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1 hibiting splicing at that exon's alternative 3' splice site.
2 g components that recognize either the 5' or 3' splice site.
3 re than 13 ribonucleotides downstream of the 3' splice site.
4 tion of nucleotide 'C' at position -3 of the 3' splice site.
5 idine (Py) tract consensus sequence near the 3' splice site.
6 thout formation of a splicing complex with a 3' splice site.
7 ate the recognition of weak Py-tracts at the 3' splice site.
8 proteins through activation of the optimized 3' splice site.
9 to authentic substrates that lack a U12-type 3' splice site.
10 aring AT at the 5' splice site and AC at the 3' splice site.
11 ated at the 5' splice site, branch site, and 3' splice site.
12 S, ESSV, which regulates splicing at the vpr 3' splice site.
13 be synthesized as much as an hour before the 3' splice site.
14 efficiency caused by the intron's suboptimal 3' splice site.
15 th a preference for 70-80 nt upstream of the 3' splice site.
16 prespliceosomal complex A requires an active 3' splice site.
17 r shorter spacers between the snoRNA and the 3' splice site.
18 me appears to be unable to scan for a distal 3' splice site.
19 a sequence that highly resembles a bona fide 3' splice site.
20 n the presence of a suboptimal non-consensus 3' splice site.
21 n by directly interacting with the AG at the 3' splice site.
22 d at the polypyrimidine tract of the default 3' splice site.
23 ions with the 2'- and 3'-oxygen atoms at the 3' splice site.
24 cing of a pre-mRNA with an optimized nt 3225 3' splice site.
25 SE4 also functions on a heterologous 3' splice site.
26 onically located with respect to the nt 3605 3' splice site.
27 2 is spliced predominantly using the nt 3605 3' splice site.
28 ly conserved, and closely distributed to the 3' splice site.
29 nals: a 5' splice site, a branch site, and a 3' splice site.
30 ex, which assembles across the intron at the 3' splice site.
31 an ATP-dependent process requiring an intact 3' splice site.
32 e 5' splice site and the terminator with the 3' splice site.
33 (65) recognize a polypyrimidine tract at the 3' splice site.
34 or with critical roles in recognition of the 3'-splice site.
35 ng a potential cis-regulatory element at the 3'-splice site.
36 by mutations and increased distance from the 3'-splice site.
37 e of binding of the guanosine specifying the 3'-splice site.
38 m A(C)' to A(C) appears to require an intact 3'-splice site.
39 cleotides from the 3'-splice site and an AAG 3'-splice site.
40 ition of exons that are flanked by the HIV-1 3' splice sites.
41 ize polypyrimidine tract signals adjacent to 3' splice sites.
42 lice site that interacts with and sequesters 3' splice sites.
43 tly inhibiting use of intron-proximal 5' and 3' splice sites.
44 by point mutations that improve their 5' or 3' splice sites.
45 of the U1/U11 site that is characteristic of 3' splice sites.
46 form long-range interactions with the 5' and 3' splice sites.
47 combinations were optimal for distinguishing 3' splice sites.
48 65 to the polypyrimidine tracts of repressed 3' splice sites.
49 for and utilize alternative branch sites and 3' splice sites.
50 0 nucleotides strongly activated alternative 3' splice sites.
51 hile allowing flexibility in the location of 3' splice sites.
52 by enhancing the binding of U2AF(65) to weak 3' splice sites.
53 ent for SF1/mBBP-U2AF complexes assembled at 3' splice sites.
54 occurred exclusively at the original 5' and 3' splice sites.
55 undreds of introns with adjacent alternative 3' splice sites.
56 alternative 5' splice sites, and alternative 3' splice sites.
57 rly spliceosome components bound proximal to 3' splice sites.
58 sensus sequence preceding the major class of 3' splice sites.
59 iral late gene transcripts that contain weak 3' splice sites.
60 ing (AS) by differential selection of 5' and 3' splice sites.
61 p chemistry of precursors with inappropriate 3'-splice sites.
62 precedented RNA motifs to select the 5'- and 3'-splice sites.
63 uired for the initial recognition of 5'- and 3'-splice sites.
64 on similarly in activating regulated 5'- and 3'-splice sites.
65 ation of Intron-Exon and Exon-Intron (5' and 3') splice sites.
66 In the case of SR45, the use of alternative 3' splice sites 21 nucleotides apart generates two alter
67 ong branch site (BS), a long distance to the 3' splice site (3' SS), and a weak polypyrimidine (Py) t
68 ctions between the 5' splice site (5'ss) and 3' splice site (3'ss) were observed in human/mouse, indi
71 ains three 5' splice sites (5' ss) and three 3' splice sites (3' ss) normally used in HPV16(+) cervic
72 ites; (iii) divergent evolution of C.elegans 3' splice sites (3'ss) and (iv) distinct evolutionary hi
73 cy distribution of mutation-induced aberrant 3' splice sites (3'ss) in exons and introns is more comp
76 d sequences of previously published aberrant 3' splice sites (3'ss) that were generated by mutations
77 s, pyrimidine-rich regions [poly(Y) tracts], 3' splice sites (3'SS), and sometimes enhancer elements.
78 or samples, we show that hundreds of cryptic 3' splice sites (3'SSs) are used in cancers with SF3B1 m
79 ith aberrant pre-mRNA splicing using cryptic 3' splice sites (3'SSs), but the mechanism of their sele
80 promoted by cytosine at rs609621 in the NSE 3' splice-site (3'ss), which is predominant in high canc
81 otein interactions involving the branch site-3' splice site-3' exon region during yeast pre-mRNA spli
84 n definition" mechanism, in which the 5' and 3' splice sites (5'ss, 3'ss, respectively) are initially
85 e we show that the efficiency of splicing at 3' splice site A2, which is used to generate Vpr mRNA, i
86 endent introns containing alterations of the 3' splice site AC dinucleotide or alterations in the spa
87 Five 5' splice sites (donor sites) and six 3' splice sites (acceptor sites) that are highly conserv
89 Our results provide a mechanism for exon 16 3' splice site activation in which a coordinated effort
92 retains the IGS extension, and with 5'- and 3'-splice site analogues that differ in their ability to
95 RNA expression and splicing at the proximal 3' splice site and enhanced Akt phosphorylation and expr
96 loosely associated tri-snRNP, sequesters the 3' splice site and prevents its interaction with the aut
97 e 5' splice site, components recognizing the 3' splice site and proteins thought to connect them.
99 ssential splicing factor that recognizes the 3' splice site and recruits the U2 snRNP to the branch p
100 investigated the late-stage-specific nt 3605 3' splice site and showed that it has suboptimal feature
101 ntron can inhibit splicing to the downstream 3' splice site and that this inhibition is independent o
104 ce site polymorphisms, most notably a strong 3' splice site and the presence of intronic motifs downs
105 ) binding sites, are located between the two 3' splice sites and have been identified as regulating a
106 otide branch point sequence (BPS) located at 3' splice sites and participates in the assembly of earl
107 isitely sensitive to the sequence context of 3' splice sites and to small structural differences betw
109 ringing the 5'-splice site together with the 3'-splice site and catalytic core elements at JII/III.
110 together to identify the 5 splice site, the 3 splice site, and the branchsite (BS) of nascent pre-mR
111 be alternatively recognized as either 5' or 3' splice sites, and the dual splicing is conceptually s
112 in CA-RNA are within 50 nucleotides of 5' or 3' splice sites, and the vast majority of exons harborin
113 and the entire 3' exon, including the mutant 3' splice site, are accessible and can be removed by nuc
116 we propose a role for Cwc21p positioning the 3' splice site at the transition to the second step conf
117 5' splice sites at nt 232 and nt 898 and two 3' splice sites at nt 510 and nt 3355 can be identified.
118 These chimeras contain discernable 5' and 3' splice sites at the RNA junction, indicating that the
119 ice site alternatively splices to a proximal 3' splice site (at nucleotide 3225) to express L2 or to
122 te is recognized in the absence of an active 3' splice site but that formation of the prespliceosomal
123 RNA expression and splicing at the proximal 3' splice site, but activation-rescued viral RNA express
124 lly present between the branch point and the 3' splice site by the large subunit of the essential spl
126 s splicing at several highly conserved HIV-1 3' splice sites by binding 5'-UAG-3' elements embedded w
127 The relative use of a dual site as a 5' or 3' splice site can be accurately predicted by assuming c
128 regulatory elements in 4.1R pre-mRNA govern 3' splice site choice at exon 2 (E2) via nested splicing
133 shift toward usage of the adjacent proximal 3' splice site (closer to the 5' end of the intron).
136 SV polyadenylation in the context of the NRS-3' splice site complex, which is thought to bridge the l
137 th SF3A1 mediates contact between the 5' and 3' splice site complexes within the assembling spliceoso
138 essentially a composite of canonical 5' and 3' splice-site consensus sequences, with a CAG|GURAG cor
139 Tb(3+) cleavage was redirected to the 5' and 3' splice sites, consistent with metal-dependent activat
141 modify its own pre-mRNA to create a proximal 3' splice site containing a noncanonical adenosine-inosi
142 c cells follow C. elegans consensus rules of 3' splice site definition; a short stretch of pyrimidine
146 e and stabilize a conformation competent for 3'-splice site docking, thereby promoting exon ligation.
147 actor (U2AF(65)) cooperatively recognize the 3' splice site during the initial stages of pre-mRNA spl
148 ng the AG dinucleotide that functions as the 3' splice site during the second transesterification ste
149 iously unrecognized role in the selection of 3' splice sites during the second step of splicing.
150 ZRSR2 is involved in the recognition of 3'-splice site during the early stages of spliceosome as
152 t exons splice differentially to alternative 3' splice sites far downstream in exon 2'/2 (E2'/2).
153 late RNAs and for selection of the proximal 3' splice site for BPV-1 RNA splicing in DT40-ASF cells,
156 s distinguishes the guanosine at the correct 3'-splice site from other guanosine residues, the faster
158 tic cells preferring to splice at the distal 3' splice site (furthest from the 5' end of the intron)
159 sites and the RNA structure near the 5' and 3' splice sites has fueled speculation that such protein
160 lementary mechanisms of U2AF recruitment and 3' splice site identification exist to accommodate diver
161 Bioinformatic analysis revealed that the 3' splice sites identified in three of these putative IR
162 ginine (SR)-rich proteins activate a cryptic 3' splice site in a sense Alu repeat located in intron 4
164 We found that the use of an alternative 3' splice site in intron 6 generates a unique p53 isofor
165 ted genes that spliced in-frame to a cryptic 3' splice site in the Neo coding sequence and expressed
167 165 b (resulting from alternative usage of a 3' splice site in the terminal exon) is protective for k
169 e ESS inhibits use of the suboptimal nt 3225 3' splice site in vitro through binding of cellular spli
171 yrimidine (Py) signals of the major class of 3' splice sites in human gene transcripts remains incomp
172 ranchsites, polypyrimidine tracts and 5' and 3' splice sites in the intron databases and exonic splic
174 rol intrasplicing at a subset of alternative 3' splice sites in vertebrate pre-mRNAs to generate prot
180 ine tract between the branch point A and the 3' splice site is associated with increased exon skippin
181 urther studies demonstrated that the nt 3605 3' splice site is controlled by a novel exonic bipartite
185 stest introns are gone nearly as soon as the 3' splice site is transcribed and that introns have dist
186 dence that use of germline-specific proximal 3' splice sites is conserved across Caenorhabditis speci
187 We show that evolutionary progression of 3' splice sites is coupled with longer repressive uridin
188 onserved region between the branch point and 3'-splice site is primarily unstructured and that MBNL1
189 uence arrangements exist, however, including 3' splice sites lacking recognizable Py tracts, which ra
190 f a second CU-rich upstream of the mini-exon 3' splice site led to a decline in mini-exon splicing, i
193 how that U2AF1 mutations alter the preferred 3' splice site motif in patients, in cell culture, and i
194 inalis introns have a highly conserved 12-nt 3' splice-site motif that encompasses the branch point a
195 n conformation adopted late in splicing by a 3' splice-site mutant, invoking a mechanism for substrat
196 site of the complex, which is arrested by a 3' splice site mutation, can accept a normal 3' splice s
198 xon ligation, disrupting stem IIa suppressed 3' splice site mutations, and disrupting stem IIc impair
199 tion of exon skipping and tandem alternative 3' splice sites (NAGNAGs) were more divergent than other
201 phenotype of the A-to-G substitution in the 3' splice site of BBS8 exon 2A (IVS1-2A>G mutation) in t
202 ntisense oligonucleotide (AON) targeting the 3' splice site of ClC-1 exon 7a reversed the defect of C
205 l mutation is a single point mutation in the 3' splice site of exon 4 leading to an exon extension an
207 erence reduces the intrinsic strength of the 3' splice site of exon 7 2-fold, whereas the strength of
213 ptimal position about 70 nts upstream of the 3' splice site of the host intron is critical for effici
215 lated polymerase also accumulates around the 3' splice sites of constitutively expressed, endogenous
217 the active sites for cleavage at the 5' and 3' splice sites of precursor tRNA are contained within S
220 exon splicing with Mbnl binding near either 3' splice site or near the downstream 5' splice site, re
223 cellular transcripts that spliced to cryptic 3' splice sites present either within the targeting vect
224 her, the fusion transcripts utilized cryptic 3' splice sites present in the adjacent intron or genera
225 ted exon inclusion, whereas binding near the 3' splice site promoted either exon skipping or inclusio
226 s to identify important functional groups in 3' splice site recognition and catalysis, we establish h
227 on inclusion in neural cells while weakening 3' splice site recognition and contributing to exon skip
228 ylated SF1 loop are required for cooperative 3' splice site recognition by the SF1-U2AF(65) complex (
230 gate the molecular mechanism and dynamics of 3' splice site recognition by U2AF65 and the role of U2A
231 ght to determine how mutations affecting the 3' splice site recognition factor U2AF1 alter its normal
233 rformed in fission yeast support a model for 3' splice site recognition in which the two subunits of
235 he small subunit of U2AF, which functions in 3' splice site recognition, is more highly conserved tha
236 s is not predicted by the model for metazoan 3' splice site recognition, we sought introns for which
238 ssociations of proteins with the branch site-3' splice site region during spliceosome assembly and ca
239 in the frequency of three base pair gaps at 3' splice sites relative to nearby exon positions in bot
240 hat SR45 recruits U1snRNP and U2AF to 5' and 3' splice sites, respectively, by interacting with pre-m
242 Our microarray analysis shows changes in 3' splice site selection at elevated temperature in a su
246 icing factor U2AF plays an important role in 3' splice site selection, but the division of labor betw
251 ant MDS patient samples demonstrate aberrant 3' splice-site selection associated with increased nonse
252 ence that SF2/ASF and hnRNPA1 play a role in 3'-splice site selection involving the use of a non-cano
256 with the widespread occurrence of potential 3' splice site sequences in the introns of cellular gene
258 uire the snRNP-binding sites or a downstream 3' splice site, SR proteins were sufficient to stimulate
262 lso seen: Effective enhancers, silencers and 3' splice sites tend to be single stranded, and effectiv
265 plicing in germline cells occurs at proximal 3' splice sites that lack a preceding polypyrimidine tra
268 er, changing a single nucleotide in the MVMi 3' splice site to that found in the fibrotropic strain M
269 eneracy of the genetic code allows competing 3' splice sites to be eliminated from coding regions, an
275 ivate the ESE and are required for efficient 3' splice site usage and binding of the U1 snRNP to the
277 itively influence utilization of an upstream 3' splice site via exon definition in both trans- and ci
278 g, while substitution with an unrelated weak 3' splice site was compatible with repression, implying
279 plice sites, the proximity to the downstream 3' splice site was more influential in dictating splice
280 ments showed that utilization of the nt 3605 3' splice site was not affected by SE2, which is introni
281 the spacing between the branch site and the 3' splice site were examined for their effects on splice
282 etics of splicing in vitro demonstrated that 3' splice sites were chosen competitively during the sec
283 esistance gene (Neo), a poly(A) site, but no 3' splice site] were typically expressed following inser
285 with one 5' splice site and two alternative 3' splice sites, which produce E6(*)I and E6(*)II, respe
286 expression and RNA splicing at the proximal 3' splice site while increasing use of the distal 3' spl
287 rgeting polypyrimidine (Py) tracts preceding 3' splice sites while adapting to both cytidine and urid
288 d cellular IRESs, we found that four contain 3' splice sites whose activity was required for apparent
290 osal that the human large subunit recognizes 3' splice sites with extensive polypyrimidine tracts ind
291 f the BPS, PPT, and AG dinucleotide found at 3' splice sites, with endogenous proteins assembled alon
292 that carried point mutations at or near the 3' splice site within the intergenic region separating C
294 Two of the mutations activated cryptic 5' or 3' splice sites within exonic regions; the third mutatio
296 experiments, we found a number of functional 3' splice sites within many different transcribed SVAs a
299 he second step, when the 5' exon attacks the 3' splice site, yielding mRNA and lariat-intron products
300 nucleotide), where both NAGs can function as 3' splice sites, yielding isoforms that differ by inclus
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