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1 f ATP as well as AMP-PCP (a non-hydrolyzable ATP analog).
2 tubule-attached, dimeric kinesin bound to an ATP analog.
3 analyzed to find an efficient unhydrolyzable ATP analog.
4 number in the presence of a nonhydrolyzable ATP analog.
5 benzoyladenosine, an irreversible inhibitory ATP analog.
6 trand with duplex DNA in the presence of the ATP analog.
7 lication of ATP but not by a nonhydrolyzable ATP analog.
8 nts containing AMPPNP, a slowly hydrolyzible ATP analog.
9 at the engineered v-Src uniquely accepted an ATP analog.
10 triphosphate, gamma-S-ATP, a nonhydrolyzable ATP analog.
11 ompassing all six subunits, upon binding the ATP analog.
12 receptor with AMPPNP, a hydrolysis-resistant ATP analog.
13 by another kinase that could not utilize the ATP analog.
14 and ssDNA in the presence and absence of an ATP analog.
15 as well as that bound to a non-hydrolyzable ATP analog.
16 ed by binding of a specific non-hydrolyzable ATP analog.
17 odulated by the polynucleotide substrate and ATP analog.
18 e obtained with either peptide inhibitors or ATP analogs.
19 ion showed intermediate sensitivity to these ATP analogs.
20 g studies using fluorescent and spin-labeled ATP analogs.
21 eriments and inhibition with nonhydrolyzable ATP analogs.
22 s in the presence of ATP and nonhydrolyzable ATP analogs.
23 th neutral-backbone DNA and non-hydrolyzable ATP analogs.
24 ressed in the form of reductions in kcat for ATP analogs.
25 combination of peptide and non-hydrolysable ATP analogs.
26 changes in ternary complexes with different ATP analogs.
27 of the Pat1 kinase (pat1-as2) by adding the ATP analog 1-NM-PP1 in G1-arrested cells allows the indu
28 e required to activate the receptor, and the ATP analog 2',3'-O-(4-benzoyl-benzoyl)ATP (BzATP) is bot
29 Finally, we demonstrate that the fluorescent ATP analog 2'/3'-O-(N'-methylanthraniloyl)-ATP (mantATP)
31 ers in rigor were labeled with a fluorescent ATP analog, 3'-DEAC-propylenediamine (pda)-ATP (3'-O-{N-
33 nosine triphosphate, and the nonhydrolyzable ATP analog 5'-adenylyl-beta,gamma-imidodiphosphate (AMP-
34 presence and absence of the nonhydrolyzable ATP analog 5'-adenylyl-beta,gamma-imidodiphosphate (AMPP
35 Moreover, Top2 bound to the nonhydrolyzable ATP analog 5'-adenylyl-beta,gamma-imidodiphosphate exhib
36 ctivity in the presence of the non-substrate ATP analog 5'-adenylyl-beta,gamma-imidodiphosphate verif
38 iminated by substituting the nonhydrolyzable ATP analog 5-adenylyl-imidodiphosphate or UTP for ATP in
39 hydrolyze ATP, or to bind a nonhydrolysable ATP analog, 5'-adenylyl-beta,gamma-imidodiphosphate (ADP
43 mass spectrometry using a novel fluorescent ATP analog, 8-azido-ATP-[gamma]-1-naphthalenesulfonic ac
45 in ternary complex with the nonhydrolyzable ATP analog adenosine 5'-(beta,gamma-imido)-triphosphate
46 oli PhoQ complexed with the non-hydrolyzable ATP analog adenosine 5'-(beta,gamma-imino)triphosphate a
48 ctivity is inhibited by the non-hydrolysable ATP analog (adenosine 5'-O-(thiotriphosphate)), T4 singl
51 structure, in complex with a nonhydrolyzable ATP analog, adenosine 5'-adenylyl-beta,gamma-imidodiphos
52 nding in the presence of the nonhydrolyzable ATP analog, adenosine 5'-O-(3-thio)triphosphate (ATPgamm
54 ants, L273A and L108A, and a nonhydrolyzable ATP analog, adenosine 5'-O-(3-thiotriphosphate) (ATPgamm
55 RepA in the presence of a poorly hydrolyzed ATP analog, adenosine 5'-O-(thiotriphosphate), and to re
57 nced upon the addition of a non-hydrolyzable ATP analog (adenylyl-imidophosphate), whereas ADP had no
60 Pase domain, bound with the non-hydrolyzable ATP analog ADP-beryllium fluoride, we studied the NtrC1-
62 ADP.Pi analogs ADP.AlF4 and ADP.Vi, and the ATP analogs ADP.BeFx, AMPPNP and ATPgammaNH2, all induce
66 hile in the presence of the non-hydrolyzable ATP analog, ADP-beryllium fluoride, we observe additiona
68 rate that the presence of a non-hydrolyzable ATP analog allows Mtr4p to discriminate between partial
69 mammalian cartilage and bone, the effects of ATP analogs, ALP substrates, and specific inhibitors on
70 trate (2S,5S)-5-carboxymethylproline (CMPr), ATP analog alpha,beta-methyleneadenosine 5'-triphosphate
72 ose homo-oligomers that are sensitive to the ATP analog alphabeta-methylene ATP(alphabetameATP) (P2X(
74 p did not catalyze the hydrolysis of ATP and ATP analogs, although fluorescence measurements indicate
75 e investigated whether interactions with the ATP analog AMP-PNP and ADP can shift the conformational
77 cellular perfusion with the non-hydrolyzable ATP analog AMP-PNP dramatically reduce the amplitude of
78 hondrial ATP, and cocrystallization with the ATP analog AMP-PNP suggests that binding of nucleotides
79 data establish that, in the presence of the ATP analog AMP-PNP, or ADP, a maximum of six DnaC monome
81 6p complexed with an RNA oligonucleotide and ATP analogs AMP-PNP, ADP-BeF(3)(-), or ADP-AlF(4)(-).
82 te (Vi), acetate, ATP, or a non-hydrolyzable ATP analog (AMP-PNP), with differential effects on matri
85 of the open state bound to a nonhydrolyzable ATP analog (AMPPCP) and 1,6-anhydroMurNAc provide detail
88 e in a quaternary complex with tRNA(Gln), an ATP analog and glutamate reveals that the non-cognate am
89 f activated NTPDase3 with a non-hydrolyzable ATP analog and the cofactor Mg(2+) to a resolution of 2.
90 ed here, of bovine F1-ATPase inhibited by an ATP analog and the phosphate analog, thiophosphate, repr
93 rystal structures of Mss116p in complex with ATP analogs and single-stranded RNA show that the helica
97 microM in the presence of a nonhydrolyzable ATP analog, and 45 microM in the presence of ADP or no n
98 -adenylylimidodiphosphate, a nonhydrolyzable ATP analog, and was blocked in the presence of H7 or the
99 plants display protein kinase activity, bind ATP analogs, and possess C-terminal domains similar to b
100 ment formed on DNA in the presence of ATP or ATP analogs, and this has been studied at low-resolution
103 e intrinsic affinities of all of the studied ATP analogs are lower than the intrinsic affinities of t
104 , the detection of which can be modulated by ATP analogs as well as DNA sequence flanking the TATA se
108 ional changes in the loop that surrounds the ATP analog (ATP-lid) and has implications for interactio
109 We demonstrate that the nonhydrolyzable ATP analog, ATP gamma S, supports the formation of an is
110 he E. coli clamp-loader complex bound to the ATP analog ATPgammaS (at a resolution of 3.5 A) and ADP
112 addition of an excess of the unhydrolyzable ATP analog ATPgammaS, supplementation with exogenous ATP
116 his complex reveal that the non-hydrolyzable ATP analog, ATPgammaS, induces a high-affinity binding m
117 nucleotide, or in the presence of ADP or the ATP analog, ATPgammaS, there was no helical ordering.
118 unctional cycle by use of a non-hydrolyzable ATP analog, ATPgammaS, to mimic the ATP-bound GroEL stat
120 IC50 of inhibitors using the nonhydrolyzable ATP analog, beta, gamma-methyleneadenosine 5'-triphospha
123 e have previously shown that nonhydrolyzable ATP analogs block the lytic activity of NK cells and CD8
124 that binds ADP in bovine F(1) ATPase has an ATP analog bound and therefore this structure does not r
125 .ATP, and we observe a single molecule of an ATP analog bound in the aforementioned surface cavity, n
127 plex, deiNOS quenches the fluorescence of an ATP analog bound to TrpRS II, and increases its affinity
128 ences compared to AMPPNP (a non-hydrolyzable ATP analog) bound to PhoQcat and radicicol bound to Hsp9
129 ene)triphosphate (AMP-PCP) (non-hydrolyzable ATP analog) bound were also solved at 1.9-A resolution.
131 nzyl)-ATP and N(6)(phenethyl)-ATP over other ATP analogs, but still retained a 30 microm K(m) for ATP
133 n allostery not catalysis, and the classical ATP-analog class of tyrosine kinase inhibitors fail to i
135 e of magnesium and ATP (or a nonhydrolyzable ATP analog), contains maximal DNA helicase in the presen
137 (fluorosulfonyl)benzoyl]adenosine (FSBA), an ATP analog, demonstrate that both inhibitors bind to the
141 wever, in the presence of a non-hydrolyzable ATP analog, DNA binding was only slightly compromised.
142 rom Dictyostelium in the presence of various ATP analogs do not show changes at the reactive thiol re
143 midodiphosphate (AMP-PNP), a nonhydrolyzable ATP analog, each kinesin-1 dimer binds two tubulin heter
145 pecific interactions with the adenine of the ATP analog, establishing the molecular basis of ATP reco
147 in, solved to 2.4 A both with and without an ATP analog, form isologous, but asymmetric homodimers.
149 olyzable (AMP-PNP, AMP-PCP) nor hydrolyzable ATP analogs (GTP, CTP, UTP, and ITP) activated hIK1.
151 e in complex with a peptide substrate and an ATP analog has been determined at 1.9 A resolution.
153 kinase domain and its binary complex with an ATP analog has revealed an identical open kinase conform
155 iphosphate (AMP-PNP), a hydrolysis-resistant ATP analog; however, this study mainly used AMP-PNP to f
158 ormation when complexed with nonhydrolysable ATP analogs, in contrast to other transporter structures
162 e specifically sensitive to a cell-permeable ATP analog inhibitor, allowing us to perform high-resolu
166 Specifically, ATPgammaS (a nonhydrolyzable ATP analog) inhibits secretion of interferon gamma by NK
167 dominantly the P2X7 receptor (P2X7R), via an ATP analog initiate innate proinflammatory inflammation,
170 tegy, a neo-substrate approach involving the ATP analog kinetin triphosphate (KTP), can be used to in
177 nase displayed catalytic efficiency with the ATP analog, N(6)-(cyclopentyl) ATP, which is similar to
182 the effects of ATP, ADP, and nonhydrolyzable ATP analogs on the lifetime of protein.DNA complexes.
184 ocked by the use of either a nonhydrolyzable ATP analog or a single-ring GroEL mutant, substrates com
185 ection from inhibition by a non-hydrolyzable ATP analog or acetylphosphate, in conjunction with the s
186 mplex with either APS and a non-hydrolyzable ATP analog or APS and sulfate revealed the overall struc
187 e enzyme is titrated with a non-hydrolyzable ATP analog or the enzyme is mutated such that it is able
188 n the presence of AMP-PNP (an unhydrolyzable ATP analog) or the autophosphorylation-site mutant, T267
189 ciated with ATPgammaS, a poorly hydrolyzable ATP analog, or ADP plus AlF(4), which mimics the transit
190 S, a nonphysiological and slowly hydrolyzed ATP analog, or by inactivating one of the two nucleotide
191 er with ATP-gamma-s, the slowly hydrolyzable ATP analog, or with ATP in the presence of alpha, beta-m
192 as observed with MgADP, with nonhydrolyzable ATP analogs, or with MgATP by catalytically inactive eny
193 diphosphate (AMPPNP), a hydrolysis-resistant ATP analog, prior to treatment with FSBMantAdo resulted
194 imidodiphosphate (AMPPNP), a nonhydrolyzable ATP analog, promotes stable complex formation between Re
195 bound to labeled RNA and a non-hydrolyzable ATP analog provide a direct view of how large domain mov
196 treatment with ATPgammaS, a nonhydrolyzable ATP analog, recapitulated early signaling events associa
197 tified using a combination of more selective ATP analogs, receptor expression studies, and study of d
199 ty (5-8-fold) and binding of the 14C-labeled ATP analog rho-fluorosulfonylbenzoyl 5'-adenosine (FSBA)
202 horylation in receptor activation, and 4) an ATP analog selectively inhibits the GC-B mutants, indica
204 To explore Ypk1/2 function, we constructed ATP analog-sensitive alleles of both kinases and monitor
206 nhibition of PKA catalytic subunits that are ATP analog-sensitive causes increased Bcy1 phosphorylati
211 3.8 A resolution) for this S1 complexed with ATP analogs, some of which are cross-linked by para-phen
213 normal function and disease, we developed an ATP analog-specific (AS) PKCdelta that is sensitive to s
214 -(benzyl) ATP to a cell lysate containing an ATP analog-specific kinase allele (as1 allele) results i
217 el is partly based on the reduced ability of ATP analogs such as adenosine 5'-(beta,gamma-imino)triph
219 Finally, experiments with non-hydrolyzable ATP analogs suggest that SpoIIIE can operate with non-co
220 netic and binding studies with a fluorescent ATP analog suggested that ATP induces a conformational c
221 inhibited by the addition of nonhydrolyzable ATP analogs, suggesting that ATP hydrolysis and not just
226 nalysis the protective effect of AMP-PCP, an ATP analog that is not utilized for enzyme phosphorylati
227 s to be uniquely sensitive to inhibitors and ATP analogs that are not recognized by wild-type kinases
229 ns (unlike with assays utilizing radioactive ATP analogs), the assay described can be used to disting
234 In the presence of ATP or a nonhydrolyzable ATP analog, the initial step is the self-assembly of Clp
237 crystal structures in complexes with RNA and ATP analogs, Thomsen and Berger now elucidate the molecu
239 but not the wild type (WT) kinase, used the ATP analog to phosphorylate both a model peptide substra
240 Second, the binding of a nonhydrolyzable ATP analog to the yeast enzyme appears to affect citraco
242 tic resonance spectroscopy with spin-labeled ATP analogs to probe the structure of the ATP active sit
243 e kinetics of binding mantATP (a fluorescent ATP analog) to the microtubule K341 complex, the dissoci
245 pool also can be filled with the fluorescent ATP analog trinitrophenol ATP, as well as with a photoac
246 The 6-histidine loop bound the fluorescent ATP analog trinitrophenyl-ATP with high affinity, as det
247 bstrate, as well as spectroscopically active ATP analogs (trinitrophenyl-ATP and ATP gamma S-acetamid
248 circle in the presence of a nonhydrolyzable ATP analog under the same conditions that the wild type
250 engineered to accept bulky N(6)-substituted ATP analogs, using a chemical genetics approach initiall
257 l-regulated kinase 2 (ERK2) that can utilize ATP analogs, we have identified the alternative mRNA spl
259 tructures of yeast dynein bound to different ATP analogs, which collectively provide insight into the
260 g by BLM in the presence of non-hydrolysable ATP analogs, which has implications for the underlying m
261 ased on their ability to bind a spin-labeled ATP analog with stoichiometries and equilibrium binding
262 erently in the presence of a nonhydrolyzable ATP analog, with subconductance openings significantly s
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