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1 ntigs containing KPC-2 within an ISKpn6-like transposase.
2 ical and have different affinities for their transposase.
3 (tnsABCDE) including an atypical heteromeric transposase.
4 e construct flanked by binding sites for the transposase.
5 lex Virus thymidine kinase (HSV-tk) with the transposase.
6 s1 evolved from casposases, a novel class of transposases.
7 ntally distinct from other cut-and-paste DNA transposases.
8 icted proteins homologous to RCR prokaryotic transposases.
9 chanism similar to retroviral integrases and transposases.
10 representing another approach to manipulate transposases.
11 those generated by retroviral integrases and transposases.
12 ed gene loss limited to regions encoding for transposases.
13 uyveromyces lactis hobo/Activator/Tam3 (hAT) transposase 1 (Kat1), operating at the fossil imprints o
15 oprecipitation, DNase I hypersensitivity and transposase-accessibility assays combined with high-thro
18 single-cell combinatorial indexing assay for transposase accessible chromatin (sci-ATAC-seq); a softw
19 ychiatric disorders we applied the Assay for Transposase Accessible Chromatin followed by sequencing
23 DNaseI sequencing (DNase-seq) and Assay for Transposase Accessible Chromatin sequencing (ATAC-seq) p
24 itation sequencing (ChIP-seq), and assay for transposase accessible chromatin using sequencing (ATAC-
25 Recent innovations in single-cell Assay for Transposase Accessible Chromatin using sequencing (scATA
26 re, the framework for applying the Assay for Transposase Accessible Sequencing (ATAC-seq) to biobanke
32 se (MNase) digestion and ATAC-seq (assay for transposase-accessible chromatin [ATAC] using sequencing
33 bility, as determined by ATAC-seq (assay for transposase-accessible chromatin [ATAC] with high-throug
34 equencing (ChIP-seq) combined with assay for transposase-accessible chromatin coupled to high-through
36 enhancer identification, using the assay for transposase-accessible chromatin followed by sequencing
37 d despite the discovery that the Analysis of Transposase-Accessible Chromatin followed by sequencing
39 ble chromatin regions by using the Assay for Transposase-Accessible Chromatin from purified mouse car
42 ly parallel droplet-based method for mapping transposase-accessible chromatin in single cells using s
44 nd acetylated histone 3 lysine 27 as well as transposase-accessible chromatin profiling to dissect ci
46 atin accessibility profiling using assay for transposase-accessible chromatin sequencing (ATAC-seq) i
47 H) and T(FR) cells was assessed by assay for transposase-accessible chromatin sequencing (ATAC-seq) t
50 encing (scRNA-seq) and single-cell assay for transposase-accessible chromatin sequencing (scATAC-seq)
52 knockdown approaches, CRISPR-Cas9, assay for transposase-accessible chromatin sequencing, and chromat
53 ngle-cell and bulk RNA sequencing, assay for transposase-accessible chromatin sequencing, and functio
56 lowed by sequencing (ChIP-seq) and assay for transposase-accessible chromatin using sequencing (ATAC-
58 onous neuronal activation using an assay for transposase-accessible chromatin using sequencing (ATAC-
59 n of the chromatin landscape (as assessed by transposase-accessible chromatin using sequencing (ATAC-
61 ible genome of individual cells by assay for transposase-accessible chromatin using sequencing (ATAC-
62 (CNV), whole-exome sequencing, and Assay for Transposase-Accessible Chromatin using sequencing (ATAC-
63 Here we performed RNA sequencing, assay for transposase-accessible chromatin using sequencing (ATAC-
65 for histone modifications and 132 assay for transposase-accessible chromatin using sequencing (ATAC-
67 g was accomplished by employing an Assay for Transposase-Accessible Chromatin using Sequencing (ATAC-
68 eq), RNA sequencing (RNA-seq), and assay for transposase-accessible chromatin using sequencing (ATAC-
70 ous CD4+ T cells were analyzed by assays for transposase-accessible chromatin using sequencing (ATAC-
71 munoprecipitation with sequencing, assay for transposase-accessible chromatin using sequencing and Hi
75 proach, named 'droplet single-cell assay for transposase-accessible chromatin using sequencing' (dscA
76 res and applied it to an ATAC-seq (assay for transposase-accessible chromatin using sequencing) data
77 -cell RNA sequencing and ATAC-seq (assay for transposase-accessible chromatin using sequencing) exper
78 seq]) and chromatin accessibility (assay for transposase-accessible chromatin using sequencing) induc
79 cipitation followed by sequencing, assay for transposase-accessible chromatin using sequencing, and i
81 -seq) profiling combined with bulk assay for transposase-accessible chromatin with high-throughput se
82 ibitory cortical neurons using the Assay for Transposase-Accessible Chromatin with high-throughput se
84 We developed an allele-specific assay for transposase-accessible chromatin with high-throughput se
88 tomes using promoter capture Hi-C, assay for transposase-accessible chromatin with high-throughput se
89 Super-resolution imaging using assay for transposase-accessible chromatin with photoactivated loc
90 ll-specific Ribotag RNA profiling, assay for transposase-accessible chromatin with sequencing (ATAC-s
92 de RNAs and open chromatin sites by assay of transposase-accessible chromatin with sequencing (ATAC-s
93 et-based mitochondrial single-cell assay for transposase-accessible chromatin with sequencing (scATAC
96 (3D ATAC-PALM) that integrates an assay for transposase-accessible chromatin with visualization, PAL
97 tu, we developed three-dimensional assay for transposase-accessible chromatin-photoactivated localiza
98 s H3K9ac, H3K27ac and H3K27me3; an assay for transposase-accessible chromatin; and RNA sequencing wer
99 he route of an intact DNA strand through the transposase active site before second strand cleavage.
103 roscopy structures of the amphioxus ProtoRAG transposase (an evolutionary relative of RAG), we identi
104 ted early during the interaction between the transposase and a potential target site, which may be ho
105 oprotein intermediates demonstrated that the transposase and Cas9 moieties can bind their respective
107 irst structural study of a copy-out/paste-in transposase and demonstrate its ability to catalyze all
109 action pathway of a eukaryotic cut-and-paste transposase and illuminate some of the earliest steps in
110 t in incomplete prophages, while tail fiber, transposase and integrase genes are significantly enrich
111 study, we present a method that combines Tn5 transposase and molecular identifiers for the highly acc
112 ow that two ancestral RAG1 proteins, Transib transposase and purple sea urchin RAG1-like, have a late
113 ly degenerate and appeared to have a mutated transposase and terminal sequences, while a second 3131
114 a single plasmid construct that combines the transposase and the transpositioning transgene element t
116 to decrease post-transposition expression of transposase and to eliminate the cells that have residua
117 The use of PB in a plasmid containing both transposase and transposon greatly increased the probabi
118 ontal gene transfer between bacteria such as transposases and integrases) syntenic with ARGs were rar
120 CRISPR system, Eukaryotic-like proteins, and transposases), and in functions important for nutrient c
121 A and TnsB together form the heteromeric Tn7 transposase, and TnsD is a target-selecting protein that
122 e mobile DNAs, imprecision of integrases and transposases, and differential activity among identical
123 were capable of detecting 82% of the ISs and transposases annotated in GenBank with 80% sequence iden
124 stems, no helper plasmids are required since transposases are not expressed inside the host cells, th
127 through human CD46, a relatively safe SB100X transposase-based integration machinery, a micro-LCR-dri
129 s ordered assembly process shepherds primary transposase binding to the inner 12DRs (where cleavage d
131 h P-elements, HISR-N lines lost functional P-transposase but retained Har-P's that when crossed back
134 targeting, such as those catalyzed by active transposases, can generate DNA fragments that are used b
135 the in vitro activities of the putative Cas1 transposase ('casposase') from Aciduliprofundum boonei.
136 n-based systems that integrate transgenes by transposase-catalyzed "cut-and-paste" mechanism have eme
138 peats (TIRs) contain sequences essential for transposase cleavage and have been implicated in DNA rep
141 Intrabiliary instillation of the transposon-transposase complex was coupled with lobar bile duct lig
142 deciphered several inverted terminal repeat-transposase complexes that are intermediates during tran
143 we varied nuclear preparation conditions and transposase concentrations and applied rigorous quality
144 and found that transposition declined after transposase concentrations became high enough for visibl
145 s (Fic; D-alanyl-D-alanine-carboxypeptidase; transposase) dated the divergence event at 300 million y
147 We conclude that Kat1 is a highly regulated transposase-derived endonuclease vital for sexual differ
148 IP-seq or DNase-seq, without considering the transposase digested DNA fragments that contain addition
150 rucially, we find that each active site of a transposase dimer is responsible for two hydrolysis and
151 r basis for the reduced affinity of the Mos1 transposase DNA-binding domain for the left IR as compar
153 chemical transfection or Lipofection of the transposase:DNA mixture, in contrast to other published
155 red specific catalytic residues in the PGBD5 transposase domain as well as end-joining DNA repair and
157 of Asn-610 with either Asp or Glu within the transposase domain significantly reduces ssDNA binding a
158 uires distinct aspartic acid residues in its transposase domain, and specific DNA sequences containin
159 ) arose from a chimeric fusion of the Hsmar1 transposase downstream of a protein methylase in anthrop
160 agenic T2Onc2 transposon via expression of a transposase driven by the keratin K5 promoter in a p53(+
161 s appear to have originated from prokaryotic transposases (e.g. TN7 and Mu) and combine a CDC6/ORC1-S
166 n vivo, leading to the production of the non-transposase-encoding mature mRNA isoform in Drosophila g
167 anied by alteration of their function from a transposase/endonuclease to a heterochromatin protein, d
168 arly, fusion of a fluorescent protein to the transposase enhanced the transposition activity, represe
169 9 protein fused to the amino-terminus of the transposase enzyme designed to target the hypoxanthine p
173 distantly related elements with heteromeric transposases exist with alternate targeting pathways tha
174 ved 5 (PGBD5) gene as encoding an active DNA transposase expressed in the majority of childhood solid
176 alternative strategies to achieve transient transposase expression, and engineered refinements in th
179 RAG1/RAG2 (RAG) recombinase, a domesticated transposase, for assembly of antigen receptor genes.
181 Here we characterize a CRISPR-associated transposase from cyanobacteria Scytonema hofmanni (ShCAS
182 copy structures of Transib(4,5), a RAG1-like transposase from Helicoverpa zea, that capture the entir
183 e integration; however, using transposon and transposase from separate vectors circumvented this.
184 cies, as well as in humans, but with loss of transposase function (except Schizosaccharomyces japonic
187 s1/2 (Rag1/2) recombinase has evolved from a transposase gene, demonstrating that TEs can be domestic
190 ely related to the activity of the TNP2-like transposase genes as the expression values of the transp
191 bovine isolates contained significantly more transposase genes but fewer transposase pseudogenes than
193 that the different activity of the TNP2-like transposase genes is likely associated with the three in
194 -rich introns were retained in the TNP2-like transposase genes of the Bot1 (Brassica oleracea transpo
195 posase genes as the expression values of the transposase genes were higher in B. oleracea than in B.
197 nogaster hsp70 promoter for a heat-inducible transposase helper plasmid, and creating vectors marked
198 ilarity between RAG1 and the hairpin-forming transposases Hermes and Tn5 suggests the evolutionary co
200 ically, accessible sites are captured by Tn5 transposase in permeabilized nuclei to permit, within ma
202 here the induction of expression of multiple transposases in a Streptococcus mitis biofilm when the p
203 eaction and the mechanism of hAT and Transib transposases including the importance of the conserved W
204 that several point mutations in the mariner transposase increase their activities by disrupting the
205 A popular example is ATAC-seq, whereby Tn5 transposase inserts sequencing adapters into accessible
206 nsposon greatly increased the probability of transposase integration; however, using transposon and t
207 aptations that transformed the ancestral RAG transposase into a RAG recombinase with appropriately re
208 a transgene flanked by binding sites for the transposase, into the cytoplasm of porcine zygotes.
209 e construct flanked by binding sites for the transposase, into the pronuclei of fertilized oocytes.
210 When purified recombinant Mos1 or Mboumar-9 transposase is co-transfected with transposon-containing
211 nsposition activity induced by the wild-type transposase is low but can be altered by modification of
214 ng the largest and most common among all DNA transposases, is the one whose members have been used fo
215 the structure and further show that the IS21 transposase, IstA, recognizes the IstB*DNA complex and p
216 In this study, we uncovered a domesticated transposase, Kluyveromyces lactis hobo/Activator/Tam3 (h
217 eta-catenin using sleeping beauty transposon/transposase leads to hepatocellular carcinoma (HCC) in m
218 rate that CRISPR/Cas9 combined with piggyBac transposase lineage labeling can produce unique models o
219 ore tested it in combination with a piggyBac transposase lineage labeling system to track the develop
220 e chromatin with visualization (ATAC-see), a transposase-mediated imaging technology that employs dir
222 ransduction efficiency of rAAV with piggyBac transposase-mediated somatic integration, was developed
227 mpared the preferences of two active mariner transposases, Mos1 and Mboumar-9, for their imperfect tr
229 e enhancer DNA segment is the site where the transposase MuA binds and makes bridging interactions wi
232 ee-dimensional structures of transpososomes (transposase-nucleic acid complexes) are available, and w
234 ed sensitive biochemical assays for the TnpA transposase of the Tn3-family transposon Tn4430 and used
236 Ac elements, these results give insight into transposase overproduction inhibition by demonstrating t
237 results were obtained with the domesticated transposase PogZ, another cellular interaction partner o
238 LPs) as carriers of the hyperactive piggyBac transposase protein (hyPBase), we demonstrate rates of D
239 We demonstrate lentiviral co-delivery of the transposase protein and vector RNA carrying the transpos
241 tion by demonstrating that the appearance of transposase protein structures and the end of active tra
242 genetic material encoding the gene-inserting transposase protein, raising concerns related to persist
245 eads to downstream recruitment of additional transposase proteins, and will guide protein engineering
246 gnificantly more transposase genes but fewer transposase pseudogenes than human isolates, suggesting
247 from a white eye mutant strain had an intact transposase reading frame and terminal sequences consist
248 ormation system by linking the hopper(Bd-we) transposase reading frame to a D. melanogaster hsp70 pro
250 in a lentivirus backbone containing PiggyBac transposase recognition elements together with fluoresce
252 nome editing agents-nucleases, base editors, transposases/recombinases and prime editors-are currentl
255 ith guide RNA (gRNA), donor DNA and piggyBac transposase resulted in efficient, targeted genome editi
256 However, the 3'-end can be bypassed by the transposase, resulting in transduction of flanking seque
258 ow but can be altered by modification of the transposase sequence, including deletion, fusion, and su
259 a method that exploits contiguity preserving transposase sequencing (CPT-seq) to facilitate the scaff
260 ice et al suggest that the CRISPR-associated transposase ShCAST system could lead to additional inser
266 hofmanni (ShCAST) that consists of Tn7-like transposase subunits and the type V-K CRISPR effector (C
267 ure provides the first view of the P element transposase superfamily, offers new insights into P elem
270 We used the Sleeping Beauty (SB) transposon/transposase system to identify activated oncogenes in he
272 e we show that the DNA-binding domain of the transposase targets the enzyme to transposon-end remnant
274 TnsB, is from the large family of bacterial transposases, the second, TnsA, is related to endonuclea
275 ase DNase I, and ATAC-seq, which is based on transposase Tn5, have been widely used to identify genom
277 w DNA binding is modulated by the asymmetric transposase to allow the capture of a second transposon
278 multiple sites of interaction could allow a transposase to locate its transposon ends amidst a sea o
281 ubstrate pair, Escherichia coli ClpX and MuA transposase, to address how these powerful enzymes recog
282 nthetic mRNA encoding the SB100X hyperactive transposase together with plasmid DNA carrying a transge
283 of a plasmid encoding the SB100X hyperactive transposase, together with a second plasmid carrying a t
284 nthetic mRNA encoding the SB100X hyperactive transposase, together with circular plasmid DNA carrying
285 such gene encodes the domesticated piggyBac transposase TPB6, required for heterochromatin-dependent
286 ilitated by one or more proteins, called the transposase, typically encoded by the mobile element its
287 mational changes in which the 'wings' of the transposase unfurl to bind substrate DNA, close to execu
288 xcised by a K248A excision(+)/integration(-) transposase variant are processed by hairpin resolution,
289 ers, fluorescent protein genes, and piggyBac transposase vectors to demonstrate that this can be a re
291 ures of wild-type and catalytically inactive transposases, we show that all the catalytic steps of tr
293 over, we identified a critical region in the transposase where the net charge of the amino acids seem
294 rast to strand transfer complexes of genuine transposases, where severe kinks occur at the integratio
295 (DDN) differs from the DDD motif of related transposases, which may be important for its role as a D
296 cular group of DNA transposons that encode a transposase with a DD(E/D) catalytic domain that is topo
297 We found that the FKBP-DD confers the PB transposase with a higher transposition activity and bet