ライフサイエンスコーパス: typing

1 molecular characterisation, including strain typing.

2 s over the traditional method of serological typing.

3 sistance and virulence genes, SCCmec and spa typing.

4 d need to perform culture isolation prior to typing.

5 statistically similar results for S. aureus typing.

6 them were individually validated through SNP typing.

7 tive units-variable number of tandem repeats typing.

8 e set of markers for genetic Vel blood group typing.

9 , available at referral centers, for amyloid typing.

10 e and virulence profiling, including capsule typing.

11 s, alongside genomic human leukocyte antigen typing.

12 susceptibility testing, and epidemiological typing.

13 nst adalimumab (AAA) levels and class II HLA typing.

14 , and isolates underwent multilocus sequence typing.

15 od cells from dimethyl sulfoxide for antigen typing.

16 erived from pulsed-field gel electrophoresis typing.

17 transplantation requires high-resolution HLA typing.

18 PC-KP isolates underwent multilocus sequence typing.

19 validated by comparison with antibody-based typing.

20 omosome mec, and Panton-Valentine leukocidin typing.

21 and were examined using multilocus sequence typing.

22 r association with genetic susceptibility by typing 112 single-nucleotide polymorphisms (SNPs) associ

23 quencing and core genome multilocus sequence typing (1546 loci) on serogroup W disease isolates from

24 By typing a disease term of interest, the user can identify

25 ino acid level to achieve 99-100% four-digit typing accuracy for both class I and II HLA genes, takin

26 udy aimed to evaluate the semiautomated RFLP typing against the standard manual method.

27 tify a new reference scheme capable of fully typing all isolates.

28 rB allele 87, two of the multilocus sequence typing alleles that define ST648; and (ii) the typical a

29 However, microbial strain typing allows zoonotic pathogens to be categorised, and

30 Microbiome community typing analyses have recently identified the Bacteroides

31 HLA-Upgrade' tool infers high-resolution HLA typing and 'HLA-2-Haplo' imputes haplotype pairs and pro

32 84.4% (411/487) concordance with traditional typing and 100% (487/487) accuracy when confirmed by DNA

33 High-resolution MHC class II typing and a T-cell proliferation assay using preselecte

34 ic (gene comparisons and multilocus sequence typing and analysis), genomic (dDDH, ANI, and AAI) and p

35 genome-wide microarray, HLA high-resolution typing and AQP4 gene sequencing data to analyze genetic

36 Both short-read RNA-seq-based HLA typing and BCR/TCR repertoire sequencing (AIRR-seq) curr

37 provide an improved capability for molecular typing and clinical diagnostics, as well as facilitate t

38 ely used programs for genome-based molecular typing and demonstrate its ease of use, accuracy, speed

39 ific single-shot robust assay for flavivirus typing and diagnosis using targeted mass spectrometry te

40 We apply HISAT2 for HLA typing and DNA fingerprinting; both applications form pa

41 cing is becoming a leading technology in the typing and epidemiology of microbial pathogens, but the

42 Current techniques for Gram-typing and for diagnosing a pathogen at the early infect

43 tinguish isolation sources was tested by SNP typing and GC assignment of 154 isolates from hospital p

44 to provide turn-key solutions for molecular typing and gene detection directly from next generation

45 tors (ABX-GMFETs) to facilitate on-site Gram-typing and help in the detection of the presence or abse

46 Direct typing and imputation was used to fine-map the human leu

47 ventional techniques for A. baumannii strain typing and outbreak analysis.

48 ng (WGS) is a promising technique for strain typing and outbreak investigations.

49 for global harmonization of Lm genome-based typing and population biology.

50 nsors targeting loci associated with species typing and resistance to rifampin, isoniazid and fluoroq

51 Whole-genome multilocus sequence typing and single nucleotide polymorphism analyses provi

52 signatures, metagenomic multilocus sequence typing and strain-specific marker genes.

53 tion helps avoid costs for wet lab-based HLA typing and thus renders association analyses of the HLA

54 Families agreed to HLA antigen typing and transplantation if a matched sibling donor wa

55 lymerase chain reaction (PCR) for phylogroup typing and using PCR with primers for O25b rfb and allel

56 fully assembled to obtain the full molecular typing and vaccine antigen profile of the N. meningitidi

57 Molecular typing and virulence analysis are powerful tools that ca

58 1178 case-patients, 1082 (92%) with G and P typing, and 4927 controls.

59 acterised by serotyping, multilocus sequence typing, and antimicrobial susceptibility testing.

60 ryngeal samples for viral load quantitation, typing, and genotyping, and blood samples for transcript

61 perform multilocus sequence typing, capsular typing, and identification of virulence and antimicrobia

62 taphylococcal protein A (spa) typing, SCCmec typing, and PCR-based assays were used to detect mecA, m

63 ssment of antiviral resistance, strain-level typing, and phylogenetic relatedness.

64 ovel functional granularity to neuronal cell-typing, and provided insights critical to simplifying/un

65 analysed for antibiotic resistance, plasmid typing, and transfer analysis, and strain relatedness.

66 chemical staining for p16INK4a and Ki67, HPV-typing, and viral load determination in AGWs of HIV+ com

67 eld gel electrophoresis, multilocus sequence typing, and WGS.

68 Using serotyping, multilocus sequence typing, and whole-genome sequencing (WGS) of selected st

69 the 2-position and subsequent reaction with typing antiserum 35a.

70 Using a classical strain typing approach involving transmission and adaptation to

71 rrent whole-genome clustering and multilocus typing approaches do not fully exploit core and accessor

72 network compared to current molecular strain typing approaches, including analysis of intra-host dive

73 ata enable the improvement of sequence-based typing approaches, such as multilocus sequence typing (M

74 val probabilities conditional on refined HLA typing are achievable by combining SRTR and HaploStats d

75 gency situations where time or resources for typing are limited, so it is often in short supply.

76 Using ABO blood typing as a proof-of-concept, we developed i) an integra

77 ning the allelic state of the HLA genes (HLA typing) as a by-product of standard whole-genome sequenc

78 igned a universal human papillomavirus (HPV) typing assay based on target enrichment and whole-genome

79 lly available HAdV PCR assay and a molecular typing assay for species identification.

80 Blood typing assay is a critical test to ensure the serologica

81 and a recently developed multilocus sequence typing assay showed congruent typing results.

82 In conclusion, either FluA virus typing assay would be a valuable complement to the Panth

83 l donor-recipient pairs had allele-level HLA typing at HLA-A, -B, -C, and -DRB1, which is the current

84 ommunity, and more robust and discriminatory typing at the single-nucleotide-polymorphism level.

85 tform-independent program capable of rapidly typing bacterial isolates directly from raw sequence rea

86 ifferent bacterial strains, as achieved with typing based on genetic markers.

87 Here we introduce probabilistic cell typing by in situ sequencing (pciSeq), an approach that

88 and provided oral-rinse samples for HPV DNA typing by polymerase chain reaction.

89 2006-2007 at 6 Canadian hospitals underwent typing by pulsed-field gel electrophoresis, multilocus s

90 period, with molecular screening for HRV and typing by sequencing VP4/VP2 junction.

91 HLA typing can be fast and inexpensive.

92 cing was used to perform multilocus sequence typing, capsular typing, and identification of virulence

93 ncing with core genome multilocus sequencing typing (cgMLST) analysis for real-time surveillance and

94 software for core genome multilocus sequence typing (cgMLST) analysis of whole-genome sequencing data

95 Core genome multilocus sequence typing (cgMLST) and high-quality single nucleotide polym

96 to generate core genome multilocus sequence typing (cgMLST) data.

97 efinement to core genome multilocus sequence typing (cgMLST) in which alleles at each gene are reprod

98 lopment of a core genome multilocus sequence typing (cgMLST) scheme for M. gallisepticum strains and

99 reation of a core genome multilocus sequence typing (cgMLST) scheme to provide a stable platform for

100 Based on core genome multilocus sequence typing (cgMLST), isolates from lineages I (n = 22; 63%)

101 om Kenya by core genome multi-locus sequence typing (cgMLST).

102 of conventional methods with WGS for strain typing clinical Acinetobacter isolates and analyzing a c

103 to the same core-genome multilocus sequence typing cluster with no more than 4 allelic differences;

104 Sequence typing clusters the Rickettsia within the Torix group of

105 first application of eWGS for universal HPV typing could be a useful method to elucidate HPV epidemi

106 ng 252.000 typing sessions via a touchscreen typing data acquisition mobile app (iPrognosis), the pro

107 We used imputed SNP to HLA typing data from these cohorts to further fine map the h

108 combination of accelerometer and touchscreen typing data that are passively captured during natural u

109 grants included in a secondary analysis with typing data were assumed index cases.

110 Ward movement and typing data were combined to identify plausible donors f

111 Typing demonstrated a high correlation between MRSA on p

112 se, rendering its diagnosis and histological typing difficult and leading to suboptimal patient care

113 en expression, creating a risk for Vel blood typing errors and transfusion reactions.

114 stimate" high-resolution from low-resolution typing exist, but their accuracy remains unknown.

115 to supplement consultation with local tissue typing experts.

116 Typing for 11 559 (67%) of 17 136 specimens revealed 66

117 The N. gonorrhoeae Sequence Typing for Antimicrobial Resistance (NG-STAR) molecular

118 lies on antigen-level (lower resolution) HLA typing for HLA-A and HLA-B, and allele-level for HLA-DRB

119 pert C. difficile/Epi to multilocus sequence typing for identification of C. difficile NAP1 and found

120 kidney donors; hematology for comprehensive typing for patients with anemia requiring chronic transf

121 e present a method called 'genomic neighbour typing' for inferring the phenotype of a bacterial sampl

122 HLA typing from RNA sequencing is further complicated by pos

123 of next-generation sequencing have made HLA typing from standard short-read data practical.

124 ibutions derived from 6.59-million-donor HLA typings from the National Marrow Donor Program registry.

125 y, phylogenetics, and multi-locus sequencing typing, have not been quantified.

126 Typing HLA genes in patient and donor is indeed required

127 oning regimen, and with available allele HLA typing (HLA-A, -B, -C, and -DRB1).

128 Strain typing identified 23 different strains.

129 re highly prevalent, followed by manual RFLP typing if resolution is not achieved, thereby saving tim

130 ing applications, including bacterial strain typing, immunization of cultures, autoimmunity or self-t

131 the gold-standard benchmark dataset for HLA typing in terms of both accuracy and speed, with an accu

132 Genome-wide single nucleotide polymorphism typing in two siblings with neonatal diabetes from a con

133 ysiological recordings, and neurotransmitter typing in two transgenic lines, the widely used Gal4s115

134 ished mapping approach to leverage dense SNP typing information and for the first time assemble the a

135 the epidemiology of these infections, strain typing is required.

136 esses for each HLA gene (high-resolution HLA typing) is essential to establish donor-recipient compat

137 ent discovery of isolates missing one of the typing loci, adh-1, raises concern about its suitability

138 onclusion, clusters (as defined by MIRU-VNTR typing) may be circulating for decades in a high-burden

139 yping (MLST), is the current "gold standard" typing method for investigation of legionellosis outbrea

140 he potential to become the new gold standard typing method for L. pneumophila.

141 is study, we developed a new high-resolution typing method for pig SLA-1 and successfully typed 307 i

142 triction fragment length polymorphism (RFLP) typing method is highly discriminatory; however, it is l

143 sified E. coli into four types using a novel typing method to monitor fimH mutation patterns of fecal

144 rugs will greatly benefit from this unbiased typing method.

145 om HLA typing, regardless of nomenclature or typing method.

146 Combining molecular typing methods and geographical information system (GIS)

147 Molecular typing methods combined with spatial analysis suggest po

148 LA antigens, the HLA system nomenclature and typing methods have constantly evolved, which leads to d

149 Conventional bacterial typing methods lack the discriminatory power to confiden

150 Because current typing methods often fail to resolve the infection sourc

151 olates were highly concordant with the other typing methods performed.

152 y analyses and is more accurate than current typing methods used during outbreak investigations.

153 Genomic typing methods were compared to conventional phenotypic

154 ype B and that the results of the two strain-typing methods would be comparable.

155 h currently used whole-genome clustering and typing methods, and has potential uses across bacterial

156 distinguishable in coinfections with current typing methods.

157 ariable number tandem repeat assay and other typing methods.

158 enotyped using manual and semiautomated RFLP typing methods.

159 efined due to a lack of resolution in strain typing methods.

160 pean countries presented multilocus sequence typing (MLST) alleles, sequence types and emm types (onl

161 Multi locus sequencing typing (MLST) analysis identified two strains of tsetse-

162 ensitivity inferred from multilocus sequence typing (MLST) and genome-wide SNP-based phylogenetic ass

163 of CR-KP infections with Multilocus sequence typing (MLST) and Matrix-assisted laser desorption ioniz

164 d genes were analyzed by multilocus sequence typing (MLST) and sequence analysis of virulence-associa

165 icrobial susceptibility, Multilocus Sequence Typing (MLST) and Whole Genome Sequencing (WGS) analysis

166 C, and rpoB), applying a multilocus sequence typing (MLST) approach.

167 Serotyping and multilocus sequence typing (MLST) are primary methods to differentiate strai

168 redominantly belonged to multilocus sequence typing (MLST) clonal complex (CC)-21.

169 Multilocus sequence typing (MLST) confirmed the strains belong to ST59, ST13

170 ation structure based on multilocus sequence typing (MLST) data derived from the WGS data showed that

171 A multilocus sequence typing (MLST) database for V. parahaemolyticus was creat

172 mparison between WGS and multilocus sequence typing (MLST) identified major discrepancies for 17% of

173 Two multilocus sequence typing (MLST) schemes have been developed for M. bovis,

174 Multi locus sequence typing (MLST) suggests presence of genetic homogeneity a

175 Nested multilocus sequence typing (MLST) was employed for case specimen extracts.

176 ctrophoresis (PFGE) and multi-locus sequence typing (MLST) were performed to assess clonality.

177 ping approaches, such as multilocus sequence typing (MLST), by substantially increasing the number of

178 ping (SBT), analogous to multilocus sequence typing (MLST), is the current "gold standard" typing met

179 oresis (PFGE) and 7-gene multilocus sequence typing (MLST), provided limited resolution to adequately

180 es confirmed as ST398 by multilocus sequence typing (MLST), which prompted retrospective analysis of

181 ble candidate genes for multi-locus sequence typing (MLST).

182 amplicon sequencing for multilocus sequence typing (MLST).

183 oups defined by standard multilocus sequence typing (MLST).

184 014 was characterized by multilocus sequence typing (MLST).

185 nverted high-resolution, sequence-based, HLA typing of 310 subjects from an ethnically heterogeneous

186 We demonstrate the simple, multiplexed typing of a variety of epigenetic cancer biomarker 5mC w

187 Typing of amyloid fibrils, a critical determinant of the

188 cular surveillance of noroviruses, including typing of both polymerase and capsid genes, is important

189 and, where available, genetic and antigenic typing of case isolates.

190 universally recognized, further careful sub-typing of cases may provide more precise genomic signals

191 ypically characterized, including multilocus typing of five genes and whole-genome sequencing.

192 have not been exploited in the diagnosis and typing of flaviviruses.

193 Furthermore, this method is useful for rapid typing of GAS isolates and culture-negative specimens du

194 a where improvements are necessary is in the typing of highly similar samples, such as those samples

195 Accurate typing of HLA genes with short-read sequencing data has

196 tion of this technology to the detection and typing of influenza and other viruses.

197 Typing of influenza virus strains is an important aspect

198 eful tool as a first-line method for routine typing of M. tuberculosis isolates, especially where Bei

199 Multilocus sequence typing of multiple isolates from the same procedure reve

200 oratory equipment for the large-scale global typing of Mycobacterium avium subspecies paratuberculosi

201 Typing of Mycobacterium avium subspecies paratuberculosi

202 duced the IS6110-PvuII kit for semiautomated typing of Mycobacterium tuberculosis using the RiboPrint

203 cal microbiology, and it can be utilized for typing of other pathogenic bacteria species.

204 Prospective typing of patients and donors in unrelated donor search

205 ed with conventional gel electrophoresis for typing of S. aureus isolates of bovine origin.

206 S-PCR) and virulence gene identification for typing of S. aureus strains.

207 ion for multi-omics lineage mapping and cell typing of single cells.

208 n addition, the molecular identification and typing of strains were also carried out.

209 HLA-C typing of target cells showed that KIR2DS2 recognition w

210 ucted next-generation sequencing (NGS)-based typing of the 33 human leukocyte antigen (HLA) genes in

211 Typing of the isolates (n = 172) identified all 10 GBS s

212 nes from the microcosms as well phylogenetic typing of the isolates showed that ethenotrophs in the s

213 The HLA typing of the patient showed HLA-DQ8, which was previous

214 ologic examination is essential for accurate typing of the polyps to predict malignant potential and

215 Typing of these agents may complement disease assessment

216 We developed two LDTs for FluA virus strain typing on the Panther Fusion instrument, enabling side-b

217 eeded to confirm the association between HLA typing or rs2856830 genotyping and survival, and to dete

218 g and survival, and to determine whether HLA typing or rs2856830 genotyping improves risk stratificat

219 roup 1 isolates (n = 106) from the standard "typing panel," previously used by the European Society f

220 By 24 MIRU-VNTR typing, persons in clustered groups were 1.96 times more

221 bioinformatics whole-genome sequencing (WGS) typing pipelines at Public Health England are dependent

222 shed G. vaginalis species-specific and clade-typing polymerase chain reaction assays.

223 Urethral Nm isolates were similar by fine typing (PorA P1.5-1,10-8, PorB 2-2, FetA F3-6), except 2

224 igh cost, and limited availability of strain typing preclude their routine use.

225 The EQA participation helps to keep the typing procedures at a high standard and provides data f

226 Standard typing procedures use serological or amplification-based

227 tely and independently controlled a computer typing program 28 weeks after electrode placement, at th

228 of distinct tumor gland "units." Tumor gland typing provided an additional layer of intratumoral hete

229 Sequence-based typing provides multiple advantages over length-based me

230 mance exceeded previous iBCIs as measured by typing rate (by a factor of 1.4-4.2) and information thr

231 Anti-A or anti-B typing reagents were dried inside the microchannel of a

232 ilitate analysis and gain knowledge from HLA typing, regardless of nomenclature or typing method.

233 ture, allowing for comparison and sharing of typing results among laboratories worldwide.

234 ypic DST, Sanger sequencing, and traditional typing results for a collection of 91 strains.

235 Among 3,300 women with CIN2+, typing results, and vaccine history available, 1,561 (47

236 ng 3,300 women with available data on CIN2+, typing results, and vaccine history, 1,561 (47%) were HP

237 dimensionality and achieve informative cell typing results.

238 locus sequence typing assay showed congruent typing results.

239 HLA typing revealed that 155 relatives carried this protecti

240 Molecular typing revealed the genotype of these strains to be E:P1

241 pulsed-field gel electrophoresis (PFGE) for typing S. aureus Forty-two S. aureus isolates from three

242 Sequence-based typing (SBT), analogous to multilocus sequence typing (M

243 lm formation, Staphylococcal protein A (spa) typing, SCCmec typing, and PCR-based assays were used to

244 e have created the first multilocus sequence typing scheme (MLST) for P. larvae, which largely confir

245 nized into a core genome multilocus sequence typing scheme (N gonorrhoeae cgMLST v1.0).

246 BT and can be used as part of a hierarchical typing scheme that should maintain backwards compatibili

247 Antimicrobial Resistance (NG-STAR) molecular typing scheme uses the DNA sequences of 7 genes (penA, m

248 (ERIC)-polymerase chain reaction (PCR)-based typing scheme's divisions while providing added resoluti

249 e genome sequence (WGS) data into a sequence typing scheme, while avoiding the caveat of using an arb

250 performance for standard multilocus sequence typing schemes, along with larger genome-scale typing sc

251 ping schemes, along with larger genome-scale typing schemes, and it enables rapid automated detection

252 l population structure compared with current typing schemes.

253 terns and the same MLST (multilocus sequence typing) sequence type (ST-1068) regardless of their geog

254 A commercial sequence-based typing service for C. glabratathat targets polymorphic t

255 In a validation dataset of 36,000 typing sessions from 39 subjects (17 healthy/22 PD patie

256 elf-reported health status providing 252.000 typing sessions via a touchscreen typing data acquisitio

257 tribution of 76.528 accelerometer and 18.069 typing sessions) with self-reported health status (HC or

258 ntribution of 18.305 accelerometer and 2.922 typing sessions), the proposed approach achieved 0.86/0.

259 Multilocus sequence typing showed various clades, with marginal overlap betw

260 The S-segment, used for typing, showed 41% amino acid diversity to its closest r

261 Typing studies suggest that most cases of hospital-onset

262 The Meningococcal Antigen Typing System (MATS) was used to estimate coverage by 4C

263 The widespread use of this typing system has resulted in several problems, includin

264 This paper presents a microfluidic blood typing system using a small quantity of blood sample to

265 ntages over traditional ITS1- and ITS2-based typing systems, including a simpler analysis and interpr

266 ); however, conventional multilocus sequence typing (targeting 6 conserved loci) and whole-genome seq

267 We performed two band-based typing techniques (pulsed-field gel electrophoresis and

268 g putative livestock-human transmission used typing techniques with limited resolution.

269 HLA typing technologies provide ambiguous results in that th

270 c - for Wolbachia, using multilocus sequence typing to characterize bacterial strains.

271 We undertook tumor typing to classify MMR defects to determine if MMR statu

272 Genetic typing, to establish whether trends of antimicrobial res

273 A curated Web-based user-friendly sequence typing tool based on antimicrobial resistance determinan

274 we present the Genome Detective Coronavirus Typing Tool that can accurately identify the novel sever

275 To assist in viral discovery, PaVE offers a typing tool; a simplified algorithm to determine whether

276 elease in 2019, we have produced a number of typing tools for emergent viruses that have caused large

277 uzi species is categorized into six discrete typing units (TcI to TcVI) of which TcI is most abundant

278 s covering TcI, TcII, TcV, and TcVI discrete typing units, with a mean (+/-SEM) of 3.9 +/- 0.7 haplot

279 % harbored infections with multiple discrete typing units.

280 lementation of human leukocyte antigen (HLA) typing using Polysolver or HLAminer combined with custom

281 We used multilocus sequence typing utilizing eight chromosomally located housekeepin

282 e analysis of natural smartphone touchscreen typing via deep learning networks, trained in stages of

283 Molecular typing was done by repetitive-sequence PCR to define dis

284 nce of semiautomated RFLP compared to manual typing was excellent, with high discriminatory index (0.

285 HLA typing was performed for 449 participants.

286 HLA typing was performed in 4 patients, all of whom carried

287 Molecular typing was performed in almost all studies, with pulse f

288 Multilocus sequence typing was successfully completed on 494 isolates of Str

289 virus isolation and comprehensive molecular typing were performed.

290 al data and whole-genome multilocus sequence typing (wgMLST) of clinical and environmental isolates.

291 est this prediction in the domain of skilled typing, where actions are easy to record and errors easy

292 son with results of multigene sequence-based typing, whereas performance in rapid detection of clarit

293 protein 1 (NS1) over a broad diagnostic and typing window with high sensitivity, specificity, extend

294 dosis is difficult but necessary, and tissue typing with adequate technology available at referral ce

295 Pairing HLA typing with COVID-19 testing where feasible could improv

296 posure prophylaxis (PrEP), we performed KSHV typing with K1 open reading frame Sanger and KSHV whole-

297 d identify 43 genetically diverse progeny by typing with microsatellites and 9230 single-nucleotide p

298 HLA typing with NGS should prove useful to select participan

299 and pyrosequencing under the term 'NGS+' for typing Y-STRs and Y-chromosomal single nucleotide polymo

300 Our typing yielded 84.4% (411/487) concordance with traditio