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1 e RNA scaffold and a domain required for DNA unwinding.
2 separate from the one leading to repetitive unwinding.
3 shaped hexamers that encircle DNA for duplex unwinding.
4 to gain access to ssDNA and facilitating DNA unwinding.
5 tations, blocks on either strand inhibit CMG unwinding.
6 iation that functions beyond its role in RNA unwinding.
7 ifically with the excluded DNA strand during unwinding.
8 nterstrand distance and can only elongate by unwinding.
9 trand cross-link in the dsDNA that prevented unwinding.
10 ng structural and mechanistic aspects of DNA unwinding.
11 elucidate the structural basis of duplex DNA unwinding.
12 ivities, including DNA binding, nicking, and unwinding.
13 g several kinetic parameters associated with unwinding.
14 endent ATPase activity and the extent of RNA unwinding.
15 ell it tolerates potential roadblocks to DNA unwinding.
16 s the degree to which re-winding counteracts unwinding.
17 gions that depend strongly on eIF4A-mediated unwinding.
18 have mostly been ignored with regard to DNA unwinding.
19 significantly affecting ATP-dependent duplex unwinding.
20 ance of the SEW model for hexameric helicase unwinding.
21 the coupling between ATP hydrolysis and RNA unwinding.
22 into the Brr2 helicase active site ready for unwinding.
23 and bind double-stranded RNA (dsRNA) during unwinding.
24 spots (5' GCTGGTGG 3') recognized during DNA unwinding.
25 ch -10 element; a sequence essential for DNA unwinding.
26 to the mechanical functions required for DNA unwinding.
27 sed, but HypaCas9 had much-reduced on-target unwinding.
28 licase can allow for increased efficiency of unwinding.
29 the Thermobifida fusca type I-E Cascade: (1) unwinding 11 bp of dsDNA at the seed-sequence region to
30 ith the PIC and plays important roles beyond unwinding 5'-UTR structure is consistent with a recent p
31 ltifunctional protein with translocation and unwinding activities and plays a vital role in viral RNA
32 ep-X (an enhanced version of Rep) display G4 unwinding activities in vitro that are significantly hig
34 Cas9 proteins have limited dsDNA binding and unwinding activity and promiscuous guide RNA specificity
35 with eIF4G, subunits of eIF4F, enhance Ded1 unwinding activity and stimulation of preinitiation comp
36 king of a helicase monomer with undetectable unwinding activity converts it into a superhelicase that
41 ogous human and yeast DNA2 proteins, the DNA unwinding activity of Bad is cryptic and can be unmasked
42 to visualize ring assembly, DNA binding, and unwinding activity of individual Twinkle hexamers at the
43 orientations had opposite effects on the RNA-unwinding activity of the N-terminal cassette, with one
46 otein, the C-terminal helicase domain had no unwinding activity on RNA substrates and had significant
47 DNA end is encountered, after which the DNA unwinding activity potentiates the downstream homologous
65 no acid change in the KH domain, had reduced unwinding and binding activates on RNA and DNA substrate
67 mechanism that controls eIF4AI-mediated mRNA unwinding and can guide further mechanistic studies on o
71 topoisomerase II (TOP2) is required for the unwinding and decatenation of DNA through the induction
72 zyme complexes are highly processive, duplex unwinding and degrading machines that require tight regu
75 chanism of nucleosome unfolding in which DNA unwinding and histone protein disassembly are coupled.
76 h not only protects t-loops from promiscuous unwinding and inappropriate activation of ATM, but also
77 r data reveal conserved mechanisms for U4/U6 unwinding and indicate telestem dynamics are critical fo
79 d magnetic tweezers to monitor PcrA helicase unwinding and its relationship with the nicking activity
84 riA variant displayed wildtype levels of DNA unwinding and PriB binding in vitro These results sugges
85 st that mycobacterial HR can proceed via DSB unwinding and protein capture of the displaced 3'-OH sin
86 re has been elucidated, its mechanism of DNA unwinding and replisome interactions remain poorly under
89 anding how DNA synthesis is coordinated with unwinding and the DNA path through the CMG helicase-Pol
90 in plays critical roles in NTP-dependent RNA unwinding and translocation during viral replication.
92 -hairpin), showed a decrease in DNA binding, unwinding, and annealing, as expected for a functional R
93 enter up to three paused states rather than unwinding, and should these be prevented, in vivo fork r
94 angular and linear motions such as torsion, unwinding, and sliding in addition to the previously rep
95 ated mechanic effects like local elongation, unwinding, and softening of the DNA often remain in ques
96 on between initial DNA melting and extensive unwinding as the first initiation event requiring double
97 entify binding sites for ssDNA during SsoMCM unwinding as well as validating the importance of the SE
100 lecule Forster resonance energy transfer and unwinding assays to identify interactions that promote U
101 e-specific DNA footprinting, single-turnover unwinding assays, and unique fluorescence translocation
102 e mechanism of its helicase function, RecBCD unwinding at low adenosine triphosphate (ATP) (2-4 muM)
103 hat the Rad53 kinase restricts excessive DNA unwinding at replication forks by limiting CMG helicase
104 allele of MCM10 that stimulates initial DNA unwinding but is defective in replication elongation and
105 rmation is required for extensive origin DNA unwinding but not initial DNA melting or recruitment of
106 tical for single-stranded DNA binding during unwinding, but not the binding of G quadruplex DNA.
107 o a stepwise decrease of Brr2-mediated U4/U6 unwinding, but that unwinding is largely restored by a B
108 anism in which CMG couples ATP hydrolysis to unwinding by acting as a lazy Brownian ratchet, thus pro
116 , DnaA filaments assemble and promote duplex unwinding by engaging and stretching a single DNA strand
118 for the same substrate, hence prominent DNA unwinding by hDNA2 alone can only be observed using the
119 tured the thermodynamics of the triple helix unwinding by monitoring interactions between a collagen
121 mechanistic basis for relatively slow duplex unwinding by replicative helicases and explains how repl
122 d to the 3' ss/dsDNA junction impacts duplex unwinding by stabilizing the unpaired first base-pair an
124 to track the DNA rotations that result from unwinding by the RecBCD complex, a helicase that is invo
125 ition of DNA polymerases cause excessive DNA unwinding by the replicative DNA helicase, CMG, demonstr
131 amics was coupled to RecBCD entering into an unwinding-competent state that required a sufficiently l
132 nal dynamics of the RecBCD-DNA complex in an unwinding-competent state, arising, in part, by an enzym
135 Binding of a single ATPgammaS could stall unwinding, demonstrating highly coordinated ATP hydrolys
136 s recombinogenic single-stranded DNA ends by unwinding DNA and cutting it a few nucleotides to the 3'
137 ct in coordination, rapidly and processively unwinding DNA at the site of a double strand break.
138 is the replicative helicase responsible for unwinding DNA during archaeal and eukaryal genome replic
139 cialized helicases play an important role in unwinding DNA structures to maintain genome stability.
140 fied recombinant Drosophila melanogaster CMG unwinding DNA with single-molecule magnetic tweezers.
142 he cellular replisome that are essential for unwinding double-strand nucleic acids during the process
146 ally that such asymmetry strongly biases the unwinding efficiency of DNA helicases toward substrates
151 dramatic and unprecedented ATP-dependent DNA unwinding events by the M/R complex, which extend hundre
152 we performed single-molecule FRET-based DNA unwinding experiments using various combinations of non-
153 le of rapidly (~70-80 base pairs per second) unwinding extensive tracts (~8-10 kilobases) of double-s
154 show this arises due to both slower template unwinding following helicase-polymerase uncoupling and e
155 We demonstrate and characterize RNA duplex unwinding for DHX36 and examine the remodeling of inter-
157 have also been shown to be important for DNA unwinding, giving rise to the steric exclusion and wrapp
159 found that deficiency of BLM, or another G4-unwinding helicase, the Werner syndrome-associated helic
160 ucleoprotein A1 (hnRNP A1) as a G-quadruplex-unwinding helicase, which unfolds these stable secondary
161 k biochemical assays show that Yra1 inhibits unwinding in a concentration-dependent manner by prevent
164 in flanking helices consistent with winding/unwinding in helical propensity as the knot tightens to
165 ner proteins to increase the processivity of unwinding in the presence of the replication fork, which
167 events that occur during RecBCD-induced DNA unwinding-including initiation, processive translocation
171 tip of the beta-hairpin eliminated PriA DNA unwinding, interaction with the primosome protein PriB,
173 exclusion process, or even a separation pin, unwinding is achieved via a "dam-and-diversion tunnel" m
175 bination in vivo, whereas unregulated duplex unwinding is detrimental for recombination precision.
176 e of Brr2-mediated U4/U6 unwinding, but that unwinding is largely restored by a Brr2 cofactor, the C-
185 that, in addition to stimulating initial DNA unwinding, Mcm10 stabilizes Cdc45 and GINS association w
187 ments, lead us to suggest a replication fork unwinding mechanism whereby the N-terminal and AAA+ tier
194 nces that differ for G4 disruption and dsDNA unwinding, most likely arising from differences in the r
196 es occurs endothermically due to concomitant unwinding of a weakly base-paired [UUUU]:[GGAG] helical
197 ment of alphaM4 and hypothesize that winding/unwinding of alphaM4 represents a trigger for high-affin
198 ated by the DnaA protein, which promotes the unwinding of DNA at oriC We demonstrate that the binding
199 demonstrate that this is caused by unlawful unwinding of DNA by BLM helicase at a specific centromer
200 s(3), their use in base editing requires the unwinding of double-stranded DNA (dsDNA)-for example by
206 kely resulting from enhanced eIF4A-dependent unwinding of G-quadruplexes in the 5' untranslated regio
208 ned to quantitatively measure long-range DNA unwinding of individual DNA helicases from the archaeons
214 embrane domain (TMD), which leads to partial unwinding of the carboxyl terminus of transmembrane heli
218 cking of one of the template DNA strands and unwinding of the duplex prior to subsequent leading stra
220 or sequence complementarity, and (2) further unwinding of the entire protospacer to form a full R-loo
222 ric structural transition, involving partial unwinding of the helix-X between heme a and a3, thereby
223 he level of inward-open SERT and may lead to unwinding of the TM5 helix to allow phosphorylation.
226 hinge-like movement of TM1a and the partial unwinding of TM5, which together create a permeation pat
227 wound using DNA oligonucleotides by coupling unwinding of U4/U6 stem II with strand invasion of stem
230 th strands enter the helicase and the duplex unwinding point is internal, followed by exclusion of th
231 induced fit mechanisms to catalyse collagen unwinding prior to cleavage of individual collagen chain
238 te the core unwinding mechanism in which the unwinding rate depends on the stability of the duplex DN
240 ngly, these mutations also increased the DNA unwinding rate, suggesting that electrostatic contacts w
241 se stimulates the helicase by increasing the unwinding rate-constant (kcat), consequently the combine
247 ctively, these observations show that during unwinding, RecBCD binds to DNA in a dynamic mode that is
248 terminal) molecules are introduced into the unwinding region of two T7 promoters, and two DNA bubble
252 the course of hours whereas steps involving unwinding-rewinding of the helix proceeded over the cour
253 y active form that is capable of immediately unwinding RNA duplexes without undergoing rate-limiting
255 ication and repair processes, preferentially unwinding RNA:DNA hybrids and resolving G-quadruplex str
259 ould have implications for understanding the unwinding specificity of pNS3h, which is active only on
260 rminal domain is shown to play a role in DNA unwinding, strand annealing, and Holliday junction (HJ)
261 and that its activation is favored by slower unwinding, strategic pausing between but not before key
262 atalyze strand-exchange reaction between the unwinding substrate and a homologous single-stranded DNA
264 zing this interaction accelerates RNA duplex unwinding, suggesting that it is present in solution and
265 ons as an inhibitor of Dbp2-dependent duplex unwinding, suggestive of a cycle of unwinding and inhibi
266 g, and the time between RepC nicking and DNA unwinding, suggests that RepC and PcrA form a protein co
269 ontributions with the excluded strand during unwinding, termed steric exclusion and wrapping (SEW).
270 oms exhibits visible-light-driven reversible unwinding, that is, a cholesteric-nematic phase transiti
273 helicase activity, which is responsible for unwinding the DNA while it is being transported to a rec
275 hestrates replication restart in bacteria by unwinding the lagging-strand arm of abandoned DNA replic
279 hUPF1 must bind a ssNA segments to initiate unwinding they also raise the possibility that hUPF1 has
280 on, initiating directional target DNA strand unwinding to allow segmented base-pairing with crRNA.
281 of the traditional steric exclusion model of unwinding to also include significant contributions with
283 (Cas) protein Cas9 begin with RNA-guided DNA unwinding to form an RNA-DNA hybrid and a displaced DNA
284 the existing SE model of hexameric helicase unwinding to include contributions from the excluded str
286 viral replication and increase the helicase-unwinding turnover rates by 1.7- and 3.5-fold, respectiv
290 e ATP hydrolysis to nucleic acid binding and unwinding via molecular mechanisms that remain poorly de
293 iochemical assays for RNA binding and duplex unwinding, we show that JFH-1 NS3 binds RNA much more ra
294 s unclear how bound proteins influence U4/U6 unwinding, which regions of the U4/U6 duplex the helicas
295 echnique that can simultaneously monitor DNA unwinding with base-pair resolution and binding of fluor
296 e replisome, must efficiently coordinate DNA unwinding with priming and synthesis to complete duplica
299 ere mutated and shown to generally lower DNA unwinding without negatively affecting the ATP hydrolysi