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1 AMP-PNP by itself supported hydrolysis of casein and oth
2 AMP-PNP or ATPgammaS activation required both nucleotide
3 AMP-PNP, a nonhydrolyzable ATP analog, at a concentratio
6 ysable analogue 5'-adenylylimidodiphosphate (AMP-PNP) and the inhibitory effect of ATPgammaS was reve
7 le ATP analogue 5'-adenylylimidodiphosphate (AMP-PNP) to prevent the run-down of IK(IR))and the Mg2+
8 the presence of 5'-adenylylimidodiphosphate (AMP-PNP), ADP, and ATP, yielding maximal values between
9 e ATP analogue, 5'-adenylylimidodiphosphate (AMP-PNP), bound preferentially to NBD1, but upon additio
10 lls loaded with 5'-adenylylimidodiphosphate (AMP-PNP), KN93, or the CaMKII inhibitory peptide, ICl(Ca
11 nalogue of ATP, 5'-adenylylimidodiphosphate (AMP-PNP), reduced the amplitude and rate of activation o
12 le ATP analogue 5'-adenylylimidodiphosphate (AMP-PNP; 3-5 mM), the leptin-induced hyperpolarization a
13 e ATP analogues 5'-adenylylimidodiphosphate, AMP-PNP (2 mM) or beta, gamma-methylene-adenosine 5'-tri
16 n became cooperative in the presence of ADP, AMP-PNP, or ADP.Vi yielding Hill coefficients of 1.8 and
21 ted whether interactions with the ATP analog AMP-PNP and ADP can shift the conformational ensemble of
23 rfusion with the non-hydrolyzable ATP analog AMP-PNP dramatically reduce the amplitude of dBest1 curr
24 P, and cocrystallization with the ATP analog AMP-PNP suggests that binding of nucleotides regulates t
25 lish that, in the presence of the ATP analog AMP-PNP, or ADP, a maximum of six DnaC monomers bind coo
27 th either ATP or the non-hydrolyzable analog AMP-PNP, and these cycles of elongation and compression
28 presence of the ATP non-hydrolyzable analog AMP-PNP, have been performed, using the fluorescence sto
30 e presence of the ATP nonhydrolyzable analog AMP-PNP, the DnaB helicase binds polymer DNA with a site
32 tate, ATP, or a non-hydrolyzable ATP analog (AMP-PNP), with differential effects on matrix Ca(2+) buf
33 inability of the nonhydrolyzable ATP analog, AMP-PNP, to cause a similar effect is explained by the i
34 presence of the ATP nonhydrolyzable analog, AMP-PNP, the DnaB helicase fully preserves its hexameric
35 presence of the ATP nonhydrolyzable analog, AMP-PNP, the E. coli DnaB helicase preferentially binds
37 presence of the nonhydrolyzable ATP analogue AMP-PNP (adenyl-5'-yl imidophosphate), the ectonucleotid
38 GspE structures in complex with ATP analogue AMP-PNP and Mg(2+) reveal for the first time, alternatin
40 d to ADP or the nonhydrolyzable ATP analogue AMP-PNP cannot nucleate actin filaments, but addition of
41 RNA complex, and binding of the ATP analogue AMP-PNP induces a conformational change in the enzyme.RN
42 presence of the nonhydrolyzable ATP analogue AMP-PNP, the drug binding site was in a low-affinity con
43 of ADP or the non-hydrolysable ATP analogue AMP-PNP, the interaction with short ssDNA oligonucleotid
49 drolysis products, or with the ATP analogues AMP-PNP or ADP.BeF(x)() the myosin filaments are substan
50 ATP affinity but reduced ATPase activity and AMP-PNP-dependent N-terminal association, whereas the ts
51 T22I displayed enhanced ATPase activity and AMP-PNP-dependent N-terminal dimerization, indicating a
52 he magnitude at which the binding of ADP and AMP-PNP affects the affinity of DNA binding by RSCt sugg
54 of the structures presented herein, ADP and AMP-PNP bound, are new structures, and the ADP x AlF3 st
56 ween the structures of RecA bound to ADP and AMP-PNP, which differ from uncomplexed RecA only in a sl
57 head 1 is able to distinguish ATP, ADP, and AMP-PNP to signal head 2 to bind the microtubule and rel
58 sm studies with nucleotide analogues AMP and AMP-PNP, product ADP, and an analogue of the peptide sub
61 P; ADP is ineffective, whereas ATPgammaS and AMP-PNP are considerably less able to promote binding an
62 nonhydrolyzable ATP analogues ATPgammaS and AMP-PNP, however, only a single thermal transition is ob
66 TP binding was reversed by ATP, AMP-PCP, and AMP-PNP with KIs of approximately 3.2, 4.2, and 4.6 mM,
67 of 5'-adenylamido-diphosphate (AMP-PNP), and AMP-PNP- promoted association of N-termini in intact Hsp
70 SAXS analyses of ADP, ATPgammaS, ADP-Vi, and AMP-PNP-bound states in solution showed that asymmetric
71 r representative ATP hydrolysis states: APO, AMP-PNP, hydrolysis transition state ADP x AlF3, and ADP
74 y at 10 mM: for myosin II ATP-Mg(2+) = ATP = AMP-PNP (5'-adenylyl imidodiphosphate) > pyrophosphate =
81 hosphorylation of NBD1-R was reduced >75% by AMP-PNP or AMP-PCP (0.25 mM) and >50% by TNP-ATP (0.25 m
82 9D mutation strongly disrupted activation by AMP-PNP but not by ATPgammaS, indicating that these anal
84 se inhibitor KT5823 or replacement of ATP by AMP-PNP reduced NP(o), while activation of cGMP-dependen
86 f ERK2, protection from hydrogen exchange by AMP-PNP binding was observed within conserved ATP bindin
87 contrast, higher protection from exchange by AMP-PNP was observed in active ERK2 compared to inactive
88 membrane domains (TMDs) is not influenced by AMP-PNP binding, a notion confirmed by double electron-e
90 structure, the beta(TP) site was occupied by AMP-PNP and the beta(DP) site by ADP, where its binding
91 - and beta(TP)-subunits are both occupied by AMP-PNP, whereas in the earlier structure, the beta(TP)
93 was not mimicked by stable ATP derivatives (AMP-PNP or AMP-PCP) and was abolished by incubation of c
94 of this C-terminal structure also diminished AMP-PNP binding, as well as the catalytic activity of th
95 the presence of 5'-adenylamido-diphosphate (AMP-PNP), and AMP-PNP- promoted association of N-termini
96 dition of 1 mM 5'-adenylylimido-diphosphate (AMP-PNP, an inhibitor of kinesins) or incubation with ki
97 ion coefficient of the ternary complex DnaB-(AMP-PNP)-depsilonA(pepsilonA)19, s20,w = 12.4, suggests
99 anosarcina mazei PylRS complexed with either AMP-PNP, Pyl-AMP plus pyrophosphate, or the Pyl analogue
100 ower steady-state open probability following AMP-PNP addition (0.68 +/- 0.08 vs. 0.92 +/- 0.03 for wi
101 increased the apparent affinity of Hsp90 for AMP-PNP and completely inhibited the ATPase activity.
104 the presence of 5'-adenylim-idodiphosphate (AMP-PNP), the motor domain of ncd binds to the microtubu
105 The inhibitor adenylyl imidodiphosphate (AMP-PNP) induces stochastic pauses in the movement of be
106 olysable analogue adenylyl imidodiphosphate (AMP-PNP) partially substituted for ATP, although none wa
108 re effective than adenylyl imidodiphosphate (AMP-PNP), a hydrolysis-resistant ATP analog; however, th
110 g in wild type by adenylyl imidodiphosphate (AMP-PNP), a non-hydrolysable ATP analogue, is markedly d
112 or followed by 5'-adenylyl imidodiphosphate (AMP-PNP)-induced microtubule affinity purification of th
114 ell as GTP and 5'-adenylyl-imidodiphosphate (AMP-PNP), were accompanied by a corresponding decrease i
116 P, 5'-adenylyl beta, gamma-imidodiphosphate (AMP-PNP) and adenosine 5'-(alpha, beta-methylene)triphos
117 log 5'-adenylyl-beta,gamma-imidodiphosphate (AMP-PNP) similarly stabilize the packaged viral genome d
118 , and 5'-adenyl-beta,gamma-imidodiphosphate (AMP-PNP) with the two domains of functional membrane-bou
119 og 5'-adenylyl-beta, gamma-imidodiphosphate (AMP-PNP), ADP, or ADP + Pi using both dimeric (MC1) and
120 with adenylyl beta, gamma-imidodiphosphate (AMP-PNP), some protection from cold dissociation was obs
122 ue, 5'-adenylyl beta,gamma-imidodiphosphate (AMP-PNP), was investigated by using the fluorescence ani
123 ue, 5'-adenylyl-beta,gamma-imidodiphosphate (AMP-PNP), which in the gating models was proposed to bin
125 sence of ATPgammaS, adenylyl imidophosphate (AMP-PNP), ADP, diadenosine tetraphosphate and GTPgammaS.
127 inished in K464A mutants due to reduction in AMP-PNP's apparent on-rate and acceleration of its appar
128 inhibited with 1 mM of the kinesin inhibitor AMP-PNP (adenylyl-imidodiphosphate) and by anti-kinesin
130 were inhibited by the ATP synthase inhibitor AMP-PNP (gamma-imino ATP, a nonhydrolyzable ATP analog)
131 es of the protein with 55% displaying intact AMP-PNP and an unphosphorylated substrate and 45% displa
132 ystal structures of apo Pim-1 kinase and its AMP-PNP (5'-adenylyl-beta,gamma-imidodiphosphate) comple
133 bearing the modification on the ribose, MANT-AMP-PNP and MANT-ADP, and on the base, epsilonAMP-PNP an
134 th magnesium 5'-adenylylimidodiphosphate (Mg-AMP-PNP) and 3-phospho-D-glycerate (3-PG) has been deter
135 sidues from the N-terminal domain and the Mg-AMP-PNP interacting with residues from the C-terminal do
137 otubule complexes formed in 1 mM ADP, 0.5 mM AMP-PNP, suggesting that release of a single AMP-PNP mol
138 spite this apparently tight binding, neither AMP-PNP nor ATPgammaS activated even the strongest GOF m
139 TP, but in the presence of K+, Cs+, or NH4+, AMP-PNP activated casein degradation even better than AT
142 The presence of either ATP or ADP but not AMP-PNP leads to GroEL dissociation at lower pressures.
143 GroEL-alphabeta complex with Mg-ATP, but not AMP-PNP, resulted in the release of alpha monomers.
144 the presence of a nonhydrolyzable nucleotide AMP-PNP, have been imaged with the atomic force microsco
145 The ITC-determined affinity of nucleotide (AMP-PNP, ADP) binding to the npMEK1.PD0325901 complex wa
148 me as the affinity of ATP, the affinities of AMP-PNP and AMP-PCP are approximately 2 and approximatel
149 ylate cyclase inhibitors; and application of AMP-PNP, a competitive substrate for adenylate cyclase.
152 he dissociation rate on the concentration of AMP-PNP and ADP indicated that polypeptide dissociation
153 presence of the saturating concentration of AMP-PNP, the sedimentation coefficient of the hexamer is
157 isplaying transfer of the gamma-phosphate of AMP-PNP onto the substrate peptide yielding AMP-PN and a
159 ation of wild-type kinase in the presence of AMP-PNP (an unhydrolyzable ATP analog) or the autophosph
160 f RSCt for DNA is reduced in the presence of AMP-PNP and ADP in a concentration-dependent manner with
161 F(1)-ATPase, crystallized in the presence of AMP-PNP and ADP, but in the absence of azide, has been d
162 sin bound to microtubules in the presence of AMP-PNP and found close agreement with previous models d
172 tants reveal that nucleotide binding (ADP or AMP-PNP (adenosine 5'-(beta,gamma-imino)triphosphate)) i
175 0 mM KCl the addition of ATP, but not ADP or AMP-PNP, resulted in a time-dependent, linear increase i
178 g currents were repeatedly evoked in ADP- or AMP-PNP-loaded cells, but dialysis of adenosine 5'-O-(3-
183 n had no effect, whereas perfusion of ATP or AMP-PNP, a nonhydrolyzable analog of ATP, significantly
185 ssary to accommodate the cryo-EM map of "p97-AMP-PNP", suggesting a change in the orientation of N do
187 orm of scallop Ca-ATPase was occupied by Pi, AMP-PNP, AMP-PCP, or ADP despite the presence of saturat
188 n velocity measurements of the DnaB protein-(AMP-PNP)-5'-fluorescein-(dT)20 ternary complex show that
189 rom the structure of the binary complex RepA-AMP-PNP, indicating that, in equilibrium, the RepA hexam
191 t conditions, using either ATP, ATP gamma S, AMP-PNP or ADP as nucleotide cofactors, we always find t
192 AMP-PNP, suggesting that release of a single AMP-PNP molecule from the enzyme is the common rate-limi
193 that, in equilibrium, the RepA hexamer-ssDNA-AMP-PNP complex exists as a mixture of partially open st
194 structure of the tertiary complex RepA-ssDNA-AMP-PNP is very different from the structure of the bina
195 metric bacterial ABC protein that shows that AMP-PNP binds selectively to the noncanonical NBD to pre
201 likely catalysis-competent placement of the AMP-PNP and Mg(2+) components and indicates a tendency f
204 1-cis-retinal and hydroxylamine prior to the AMP-PNP incubation and by measurement of the GCAP2 conce
207 N-tail mutant had both a slower response to AMP-PNP (activation half-time of 140 +/- 20 s vs. 21 +/-
208 t exhibited a markedly inhibited response to AMP-PNP, a poorly hydrolysable ATP analogue that can nea
209 , beta,gamma-imidoadenosine 5'-triphosphate (AMP-PNP), and copper and undergoes nucleotide-dependent
210 , beta,gamma-imidoadenosine-5'-triphosphate (AMP-PNP), have been examined, using the fluorescence int
214 adenosine-5'-(beta,gamma-imido)triphosphate (AMP-PNP), even though it cannot support steady-state cat
215 adenosine-5'-(beta,gamma-imido)triphosphate (AMP-PNP), onto a substrate peptide within protein crysta
216 adenosine 5'-[beta,gamma-imido]triphosphate (AMP-PNP), a non-hydrolyzable ATP analog, has no effect o
217 adenosine 5'-(beta,gamma-imino)triphosphate (AMP-PNP) and adenosine 5'-O-(thiotriphosphate) (ATPgamma
218 denosine 5'-(beta,gamma -imino)triphosphate (AMP-PNP) or ADP, less than 10% of the LOOP1 epitopes wer
219 adenosine 5'-(beta,gamma-imino)triphosphate (AMP-PNP), and guanosine 5'-3-O-(thio)triphosphate (GTPga
220 adenosine 5'-(beta,gamma-imino)triphosphate (AMP-PNP), or other NTPs do not support the activity.
221 nformational state of the helicase, with two AMP-PNP molecules bound, has dramatically higher ssDNA-a
222 mutant channels deactivated very slowly upon AMP-PNP or ATPgammaS removal (taudeac approximately 100
223 ATP analog; however, this study mainly used AMP-PNP to focus on the role of adenine nucleotide bindi
224 ographic characterization of inactive versus AMP-PNP-liganded structures of FAK1 showed that a large
227 (108-268) holoenzyme structure (1.62 A) with AMP-PNP/Mn(2+) showed that we trapped the RIIbeta subuni
228 mulated 4-6-fold the peptidase activity with AMP-PNP present and eliminated the time lag, but KCl had
234 er segment homogenates are preincubated with AMP-PNP (EC50 = 0.65 +/- 0.20 mM), GCAP2 enhanced the re
236 domain, bound C subunit poorly, whereas with AMP-PNP, a non-hydrolyzable ATP analog, the affinity was
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