ライフサイエンスコーパス: ATAC-seq

1 e Chromatin with high-throughput sequencing (ATAC-seq).

2 ions in DNA (DNase-seq, ChIP-seq, FAIRE-seq, ATAC-seq).

3 osase-accessible chromatin using sequencing (ATAC-seq).

4 assay for transposase-accessible chromatin (ATAC-Seq).

5 y DNA in cutaneous T cell lymphoma (CTCL) by ATAC-seq.

6 landscape including DNase-seq, FAIRE-seq and ATAC-seq.

7 regions near distal enhancers, compared with ATAC-seq.

8 QTLs (caQTLs) in a European population using ATAC-seq.

9 e chromatin with high-throughput sequencing (ATAC-seq) analyses revealed transcriptional and chromati

10 ATAC-seq analysis reveals that VPE, PSE_a and four addit

11 the authors show, using CRISPR gene editing, ATAC-seq and ChIP-seq, that specific Runx1-bound enhance

12 luding ERG, GATA2, and RUNX1, as measured by ATAC-seq and ChIP-seq.

13 d correlated with chromatin accessibility by ATAC-seq and gene expression by RNA-seq in pancreatic ca

14 g to acute and chronic viral infection using ATAC-seq and RNA-seq techniques.

15 Here we exploited ATAC-seq and transcriptional profiling strategies to des

16 Here, we report the epigenomic (ATAC-seq) and transcriptomic (RNA-seq) landscapes of alp

17 CLL samples from 55 patients measured by the ATAC-seq assay.

18 e, chromatin accessibility, as determined by ATAC-seq (assay for transposase-accessible chromatin [AT

19 y micrococcal nuclease (MNase) digestion and ATAC-seq (assay for transposase-accessible chromatin [AT

20 osase-accessible chromatin using sequencing (ATAC-seq), based on direct in vitro transposition of seq

21 ate of 10%) and demonstrated how RASQUAL and ATAC-seq can provide powerful information for fine-mappi

22 ATAC-seq captures open chromatin sites using a simple tw

23 transposase-accessible chromatin sequencing (ATAC-seq), ChIP-seq, and RNA-seq reveal that IL-10 repre

24 on CREB-binding protein co-factor binding or ATAC-seq chromatin accessibility, and then identify thos

25 FANS-ATAC-seq compares favorably with published DNaseI sequen

26 g publicly available ChIP-seq, DNase-seq and ATAC-seq data are a valuable resource for the systematic

27 by analyzing ChIP-exo, chemical mapping, and ATAC-seq data from other laboratories.

28 show that DeFCoM can detect footprints using ATAC-seq data with similar accuracy as when using DNase-

29 RNA-seq, MNase-seq, DNase-seq, GRO-seq, and ATAC-seq data.

30 matin coupled to high-throughput sequencing (ATAC-seq) data, we found that the latent HIV-1 promoter

31 acterization of chromatin accessibility from ATAC-seq datasets.

32 Our data further indicate that ATAC-seq detects cell-specific regulatory elements for c

33 Single-cell ATAC-seq detects open chromatin in individual cells.

34 g single-cell technologies (e.g. single-cell ATAC-seq, DNase-seq or ChIP-seq) have made it possible t

35 riety of ChIP-seq, DNase-seq, FAIRE-seq, and ATAC-seq experiments, we show that our weight-adjusted r

36 Here, we use ATAC-seq, genome-wide histone modification mapping, and

37 osase-accessible chromatin using sequencing (ATAC-Seq) has become a fundamental tool of epigenomic re

38 assay for transposase-accessible chromatin (ATAC-seq) in four plant species (Arabidopsis thaliana, M

39 profiled DNA methylation and open chromatin (ATAC-seq) in SSEA4(+) hSSCs, analyzed bulk and single-ce

40 transposase-accessible chromatin sequencing (ATAC-seq) in two islet samples enabled us to identify sp

41 osase-accessible chromatin using sequencing (ATAC-seq) integrated into a programmable microfluidics p

42 ATAC-seq is a high-throughput sequencing technique that

43 Transposase Accessible Chromatin sequencing (ATAC-seq) is a recently developed technique used to map

44 approaches to decrease wasted sequencing in ATAC-seq libraries generated from lymphoblastoid cell li

45 Using ATAC-seq maps of human CD4(+) T cells from a proband obt

46 ultiplicity of sequence signals in DNase- or ATAC-seq maps.

47 could lead to cost reduction when performing ATAC-seq on large numbers of samples and in cell types t

48 a unique epigenomic landscape, we performed ATAC-seq on mouse rods and their most closely related ce

49 of these data with epigenome data, including ATAC-seq on skeletal muscle, and transcriptome data acro

50 Transposase Accessible Chromatin sequencing (ATAC-seq) produce genome-wide data that include distinct

51 TF sequence signals from ChIP-, DNase-, and ATAC-seq profiles.

52 Comparative ATAC-seq profiling of Arabidopsis root hair and non-hair

53 ained by preparing samples with the original ATAC-seq protocol (using detergent) and treating them wi

54 We present Omni-ATAC, an improved ATAC-seq protocol for chromatin accessibility profiling

55 chromatin accessibility data (DNase-seq and ATAC-seq) published before January 1, 2016, including 13

56 n and H3K79me2 profiling in conjunction with ATAC-seq, revealed a permissive genomic environment for

57 Depending on the cell type, ATAC-seq samples may contain 20-80% of mitochondrial se

58 Single-cell ATAC-seq (scATAC) yields sparse data that make conventio

59 Single-cell ATAC-seq (scATAC-seq) maps from hundreds of single cells

60 on, coincident with DNase hypersensitive and ATAC-seq sites at a low sequencing burden.

61 while flash-frozen iMNs are not suitable for ATAC-Seq, the assay is successful with slow-cooled cryop

62 In this study, we use ATAC-seq to identify chromatin accessibility changes in

63 Application of ATAC-seq to sorted nuclei identifies accessible regions

64 Assay for Transposase Accessible Sequencing (ATAC-seq) to biobanked specimens is described and was us

65 e Chromatin with high-throughput sequencing (ATAC-seq) to define chromatin accessibility in predicted

66 e chromatin with high-throughput sequencing (ATAC-seq) to genotype and profile active regulatory DNA

67 Accessible Chromatin followed by sequencing (ATAC-seq) to neuronal and non-neuronal nuclei isolated f

68 osase-accessible chromatin using sequencing (ATAC-seq)) to a state strongly resembling that of mouse

69 Transposase-accessible chromatin sequencing (ATAC-seq) was performed in MFD-1, OE33, and non-neoplast

70 e chromatin with high-throughput sequencing (ATAC-seq), we identified accessible chromatin within end

71 e assay of transposase accessible chromatin (ATAC-seq), we observe a highly structured pattern of DNA

72 e chromatin with high-throughput sequencing (ATAC-seq), we show that the histone deacetylase inhibito

73 Using a new approach of allelic ATAC-seq, we demonstrate that the Igkappa V alleles have

74 o and genome-wide chromatin accessibility by ATAC-seq, we found that the occupancy of target sequence

75 ezing neuronal cells that is compatible with ATAC-Seq; we focused on a disease-relevant cell type, na

76 Here, we describe an assay combining ATAC-seq with fluorescence-activated nuclei sorting (FAN