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1 A. thaliana contains four malic enzymes (NADP-ME 1-4) to
8 F2 are under selective constraint, but among A. thaliana accessions, AtDDF2 has a higher level of non
10 tic stresses were overrepresented between an A. thaliana autotetraploid and diploid and between two A
11 s arenosa, relatively low (~6.8%) between an A. thaliana diploid and autotetraploid and intermediate
19 ross M. truncatula, G. max, L. japonicas and A. thaliana, as well as construction and phylogenetic an
22 tible systems; N. tabacum 9.8% reduction and A. thaliana 12.3% reduction, but not in the resistant ho
24 r exon, and 0.6695 nucleotide structure) and A. thaliana (0.5808 for CDS, 0.5955 for exon, and 0.8839
26 pression of orthologous genes from yeast and A. thaliana that are coregulated with yeast rei1 or with
28 In contrast to allopolyploids, autopolyploid A. thaliana showed the same photosynthetic rate as diplo
30 el of nucleotide sequence divergence between A. thaliana and A. arenosa MIR172 loci is 15-25%, which
37 though mature miRNA sequences are conserved, A. thaliana and A. arenosa miRNA loci diverge rapidly in
39 d in BR-deficient and BR signaling-deficient A. thaliana mutants, resulting in clustered stomata.
40 itness among a set of geographically diverse A. thaliana accessions when grown together in a common e
49 growth in the availability of omics data for A. thaliana as well as improvements in data analysis met
51 nt an updated co-functional gene network for A. thaliana, AraNet v2, which covers approximately 84% o
52 f a genome-scale functional gene network for A. thaliana, AraNet, which was constructed by integratin
53 , which generates functional predictions for A. thaliana and 27 nonmodel plant species using an ortho
54 -A resolution crystal structure of APSR from A. thaliana (AtAPSK) in complex with beta,gamma-imidoade
55 h we have co-immunopurified with AtMSI4 from A. thaliana suspension culture cells and identified by l
56 , we compare the 24-nt siRNA complement from A. thaliana and a closely related congener with a two- t
58 tion of an unprecedented amount of data from A. thaliana, which has facilitated data-driven approache
59 member of the B-box zinc finger family from A. thaliana and contains a single conserved Zn(2+)-bindi
61 ) transporter, similar to the known one from A. thaliana, is likely absent and could even be harmful
62 report the crystal structure of PRORP1 from A. thaliana at 1.75 A resolution, revealing a prototypic
64 transcriptional analyses in loss of function A. thaliana and P. patens mutants suggest that the trans
65 ion of the defective mutants with functional A. thaliana SWEET1 inhibited glucose transport, indicati
66 d during adaptation of TEV to its novel host A. thaliana To assess the effect that host species may h
69 Targeted gene silencing of BADC isoform 1 in A. thaliana significantly increased seed oil content whe
73 the unique distribution pattern of m(6)A in A. thaliana is associated with plant-specific pathways i
76 or the existence of supercoiling activity in A. thaliana and that the plant is sensitive to quinolone
77 b in B. napus and their promoter activity in A. thaliana showed differences in the induction of the p
80 Overexpression of both EcGBF3 and AtGBF3 in A. thaliana resulted in improved tolerance to osmotic st
81 ively regulating the expression of AtLRL3 in A. thaliana, LRL genes promote rhizoid development indep
82 opment independently of AtRHD6 and AtRSL1 in A. thaliana but the regulatory interactions between auxi
84 at enhanced activation of SA biosynthesis in A. thaliana hybrids may contribute to their increased re
86 available maps with gene expression data in A. thaliana, Arabidopsis arenosa, and allotetraploids.
87 not sufficient for root hair development in A. thaliana, it suggests that there are differences in t
88 ion for anthocyanin content was dissected in A. thaliana and shown to be affected by a common regulat
89 shaped patterns of methylation diversity in A. thaliana natural populations over evolutionary timesc
90 recursors were processed more efficiently in A. thaliana than in resynthesized allotetraploids, sugge
91 senic hyperaccumulation can be engineered in A. thaliana by knocking out the HAC1 gene and expressing
92 the active sites of the BBE-like enzymes in A. thaliana suggested that 14 out of 28 members of the f
94 also exhibit parentally biased expression in A. thaliana, suggesting that there is evolutionary conse
96 ific to the suite of glucosinolates found in A. thaliana, with other combinations of glucosinolates b
100 d 34 maternally expressed imprinted genes in A. thaliana endosperm that are regulated by the DNA-deme
103 PYK10, the most abundant beta-glucosidase in A. thaliana root ER bodies, hydrolyzes indole glucosinol
104 ough the deamination of guanosine by GSDA in A. thaliana, excluding other possible sources like the d
106 press genes encoding microbial hydrolases in A. thaliana, and target the hydrolases to the apoplast c
108 t for reconstituting self-incompatibility in A. thaliana and uncovered an important role for ARC1 in
109 trategy for studying self-incompatibility in A. thaliana, we offer our perspective on what constitute
110 de molecular profile of mutations induced in A. thaliana by FN irradiation and are particularly infor
111 ter cells are able to initiate infections in A. thaliana and in C. elegans albeit, with lower mortali
112 cells are not able to initiate infections in A. thaliana and present significantly reduced virulence
113 and trans-regulation and GxE interactions in A. thaliana, laying the ground for mechanistic investiga
115 these, LATE ELONGATED HYPOCOTYL, is known in A. thaliana to regulate many stress-response genes that
118 ily through gene duplication and was lost in A. thaliana, contributing to leaf simplification in this
123 how different from the situation observed in A. thaliana mainly producing housekeeping isoprenoid met
125 nd characterization of genes and pathways in A. thaliana responsible for hybrid lethality in the A. t
126 a new model for ground tissue patterning in A. thaliana in which the ability to form a functional en
128 and stable self-incompatibility phenotype in A. thaliana and how this should be investigated and repo
130 odel suggest that the R gene polymorphism in A. thaliana may not be maintained through a tightly coup
131 d the pattern of historical recombination in A. thaliana and observed an enrichment of hotspots in it
132 ervation that the ACR2 arsenate reductase in A. thaliana plays no detectable role in arsenic metaboli
135 d maintenance of robust circadian rhythms in A. thaliana, demonstrating that metabolism has a crucial
136 pendent and -independent PTI against RKNs in A. thaliana, suggesting the existence of diverse nematod
137 eletions and insertions still segregating in A. thaliana indicates that the process of DNA loss is on
139 BBX32 (AtBBX32) represses light signaling in A. thaliana and that expression of AtBBX32 in soybean in
140 e SHR proteins function as mobile signals in A. thaliana and all of the SHR homologs physically inter
141 o required for variant-specific silencing in A. thaliana, but SUVH5 [SU(VAR)3-9 HOMOLOG 5] and SUVH6,
144 omote evolutionary and functional studies in A. thaliana, especially the MAGIC genetic reference popu
146 expressed at low levels relative to that in A. thaliana, which is associated with hypermethylation o
148 le of GBF3 in imparting drought tolerance in A. thaliana and indicate the conserved role of this gene
149 erance and root-to-shoot As translocation in A. thaliana, with PvACR3 being localized to the plasma m
154 i primarily tracked dawn or dusk, whereas in A. thaliana, a wider range of responses were observed, c
155 as been studied in several species including A. thaliana, tobacco (Nicotiana tabacum), N. benthamiana
157 also significantly reduced in virus infected A. thaliana by 19.6% but not in N. tabacum or the resist
161 protein consisting of annotated full-length A. thaliana OEP80 with an N-terminal hexahistidine tag (
162 and high methylation variability across many A. thaliana strains at that site are the strongest predi
163 S. cerevisiae, H. sapiens, D. melanogaster, A. thaliana, and E. coli, and confirm significant and co
165 eraction in a background in which the native A. thaliana CENH3 is replaced with CENH3s from distant s
167 An analogous phenomenon occurs in nonhybrid A. thaliana, in which specific classes of rRNA gene vari
173 ional modeling and spectroscopic analyses of A. thaliana GrxS14-BolA1 holo-heterodimer (BolA_H), we p
174 r controlled environmental conditions and of A. thaliana and C. hirsuta in two natural habitats.
176 oping anther tissues of young floral buds of A. thaliana, principally in developing pollen grains of
186 current knowledge of the natural history of A. thaliana from the perspective of the most closely rel
188 ed sequence variation in the complete IGS of A. thaliana WT plants and provide the reference/consensu
193 s confirmed using fluorescence microscopy of A. thaliana protoplasts transiently expressing the N-ter
194 e metabolite profiling utilizing a number of A. thaliana relatives within Brassicaceae identified a c
195 ed haplotypes in the worldwide population of A. thaliana Moreover, we found 105 single-copy genes, wh
198 cation), and gene expression (by RT-qPCR) of A. thaliana orthologue genes were performed across diffe
201 ed from self-incompatible close relatives of A. thaliana restore robust SI in several accessions that
205 nhibition of self pollen or for reversion of A. thaliana to its fully self-incompatible ancestral sta
206 he conserved correlations point to a role of A. thaliana REIL proteins in the maturation of the eukar
208 esent multiple data to show that the size of A. thaliana OEP80 is smaller than previously estimated.
210 sent a 2.6 A resolution crystal structure of A. thaliana PRMT 10 (AtPRMT10) in complex with a reactio
212 different fields of research in the study of A. thaliana has made a large contribution to our molecul
215 analyses of the natural genetic variation of A. thaliana have involved small numbers of individual pl
216 In this study, we modified the cell wall of A. thaliana by targeting the starch-binding domains of A
219 upon outcrossing, show a binding pattern on A. thaliana centromere repeats that is indistinguishable
225 allopolyploid as in the maternal progenitor A. thaliana and significantly more expressed than in the
226 sion/purification of the quinolone-resistant A. thaliana gyrase yields active enzyme that is resistan
228 SP protein level and ESP activity from seven A. thaliana ecotypes showed a positive correlation betwe
229 The present study identified a family of six A. thaliana genes that share five limited regions of seq
231 japonicus plus two reference plant species, A. thaliana and Populus trichocarpa, with annotations ba
232 tionship among four closely related species, A. thaliana, A. lyrata, Capsella rubella and Brassica ra
233 f ARC1 in reconstructing a strong and stable A. thaliana self-incompatibility phenotype, in the conte
237 wild-type Arabidopsis thaliana We show that A. thaliana CENH3-containing nucleosomes exhibit a stron
238 hese experiments now show unequivocally that A. thaliana encodes an organelle-targeted DNA gyrase tha
241 dopsis thaliana and Arabidopsis arenosa, the A. thaliana-derived rRNA genes are selectively silenced.
242 uantitative trait loci (QTLs) encoded by the A. thaliana genome that affect the frequency of postzygo
243 functional KOR1 G429R mutant encoded by the A. thaliana rsw2-1 allele displayed only oligomannosidic
246 s antibody recognized a 70-kD protein in the A. thaliana chloroplast membrane fraction which migrated
247 hat of the 12 predicted GGPPS encoded in the A. thaliana genome 10 are functional proteins that can s
248 that FCA and FPA play important roles in the A. thaliana genome in RNA 3' processing and transcriptio
251 An analysis of all known sequences in the A. thaliana kinome found that alphaC helix disorder may
252 ive walls comparable to that observed in the A. thaliana ms2 mutant, and extremely compromised germin
254 chloromethane dehalogenase cmuA gene in the A. thaliana phyllosphere correlated with HOL1 genotype,
255 underlying stem-cell niche patterning in the A. thaliana root in terms of some of the key dynamic tra
258 have simple leaves, whereas others like the A. thaliana relative Cardamine hirsuta bear complex leav
262 ock-outs of a putative moss homologue of the A. thaliana MS2 gene, which is highly expressed in the m
267 was not required for the E. coli YidC or the A. thaliana Alb3 to functionally complement the E. coli
268 uliflower Mosaic Virus 35S RNA promoter, the A. thaliana beta-expansin signal peptide, and the fluore
270 or the DNA repair factor DDB2 in shaping the A. thaliana DNA methylation landscape in the absence of
272 to or less than 5 % and are specific to the A. thaliana lineage; thus, they predictably represent so
275 ot possible at that time to show whether the A. thaliana genes encoded an active gyrase enzyme, nor w
276 eases (TAIR8, TAIR9 and TAIR10) in which the A. thaliana assembly was updated, pseudogenes and transp
279 wisted "S"-shaped conformation when bound to A. thaliana AHAS (AtAHAS) with the pyrimidinyl group ins
280 ong the phylogenetic lineage from cassava to A. thaliana, suggests that alterations in the electrogen
287 he viability of creating a set of transgenic A. thaliana plants with modified cell walls to use as a
288 ddition, a decrease in the expression of two A. thaliana Expansin genes (AtEXP5 and AtEXP8) was obser
293 cible xylan xylosyltransferase activity with A. thaliana IRX10 and with a homolog from the dicot plan
294 846 have conserved genomic arrangements with A. thaliana and candidate target jacalins, similar prima
295 in vernalization response is associated with A. thaliana accessions collected from different geograph
297 dual RFO amounts, positively correlated with A. thaliana seed vigor, to which stachyose and verbascos
300 variation in miRNAs and their targets within A. thaliana, and between A. thaliana, A. lyrata and C. r
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