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1 MerR acts as a repressor and activator of P (mer) .
2 long-lived kinetically trapped states (>=90-mer).
3 h k, a window length w and an order on the k-mers.
4 supports exact presence/absence queries of k-mers.
5 ty, which measures the sparsity of sampled k-mers.
6 been hospitalized with laboratory-confirmed MERS.
7 based on representing data sets as sets of k-mers.
8 to consensus fingerprints constructed from k-mers.
9 atic syntheses of polysaccharides as long 92-mers.
10 applied to the transcript-sequence-derived k-mers.
11 memory costs compared to methods that use k-mers.
12 ., SARS-1, Middle East respiratory syndrome [MERS]).
13 assemble and test the same enhancers as 192-mers, 354-mers and 678-mers and observe sizable differen
15 -3') with 2'-O-methyl modifications and a 21-mer (5'-rCrArUrCrCrUrCrUrArGrArGrGrArUrArGrArArUrG-3'),
16 achieved 100% sequence coverage for both a 6-mer (5'-rGmUrArCmUrG-3') with 2'-O-methyl modifications
17 1, -A1*002, -B*008, and -B*017) to ~61,000 8-mer, 9-mer, and 10-mer peptides derived from the full pr
18 us communities in the Torres Strait Islands: Mer, a remote island where a traditional diet predominat
22 he long-range interaction patterns between k-mers amino acids to predict protein crystallizability.
25 tated four CD-active peptides, namely the 33-mer and peptides containing the DQ2.5-glia-alpha1a/DQ2.5
29 fed at 100% maintenance energy requirements (MER) and the effect of sub-optimal restricted feeding on
30 002, -B*008, and -B*017) to ~61,000 8-mer, 9-mer, and 10-mer peptides derived from the full proteomes
34 single nucleotide variants, plastomes and k-mers associated with retrotransposons reveals two indepe
40 ent tools, ranging from ultra-fast low-RAM k-mer-based database search to fully exhaustive gapped DNA
41 at performs maximum likelihood analyses, a k-mer-based set difference algorithm, and random forest al
42 EC classification and annotation; (ii) the k-mer-based tools (including PPR-Hotpep, CUPP and eCAMI) p
44 on into magnetite were accessible at both pH(MER) because the formed magnetite was not reducible unde
45 complex (IC), the template in the expanded 7-mer bubble positions the RNA and NTP analog UTPalphaS, w
46 All these A*02:01-restricted epitopes were 9-mers but, interestingly, we also identified and validate
47 ergence of Middle East Respiratory Syndrome (MERS) cases with a high case fatality rate stresses the
48 ltidomain protein that requires a minimum 12-mer chondroitin-4-sulfate molecule for specific, high af
51 ctive of host taxonomy and that prediction k-mer composition improves with increasing k-mer length fo
56 , in that OMH is sensitive not only to the k-mer contents of the sequences but also to the relative o
58 Remdesivir (GS-5734) effectively inhibited MERS coronavirus (MERS-CoV) replication in vitro, and sh
59 iation of RBV/rIFN with 90-day mortality and MERS coronavirus (MERS-CoV) RNA clearance using marginal
61 neered a synthetic DNA vaccine targeting the MERS coronavirus Spike (S) protein, the major surface an
62 n (RBD) of Middle East respiratory syndrome (MERS) coronavirus spike, mediates viral entry using pseu
64 s well as the closely related SARS-CoV-1 and MERS coronaviruses, is restricted to BSL-3 facilities.
65 (SARS) and Middle East respiratory syndrome (MERS) coronaviruses (CoVs) are zoonotic pathogens with h
67 S)-CoV and Middle East respiratory syndrome (MERS)-CoV are epidemic zoonotic CoVs that emerged at the
68 ructures that were antiviral against IAV and MERS-CoV along with the filoviruses Ebola and Marburg an
71 We infected cells from Eptesicus fuscus with MERS-CoV and maintained them in culture for at least 126
72 ant differences in FP Ca(2+) interactions of MERS-CoV and SARS-CoV FP despite their high sequence sim
73 miological investigation was conducted among MERS-CoV case patients (cases) and their household conta
77 hermal calorimetry showed an approximate 1:1 MERS-CoV FP to Ca(2+) ratio, as opposed to an 1:2 SARS-C
78 utant array in which E and D residues in the MERS-CoV FP were substituted with neutrally charged alan
81 ng recombinant wild-type and ORF8b-deficient MERS-CoV further confirmed the suppressive role of ORF8b
82 investigated whether Ca(2+) is required for MERS-CoV fusion by screening a mutant array in which E a
85 st SARS-CoV-2 that also inhibit SARS-CoV and MERS-CoV in vitro We found that 17 of these inhibit SARS
89 ber 2019, 2499 laboratory-confirmed cases of MERS-CoV infection, including 858 deaths (34.3% mortalit
96 d and characterized type I IFN antagonism of MERS-CoV open reading frame (ORF) 8b accessory protein.
98 is important for IKKepsilon activation, and MERS-CoV ORF8b suppresses type I IFN expression by compe
99 vancements made by studying the SARS-CoV and MERS-CoV outbreaks have provided a foundation for unders
100 developed in response to prior SARS-CoV and MERS-CoV outbreaks that can serve as resources for devel
104 tion with the PDF2180 spike does not require MERS-CoV receptor DPP4 and antibodies developed against
106 induced clinical disease, strongly inhibited MERS-CoV replication in respiratory tissues, and prevent
108 {CI}, .73-1.44]; P = .87) or with more rapid MERS-CoV RNA clearance (adjusted hazard ratio, 0.65 [95%
110 e, we applied technology previously used for MERS-CoV to produce a prefusion-stabilized SARS-CoV-2 sp
111 at were persistently infected with DeltaORF5 MERS-CoV were resistant to superinfection by wildtype vi
112 monstrate that intracellular Ca(2+) enhances MERS-CoV wild-type (WT) PP infection by approximately 2-
113 oV) or Middle East respiratory syndrome CoV (MERS-CoV) also use bacterial components to modulate infe
114 a-CoVs Middle East respiratory syndrome-CoV (MERS-CoV) and SARS-CoV and the gamma-CoV infectious bron
115 S-CoV), Middle East respiratory coronavirus (MERS-CoV) and SARS-CoV-2, have been linked back to vario
116 iddle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavi
117 iddle East respiratory syndrome coronavirus (MERS-CoV) are two highly transmissible and pathogenic vi
118 iddle East respiratory syndrome coronavirus (MERS-CoV) have revealed that delayed chain termination i
119 iddle East respiratory syndrome coronavirus (MERS-CoV) infections pose threats to public health world
120 iddle East respiratory syndrome coronavirus (MERS-CoV) is a highly pathogenic human coronavirus causi
121 iddle East respiratory syndrome coronavirus (MERS-CoV) is a lethal zoonotic pathogen that was first i
122 iddle East respiratory syndrome coronavirus (MERS-CoV) is a major emerging infectious disease with zo
123 iddle East respiratory syndrome coronavirus (MERS-CoV) is the causative agent of a severe respiratory
125 iddle East respiratory syndrome coronavirus (MERS-CoV) poses an ongoing threat to public health world
126 734) effectively inhibited MERS coronavirus (MERS-CoV) replication in vitro, and showed efficacy agai
127 with 90-day mortality and MERS coronavirus (MERS-CoV) RNA clearance using marginal structural modeli
129 iddle East respiratory syndrome coronavirus (MERS-CoV) with eukaryotic proteins that may be potential
131 iddle East respiratory syndrome coronavirus (MERS-CoV), and the most recently emerged SARS-CoV-2.
132 CoV-2, Middle East respiratory syndrome CoV (MERS-CoV), bat CoV HKU5 expressing the SARS-CoV-1 spike,
134 iddle East respiratory syndrome coronavirus (MERS-CoV), the spike (S) protein is the main determinant
135 iddle East respiratory syndrome coronavirus (MERS-CoV), two other highly pathogenic coronavirus spill
143 her beta-coronaviruses, such as SARS-CoV and MERS-CoV, and might become an important tool for structu
146 with the related coronaviruses SARS-CoV and MERS-CoV, and the vast experience with other common RNA
148 ighly pathogenic coronaviruses, SARS-CoV and MERS-CoV, have been controversial in terms of their prot
149 re no efficacious drugs and vaccines against MERS-CoV, increasing its potential to cause a public hea
153 h prior to inoculation completely prevented MERS-CoV-induced clinical disease, strongly inhibited ME
169 nment-free, stochastic models derived from k-mer distributions representing reference genome sequence
171 ncrease the melting temperature of both an 8-mer DNA duplex and a hairpin with a stem of 6-nt dependi
173 ough minimal activation was observed with 80-mer duplex DNA, the optimal effector for Tel1 activation
176 on the current knowledge and perspectives on MERS epidemiology, virology, mode of transmission, patho
178 dentified and validated an unusually long 16-mer epitope peptide restricted by A*02:01, HRVC(1791-180
182 ed analyses is genome profiling, where the k-mer frequencies within raw sequencing reads are analyzed
183 cally ill patients with laboratory-confirmed MERS from 14 hospitals in Saudi Arabia diagnosed between
186 mpling while considering a weight for each k-mer; i.e. the higher the weight of a k-mer, the more lik
187 he short ICL-unhooked oligonucleotide (a six-mer in our study) by Pol eta providing a barrier to furt
188 ggest that the transcriptional regulation of mer in T. thermophilus is both similar to, and different
190 ormation and flexibility of the individual n-mers in oligo-(9,9-dioctylfluorene) from controlled Suzu
193 rithm for simplifying variation graphs for k-mer indexing without losing any k-mers in the haplotypes
194 fficient to completely dissociate the Bfr 24-mer into protein dimers, and the reversibility and kinet
196 vastly different light-switching properties: mer is "on", trans is "off", and cis switches from "off"
197 omputational analyses suggested that this 12-mer is highly labile and that apparent on-MHC trimming r
203 Boran cattle fed at sub-optimal and optimal MER levels and characterised their rumen microbial compo
204 ion of two Middle East respiratory syndrome (MERS)-like bat CoVs using exogenous protease treatment.
205 und that the spike protein of PDF2180-CoV, a MERS-like virus found in a Ugandan bat, could mediate in
206 the entire operon and a second promoter (P (mer) ), located within merR, is responsive to Hg(II).
209 r method as a special case, but unlike the k-mer method, it is convenient for Nubeam to account for G
210 icantly outperform shallow CNNs as well as k-mer methods in the discovery of tissue-specific sites bo
211 nge of nanoentity types and sizes (dimers, n-mers, micelles, colloids, etc.), each having their own u
212 tion, we show that the likelihood of a DNA 5-mer motif being targeted by SHM is not the same at diffe
213 Here, we use Skip-Gram word2vec to embed k-mers, obtained from 16S rRNA amplicon surveys, and then
215 as the reciprocal value of how often this k-mer occurs approximately in the genome, i.e. with up to
216 tinct pores that can each accommodate the 12-mer of chondroitin-4-sulfate, suggesting a model for rec
220 manner analogous to yeast and humans in a 25-mer oligonucleotide arising from incisions at 15 nt from
221 ity into the backbone such that a full PS 16-mer oligonucleotide is comprised of 215 distinct stereoi
227 , and esIgG(4) antibodies directed at 58 (15-mer) overlapping peptides, covering the entire sequence
228 health worldwide, making an understanding of MERS pathogenesis and development of effective medical c
229 therapy was commonly used in critically ill MERS patients but was not associated with reduction in 9
232 hemokine ligand (CCL) 8 and synthesized a 16-mer peptide (BK1.1) based on this interface region in ev
234 of HLA-DR1 presenting the immunodominant 20-mer peptide 5T4(111-130), combined with molecular dynami
236 tion-resistant gluten peptides (synthetic 33-mer peptide and pentapeptide epitopes) under static simu
238 oupling of complex fragments, including a 20-mer peptide fragment analog of Exendin(9-39) on solid su
239 ertoires using a bacterial display random 12-mer peptide library and next-generation sequencing (NGS)
240 trophysiological recordings, leading to an 8-mer peptide that prevented alpha-Cbtx inhibition of nACh
244 a nested set of N-terminally extended 10-20-mer peptides (RA) (n) AAKKKYCL covalently bound to the h
245 and -B*017) to ~61,000 8-mer, 9-mer, and 10-mer peptides derived from the full proteomes of 82 SIV a
247 also generalized to extract characteristic k-mer peptides for all the Swiss-Prot enzymes classified b
260 lycan assembly (AGA) enables access to a 100-mer polysaccharide via a 201-step synthesis within 188 h
261 he k-mer embedding space captured distinct k-mer profiles that mapped to specific regions of the 16S
262 ombination, trimming of an HLA-B*08-bound 12-mer progressed at a considerable rate, albeit still slow
263 phine compound to a cysteine-substituted, 11-mer protein ring triggers supramolecular self-assembly,
264 builds upon LAVA by improving the speed of k-mer querying as well as the accuracy of the genotyping s
265 cell culture, the addition of a 3-O-S HS 12-mer reduced both tau cell surface binding and cellular u
270 sphodiesterase catalytic activity toward a 5-mer RNA oligonucleotide containing a 2',3'-cyclic phosph
271 al a specific area of high glycan density on MERS S that results in the formation of oligomannose-typ
272 th coronavirus infection (defined as SARS-1, MERS, SARS-CoV-2, and other coronavirus) and bacterial/f
273 implementation of STing uses an innovative k-mer search strategy that eliminates the computational ov
276 g nonprimed binding regions, and bicyclic 14-mer SFTI-1 analogues blocking both, primed and nonprimed
279 or DPP4 and antibodies developed against the MERS spike receptor-binding domain and S2 portion are in
280 infected cells expressing coronavirus (SARS, MERS) spike as a biosecure alternative to assays involvi
281 is remarkably facilitated by a localized 16-mer stoichiometry in the periplasmic-most coupling domai
284 ell-documented regulation of proteobacterial mer systems, possibly representing an early step in the
286 or probe design by identifying approximate k-mers that are unique to a genome or that are present in
288 -CoV-1 and Middle East respiratory syndrome (MERS), the development of therapeutic antibodies and vac
290 ion of antibodies to SARS-CoV-2, SARS-CoV-1, MERS, three circulating coronavirus strains (HKU1, 229E,
294 Here, we report the vanadium(III) complex mer-[V(ddpd)(2)][PF(6)](3) yielding phosphorescence arou
295 ive virus challenge of animals given SARS or MERS vaccines resulted in vaccine hypersensitivity react
296 eloped a unit of protein structure-a van der Mer (vdM)-that maps the backbone of each amino acid to s
297 By down-weighting frequently occurring k-mers, we are able to meet both objectives: (i) avoid exc
298 ospitalized adults with laboratory-confirmed MERS were randomly assigned to receive recombinant inter