parental transposable element loads supports the genome shock hyp

55 The correlation between transposable element mobilisation in allopolyploids and

56 Transposable element mobilisation is not concomitant wit

57 ylation levels has been limited to reference transposable element positions.

58 more gene disruption, loss, conversion, and transposable element proliferation, and having reduced g

59 -associated siRNAs indicates a strengthen of transposable element repression during the allopolyploid

60 These results suggest that Xist may coopt transposable element RNA-protein interactions to repurpo

61 gnificantly hypomethylated and include fewer transposable element sequences relative to non-NAT genes

62 percent of the human genome is comprised of transposable element sequences, and the most abundant cu

63 INE-1 (long interspersed element 1, L1) is a transposable element that has extensively colonized the

64 odel whereby tethering of MIWI2 to a nascent transposable element transcript recruits repressive chro

65 onents regulate precursor mRNA splicing of P-transposable element transcripts in vivo, leading to the

66 RNAs are proposed to tether MIWI2 to nascent transposable element transcripts; however, the mechanism

67 An intronic, transposable element within SMOC2 promotes the utilizati

68 posable element (a miniature inverted repeat transposable element) insertion in the SbMATE promoter,

69 ticated loss-of-shattering allele SiLes1-TE (transposable element).

70 avirulent gene-containing SM cluster through transposable element-mediated whole-cluster duplication

71 CE1 cluster is located in a newly formed and transposable element-rich region.

72 to genomic rearrangements likely caused by a transposable element.

73 Transposable-element mRNAs are also produced, but discon

74 Miniature inverted repeat transposable elements (MITEs) are prevalent in eukaryoti

75 TIR transposons known as miniature inverted transposable elements (MITEs), and Helitrons.

76 ansposons, such as miniature inverted-repeat transposable elements (MITEs), long terminal repeat (LTR

77 Stowaway family of miniature inverted-repeat transposable elements (MITEs).

78 Mutator-like transposable elements (MULEs) are widespread across fung

79 Transposable elements (TE) comprise roughly half of the

80 tivation of a subset of evolutionarily young transposable elements (TE), including endogenous retrovi

81 By combining analysis of both genes and transposable elements (TEs) affected by CNVs, we reveale

82 ective constraint acting on lineage-specific transposable elements (TEs) and a set of 25 specific tra

83 Current assemblies traverse transposable elements (TEs) and provide an opportunity f

84 Transposable elements (TEs) and repetitive DNA make up a

85 Coevolution between transposable elements (TEs) and their hosts can be antag

86 latory variation, whereas presence of nearby transposable elements (TEs) and tissue specificity of ex

87 Transposable elements (TEs) are a prolific source of tig

88 Transposable elements (TEs) are a significant component

89 Transposable elements (TEs) are an abundant and rich gen

90 Transposable elements (TEs) are an integral part of the

91 Transposable elements (TEs) are extremely abundant in co

92 Transposable elements (TEs) are genomic parasites that a

93 Transposable elements (TEs) are interspersed repeat sequ

94 Transposable elements (TEs) are mobile DNA sequences tha

95 Transposable elements (TEs) are mobile DNA sequences tha

96 Transposable elements (TEs) are mobile genetic elements

97 Transposable elements (TEs) are mobile genetic elements,

98 Transposable elements (TEs) are mobile genetic parasites

99 Transposable elements (TEs) are mobile parasitic sequenc

100 In the plant male germline, transposable elements (TEs) are reactivated in the compa

101 Transposable elements (TEs) are selfish genetic units th

102 Transposable elements (TEs) are thought to have helped e

103 Transposable elements (TEs) are ubiquitous components of

104 Transposable elements (TEs) are ubiquitous DNA segments

105 Transposable elements (TEs) are ubiquitous genomic featu

106 Transposable elements (TEs) are uniquely equipped to dep

107 In many eukaryotic genomes, transposable elements (TEs) are widely distributed and o

108 Transposable elements (TEs) are widespread genomic paras

109 It is well documented that transposable elements (TEs) can regulate the expression

110 Transposable elements (TEs) classification is an essenti

111 Expansion of transposable elements (TEs) coincides with evolutionary

112 Transposable elements (TEs) compose nearly half of mamma

113 Transposable elements (TEs) comprise a large proportion

114 Genomic transposable elements (TEs) comprise nearly half of the

115 Transposable elements (TEs) comprise nearly half of the

116 Transposable elements (TEs) constitute a significant thr

117 Transposable elements (TEs) contribute to the large amou

118 Transposable elements (TEs) drive genome evolution and a

119 Transposable elements (TEs) have deposited functional re

120 Although transposable elements (TEs) have long been recognized to

121 ve shown that heat shock stress may activate transposable elements (TEs) in Drosophila and other orga

122 rveillance systems constrain the activity of transposable elements (TEs) in host genomes.

123 Recent research has uncovered roles for transposable elements (TEs) in multiple evolutionary pro

124 n this study, we focused on the evolution of transposable elements (TEs) in relation to the genome si

125 As) instruct DNA methylation of young active transposable elements (TEs) in the male germline.

126 Most transposable elements (TEs) in the mouse genome are heav

127 Transposable elements (TEs) influence the evolution of n

128 Variation in the presence or absence of transposable elements (TEs) is a major source of genetic

129 The silencing of repetitive transposable elements (TEs) is ensured by signal amplifi

130 Silencing of transposable elements (TEs) is established by small RNA-

131 Transposable elements (TEs) make up a large and rapidly

132 Transposable elements (TEs) make up half of mammalian ge

133 Transposable elements (TEs) regularly capture fragments

134 Transposable elements (TEs) represent the single largest

135 The excision and reintegration of transposable elements (TEs) restructure their host genom

136 Transposable elements (TEs) shape genome evolution throu

137 rt Interspersed Nuclear Elements (SINEs) are transposable elements (TEs) that amplify through a copy-

138 (piRNAs) protect the germ line by targeting transposable elements (TEs) through the base-pair comple

139 Co-option of transposable elements (TEs) to become part of existing o

140 l consequence of this is the reactivation of transposable elements (TEs) which could stimulate the im

141 ge portions of eukaryotic genomes consist of transposable elements (TEs), and the establishment of tr

142 recognition and transcriptional silencing of transposable elements (TEs), consistent with an 'arms ra

143 The majority of human KRAB-ZFPs bind transposable elements (TEs), however, since most TEs are

144 n at CHH sites is kept high, particularly at transposable elements (TEs), in the vegetative SAM relat

145 Newly evolved CREs are enriched in young transposable elements (TEs), including Long-Terminal-Rep

146 hroughout the entire seed, targets primarily transposable elements (TEs), is maintained during endore

147 hypomethylation of protein-coding genes and transposable elements (TEs), preferentially those adjace

148 Transposable elements (TEs), the movement of which can d

149 While many CTCF binding sites fall within transposable elements (TEs), their contribution to 3D ch

150 ation, little is known about their effect on transposable elements (TEs), which make up nearly half o

151 ied source of transcriptional regulators are transposable elements (TEs), whose aberrant usage could

152 lity requires control over the expression of transposable elements (TEs), whose activity can have sub

153 Half the human genome is made of transposable elements (TEs), whose ongoing activity cont

154 eliminated sequences (IESs)-many related to transposable elements (TEs)-become transcriptionally act

155 n germ cells during development de-represses transposable elements (TEs).

156 riants, many attributable to the movement of transposable elements (TEs).

157 ghlighting the diversity and distribution of transposable elements (TEs).

158 ethylation is a major silencing mechanism of transposable elements (TEs).

159 rity of HTs reported so far are transfers of transposable elements (TEs).

160 ads to risk of transcriptional activation of transposable elements (TEs).

161 elanogaster, where it acts to silence active transposable elements (TEs).

162 ised annotation of genome components such as transposable elements (TEs).

163 of this variation is due to the presence of transposable elements (TEs).

164 f MNase-sensitive regions are located within transposable elements (TEs).

165 RA5 primarily reflected the insertion of two transposable elements (TEs): the T1 DNA transposon and t

166 ymbiosis-induced genes, (4) proliferation of transposable elements and (5) divergent genetic innovati

167 ain transcriptional homeostasis by silencing transposable elements and aberrant intragenic transcript

168 lay faster evolutionary rates, lie closer to transposable elements and are less likely to be syntenic

169 mosome painting revealed the distribution of transposable elements and differentiated chromosome bloc

170 lie several aspects of gene regulation, with transposable elements and disease-associated variants en

171 and other low-complexity regions, as well as transposable elements and endogenous viruses.

172 A small number of transposable elements and genes had reduced DNA methylat

173 lay a crucial role in genome defense against transposable elements and guide Argonaute proteins to na

174 sands of circularly excised Tc1/mariner-type transposable elements and high confidence non-repetitive

175 le germline, misdirects the RNAi response to transposable elements and impairs TEI.

176 residues regulates gene expression, silences transposable elements and influences genome stability.

177 de some examples with sequence similarity to transposable elements and other sequences present in the

178 structural and functional annotations (e.g., transposable elements and repetitive sequences).

179 over long genomic distances, associated with transposable elements and subtelomeric regions, conserve

180 eading to transcriptional activation of some transposable elements and the inability to initiate tran

181 Transposable elements are abundant in the human genome,

182 , although a few upregulated transcripts and transposable elements are associated with altered small

183 ic tools and mutagenesis strategies based on transposable elements are currently under development wi

184 PIWI-interacting small RNAs (piRNAs) against transposable elements are mainly produced from the ~180-

185 Transposable elements are major evolutionary forces whic

186 Transposable elements are one of the major contributors

187 undescribed replicon genes, and to identify transposable elements as the main drivers of HGT at broa

188 Transposable elements associated with siRNA clusters had

189 The optimized insertion of transposable elements by guide RNA-assisted targeting (I

190 (RIP) mutation in Neurospora crassa degrades transposable elements by targeting repeats with C->T mut

191 Transposable elements can drive genome evolution, but th

192 of specific classes of evolutionarily young transposable elements can lead to activation of the inna

193 GRF also detects DNA or RNA transposable elements characterized by these repeats in

194 the dynamic and stage-specific regulation of transposable elements during human prospermatogonial spe

195 Three groups of Tn7-like transposable elements encode 'minimal' type I CRISPR-Cas

196 ylation analysis of non-reference and mobile transposable elements has only recently been performed,

197 Transposable elements have generated an important number

198 However, H1 loss strongly activates transposable elements hypomethylated through mutation of

199 nd H3K27me3 co-occur at multiple families of transposable elements in an Ezl1-dependent manner.

200 Bot1 (Brassica oleracea transposon 1) CACTA transposable elements in Brassica oleracea, but were los

201 Physiology or Medicine for her discovery of transposable elements in maize.

202 re the smallest but most abundant autonomous transposable elements in prokaryotic genomes, which play

203 Here, based on analysis of transposable elements in the allotetraploid goldfish gen

204 (piRNAs) act as an immune system to suppress transposable elements in the animal gonads.

205 The role of transposable elements in the expansion of nucleotide-bin

206 The piRNA pathway represses transposable elements in the gonads and thereby plays a

207 ion of alleles lacking the insertions of two transposable elements in the regulatory region of KNR6 c

208 rphism (SSAP) to compare the dynamics of six transposable elements in these allopolyploids, their dip

209 , they induce the expression of thousands of transposable elements including endogenous retroviruses

210 ich MIWI2 directs the de novo methylation of transposable elements is poorly understood, although cen

211 Transcription of transposable elements is tightly regulated to prevent ge

212 nscription of integrated DNA from viruses or transposable elements is tightly regulated to prevent pa

213 Transposable elements make up half of the mammalian geno

214 Transposable elements may also be at the origin of impor

215 ed abortion is thus unlikely to be caused by transposable elements or imprinted gene misregulation, a

216 h highly derived roles in the suppression of transposable elements or meiotic drive.

217 major influence in population genetics, and transposable elements play a key role in pan-genome evol

218 is and shows an increased genome size due to transposable elements proliferation.

219 as investigated to elucidate the features of transposable elements related to blue egg shell formatio

220 factors, including deleterious mutations or transposable elements resulting from relaxed selection,

221 y and illustrate how epigenetic silencing of transposable elements rewires host gene expression progr

222 his method to the study of the spread of the transposable elements ROO, GYPSY and DM412 on a chromoso

223 A clusters resulted in lower activity of the transposable elements through DNA methylation in the hyb

224 ulators of retrotransposition and endogenous transposable elements were dysregulated following MIA, p

225 in global transcriptional hyperactivation of transposable elements with modest effects on protein-cod

226 We also found evidence of the association of transposable elements with SLF pseudogenes.

227 that LTR/Gypsy and LTR/Copia were two major transposable elements within the intronic polyadenylatio

228 or this expansion is an arms race to silence transposable elements yet it remains poorly understood h

229 ected DNA methylation silences young, active transposable elements(2-4).

230 ng RNAs (piRNAs) instruct DNA methylation of transposable elements(3,5).

231 gration sites of retroviruses(2-6) and other transposable elements(7-9), and it has been suggested th

232 wing piRNA-directed DNA methylation of mouse transposable elements), DNMT3A/B should have been DNMT3C

233 Mutator-like transposable elements, a class of DNA transposons, exist

234 the genome revealed more than 130,000 intact transposable elements, allowing us to identify transposa

235 Transposable elements, also known as transposons, are no

236 ed high methylation levels in both genes and transposable elements, and a prevalence of methylated ov

237 are observed for complete assembly of genes, transposable elements, and highly repetitive genomic fea

238 annotated genes, novel transcribed regions, transposable elements, and microbial species.

239 histone methylation are targeted to viruses, transposable elements, and some transgenes.

240 is associated with genome changes driven by transposable elements, as a response to imbalances betwe

241 diate transcriptional silencing of genes and transposable elements, but how they interact is unclear.

242 iRNA) pathway is vital for the regulation of transposable elements, by inducing transcriptional silen

243 les with promise as aging modulators include transposable elements, circRNAs and the mitochondrial tr

244 encing embryonic, nonrenal lineage genes and transposable elements, DNMT1-mediated cytosine methylati

245 re associated with miniature inverted-repeat transposable elements, imprinted differentially methylat

246 ral loci, including protein coding genes and transposable elements, in diverse chromatin contexts.

247 Transposable elements, including endogenous retroviruses

248 fied host variants that affect expression of transposable elements, independent of their copy number,

249 RNAs) of 21-35 nucleotides in length silence transposable elements, regulate gene expression and figh

250 various levels using boolean operators (e.g. transposable elements, snakes, carotenoid content, Doebl

251 to full-length and transcriptionally active transposable elements, suggesting that these pathways ar

252 of genomic sequences, some with homology to transposable elements, that have increased in copy numbe

253 utilize small RNAs called piRNAs to silence transposable elements, thereby protecting germline integ

254 egulation of genes derived from Mutator-like transposable elements, thus contributing to the evolutio

255 It has few transposable elements, tiny intergenic regions, and is r

256 many examples, including the suppression of transposable elements, uniparental inheritance of mitoch

257 contrast to the precise circular excision of transposable elements, we report widespread heterogeneit

258 preferentially enriched on edges of silenced transposable elements, where Pol V transcribes into TEs.

259 tion levels in both protein-coding genes and transposable elements, whereas the resistant line showed

260 the accumulation of toxic transcripts of Alu transposable elements, which activate the NLRP3 inflamma

261 ith heat-induced mobilization of Tc1/mariner transposable elements, which are known to cause DSBs and

262 The cells contain tens of transposable elements, which likely cause the unpreceden

263 Decitabine globally reactivated multiple transposable elements, with activation of the dsRNA sens

264 umerous parallel mutations, many mediated by transposable elements.

265 by PHE1 have been distributed by RC/Helitron transposable elements.

266 methylation of key regulators of meiosis and transposable elements.

267 ssociated with transcriptional repression of transposable elements.

268 is indicated a marked loss of methylation of transposable elements.

269 the transcriptional regulation of genes and transposable elements.

270 ubstantial portion of sMHSs are derived from transposable elements.

271 well as a common ancestral role in silencing transposable elements.

272 nal and DNA methylation changes at genes and transposable elements.

273 ions are largely attributable to activity of transposable elements.

274 he capture and movement of gene fragments by transposable elements.

275 erspersed repeats reflecting the activity of transposable elements.

276 A large majority of new enhancers comprise transposable elements.

277 ive with 74.4% of its content in the form of transposable elements.

278 onal splicing in order to detect and silence transposable elements.

279 c changes in methylation mainly occur within transposable elements.

280 e organized into large arrays interrupted by transposable elements.

281 ells activate expression of primate-specific transposable elements.

282 ciated with the transcriptional silencing of transposable elements.

283 uarius silence overlapping sets of genes and transposable elements.

284 f bacterial communities, and contain tens of transposable elements.

285 rity of the animal germline from deleterious transposable elements.

286 lly when they involve sequences derived from transposable elements.

287 iwi ribonucleoproteins (piRNPs) that silence transposable elements.

288 motif, which is prevalent for both genes and transposable elements.

289 l for the methylation and silencing of young transposable elements.

290 (HGT) mediated by plasmids and plasmid-borne transposable elements.

291 preference for certain superfamilies of DNA transposable elements.

292 ct the transcriptional activity of genes and transposable elements.

293 annotated (773.104 Mbp), with more than 64% transposable elements.

294 H1-bound genes, but only weakly de-represses transposable elements.

295 omains yet dispensable for silencing of most transposable elements; H1 depletion affects nucleosome d

296 regions that are non-genic, pericentromeric, transposable elements; methylated; and with low recombin

297 expression and enact an adaptive response to transposable RNA elements.

298 However, it is unclear how transposable these results are for birds moving in the w

299 udy, we believe that the insights gained are transposable to other group 9 transition metals and pave

300 age small diffusible molecules, which can be transposable to other symbiotic systems.