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1 Ala and Glu mutations of the FG loop KHR residues showed
2 Ala variants of His(1092) and His(1098) also elicit larg
3 Ala-DAG formation in Corynebacterium glutamicum is depen
4 lytic MIO prosthetic group created from (189)Ala-Ser-Gly(191) residues and the bound l-phenylalanine
6 through Ser(389) phosphorylation in Ser(389)Ala knockin mice causes a decrease in the fitness of cel
7 sition 241 in both CELA3A ( approximately 4% Ala(241) alleles) and CELA3B ( approximately 2% Gly(241)
8 es which possess two extra residues (Ile 41 &Ala 42) that the non-pathological strain (Abeta40) lacks
9 gion of APOB bound RAD21 but not RAD21 p.622 Ala>Thr; expression of wild-type RAD21 in HEK293 cells r
11 Asn-1029 from domain A, as well as Leu-938, Ala-978, and Leu-981 from domain B) near subsite +1 that
13 ectification depends on a single amino acid (Ala(254)) at the inner pore mouth of the channels and is
14 -mer peptide variants containing amino acids Ala, Asn, Gln, His, Ile, and Lys at positions equivalent
15 ion of glycine with eight other amino acids (Ala, Asp, Glu, His, Lys, Pro, Thr and Val), incorporatin
16 f the affinity and selectivity by additional Ala to Xaa substitutions; 6) protection of the charged f
17 nd alanine [Ala]) and combined AAs (Tyr-Ala, Ala-Tyr, Tyr-Tyr-Tyr, Ala-Ala-Ala), and found that HAcAm
18 AAs (Tyr-Ala, Ala-Tyr, Tyr-Tyr-Tyr, Ala-Ala-Ala), and found that HAcAm formation from the chlorinati
21 the beta-9 sheet of FGF14 where an alanine (Ala) mutation of Val-160 impaired binding to Nav1.6 but
23 s from free AAs (tyrosine [Tyr] and alanine [Ala]) and combined AAs (Tyr-Ala, Ala-Tyr, Tyr-Tyr-Tyr, A
24 lopathy susceptibility 2 gene linked to AMD, Ala(69)-->Ser, did not improve the statistical model.
27 e severe effects than replacing Cys276 by an Ala residue in the active site of the enzyme, as encount
28 the complete protein sequence and located an Ala/Thr difference between the two species that explaine
29 otrophicus (Gd), which natively possesses an Ala residue in the position of the Ser ligand to the P-c
31 major HLA-B*51 subpeptidomes with Pro-2 and Ala-2, the former one was significantly reduced, and the
32 7 impact sodium binding, whereas Arg-257 and Ala-260 may participate in interactions leading to closu
35 e composed of Leu-Val, Leu-Tyr, Gly-Tyr, and Ala-Tyr dissolved in DMSO-d6/GL (8:2, v/v) and of an apo
36 One among the synthesized analogue, Ac-Arg-Ala-[d-Cys-Arg-Phe-His-Pen]-COOH (19), displayed subnano
38 h five arginyl dipeptides: Ala-Arg (AR), Arg-Ala (RA), Arg-Pro (RP), Arg-Glu (RE), and Glu-Arg (ER);
40 macrocyclic scaffold (c[Pro-Arg-Phe-Phe-Asn-Ala-Phe-DPro]) were explored with 14-compound and 8-comp
41 most potent scaffold, c[Pro-Arg-Phe-Phe-Asn-Ala-Phe-DPro], comprised the hexa-peptide beta-hairpin l
42 ncy at the mMC4R, c[Pro-His-DPhe-Arg-Trp-Asn-Ala-Phe-DPro] and c[Pro-His-DPhe-Arg-Trp-Dap-Ala-DPro],
44 we found that this non-canonical cleavage at Ala-470-Asn-471 is instrumental for the onset of catalys
45 amino acids, amino tetrazolyl alanines ((ATz)Ala = Ata), in a very good yield was subsequently achiev
46 stration of hybrid 13a (H-Dmt-d-Arg-Aba-beta-Ala-Arg-Tyr-Tyr-Arg-Ile-Lys-NH2) to mice resulted in pot
47 he opioid pharmacophore H-Dmt-d-Arg-Aba-beta-Ala-NH2 (7) was linked to peptide ligands for the nocice
51 lipid phosphatidylglycerol (PG) catalyzed by Ala-tRNA(Ala)-dependent alanyl-phosphatidylglycerol synt
54 ion channels, GLIC and ELIC, was examined by Ala scanning mutagenesis, deletion mutations, and mutant
55 f approximately 300 site-directed mutants by Ala/Leu scanning mutagenesis, the expression of each mut
56 tive Gs but not Gq signaling was observed by Ala substitution of four out of the six core polar resid
61 ption, with an appended C-terminal domain (C-Ala) that is conserved from prokaryotes to humans but wi
62 hat the large sequence divergence of human C-Ala reshaped C-Ala in a way that changed the global arch
63 Crystal structures of two forms of human C-Ala, and small-angle X-ray scattering of AlaRS, showed t
66 equence divergence of human C-Ala reshaped C-Ala in a way that changed the global architecture of Ala
70 the reaction mechanism of AMSDH, we created Ala, Ser, Asp, and Gln mutants and studied them using bi
72 d-Ala-d-Ala catalyzes the aggregation of a d-Ala-d-Ala-containing small peptide derivative in water.
73 hat beta-lactam antibiotics mimic the acyl-D-Ala-D-Ala moiety of the stem and, thus, are recognized b
74 teins, PBPs) have evolved to bind the acyl-D-Ala-D-Ala segment of the stem peptide of the nascent pep
75 jection of the mu-opioid receptor agonist [D-Ala(2), NMe-Phe(4), Gly-ol(5)]-enkephalin produces parad
76 -muramyl-l-Ala-gam ma-d-Glu-meso-DAP-d-Ala-d-Ala and 1,6-anhydro-N-acetyl-beta-d-muramyl-l-Ala-gamma-
77 d-muramyl-l-Ala-gamma-d-Glu-meso-DAP-d-Ala-d-Ala and binds to two activator muropeptides, N-acetyl-be
78 r interaction between vancomycin and d-Ala-d-Ala catalyzes the aggregation of a d-Ala-d-Ala-containin
79 ta-lactam antibiotics mimic the acyl-D-Ala-D-Ala moiety of the stem and, thus, are recognized by the
80 tapeptide revealed that the terminal D-Ala-D-Ala motif of the repressor forms the primary contacts wi
82 PBPs) have evolved to bind the acyl-D-Ala-D-Ala segment of the stem peptide of the nascent peptidogl
85 d-muramyl-l-Ala-gamma-d-Glu-meso-DAP-d-Ala-d-Ala, as assessed by non-denaturing mass spectrometry.
88 difications designed to provide dual d-Ala-d-Ala/d-Ala-d-Lac binding that directly overcome the molec
92 tions designed to provide dual d-Ala-d-Ala/d-Ala-d-Lac binding that directly overcome the molecular b
96 eceptor interaction between vancomycin and d-Ala-d-Ala catalyzes the aggregation of a d-Ala-d-Ala-con
97 ylated analogues of the stem peptide cyclo(d-Ala-Ala5 ); 2) selection of cyclic peptides with the hig
98 beta-d-muramyl-l-Ala-gam ma-d-Glu-meso-DAP-d-Ala-d-Ala and 1,6-anhydro-N-acetyl-beta-d-muramyl-l-Ala-
99 -beta-d-muramyl-l-Ala-gamma-d-Glu-meso-DAP-d-Ala-d-Ala and binds to two activator muropeptides, N-ace
100 -beta-d-muramyl-l-Ala-gamma-d-Glu-meso-DAP-d-Ala-d-Ala, as assessed by non-denaturing mass spectromet
101 F) at the fourth position (ligand 5: H-Dmt-d-Ala-Gly-Phe(4-F)-Pro-Leu-Trp-NH-Bn(3',5'-(CF3)2)) exhibi
102 ket modifications designed to provide dual d-Ala-d-Ala/d-Ala-d-Lac binding that directly overcome the
107 on PG units that have stems terminating in d-Ala-d-Lac, serving as markers to prevent both the PG-ste
109 ne biosynthesis, reduction of ester-linked D-Ala in teichoic acids, and reduction of peptidoglycan cr
110 d MX-2401, maintained the incorporation of D-Ala during peptidoglycan biosynthesis while the incorpor
115 Attempts to alter the mu-selectivity of [D-Ala(2),N-MePhe(4),Gly-ol(5)]enkephalin (DAMGO)-related g
117 Ac-pentapeptide revealed that the terminal D-Ala-D-Ala motif of the repressor forms the primary conta
122 We critically examine the effect of Gly-to-d-Ala substitutions on protein stability using experimenta
124 rat plasma with ligands 3, 5, and 7 (H-Tyr-d-Ala-Gly-Phe(4-F)-Pro-Leu-Trp-NH-Bn(3',5'-(CF3)2)) showed
125 la-Leu-Arg-Pro-NHEt (LHRHa) to Trp-Ser-Tyr-D-Ala-Leu-Arg-Pro-NHEt (fragment 1) and Ser-Tyr-D-Ala-Leu-
127 nto two fragments from Glp-His-Trp-Ser-Tyr-D-Ala-Leu-Arg-Pro-NHEt (LHRHa) to Trp-Ser-Tyr-D-Ala-Leu-Ar
128 ysis of a model strain predominantly using D-Ala-D-Lac precursors for peptidoglycan biosynthesis duri
132 Ala-Phe-DPro] and c[Pro-His-DPhe-Arg-Trp-Dap-Ala-DPro], and may be further developed to generate nove
134 ae (HBO) cells with five arginyl dipeptides: Ala-Arg (AR), Arg-Ala (RA), Arg-Pro (RP), Arg-Glu (RE),
135 C-A-8E progressively increased the Km Double Ala substitutions for Ser-497 and either Thr-500, Ser-51
136 hains of different polarity and length (i.e. Ala, Arg, Cys, His, Glu, and Leu) on transporter stabili
137 tified a homozygous mutation (p.622, encodes Ala>Thr) in RAD21 in patients from a consanguineous fami
138 analysis of a set of 25 analogues featuring Ala(1) or His(1) and a variety of aromatic side chains a
140 es, while beta-ketosulfonamides derived from Ala, Phe, or hPhe gave the hydrates of the imino beta-ke
145 Here, we have identified the DEAD (Asp-Glu-Ala-Asp) box RNA helicase 24 (DDX24) as a novel regulato
146 of the 20 common amino acids, including Gly, Ala, Ser, Thr, Asp, and Glu, which are relatively silent
148 ds from PAGE gels reveal an abundance of Gly/Ala/Ser/Thr repeats exemplified by a prominent, previous
149 al analysis demonstrated that the Glu(3) --> Ala substitution resulted in a molecular switch that was
151 show that ClpP1P2 prefers Met >> Leu > Phe > Ala in the X1 position, basic residues or Trp in the X2
152 in the RlmN reaction, in which a Cys(118)-->Ala variant of the protein is cross-linked to a tRNA(Glu
156 oenzyme, PORA, as encountered with (Cys303-->Ala)-PORB plants, caused more severe effects than replac
158 lass I viral fusion proteins, including high Ala/Gly content, intermediate hydrophobicity, and few ch
159 o examined the behavior of PAbetaN homologs, Ala beta-naphthylamide, Arg beta-naphthylamide, and Phe
162 haeroides and a mutant that mimics the human Ala(147)-->Thr(147) polymorphism associated with psychia
163 and a tachykinin-related peptide (CabTRP Ia, Ala(1)-Pro(2)-Ser(3)-Gly(4)-Phe(5)-Leu(6)-Gly(7)-Met(8)-
164 s at gp120 positions 23, 45, 47, and 70 (Ile-Ala-Lys-Asn [I-A-K-N]) emerged as signatures of mucosal
165 of a large number of amino acids, including Ala and gamma-amino butyric acid, indicating a role of o
166 e domains; and (iii) a single, inconspicuous Ala-to-Ser substitution in the catalytic site was key to
170 t peptide sequence (i.e., PhCO-(R)-Oxo-Azn-L-Ala-Aib-L-AlaNHMe) and a stable 310-helix conformation w
171 abiotic samples (seven enantiomer pairs d/l-Ala, -Asp, -Glu, -His, -Leu, -Ser, -Val and the three ac
173 1-->4)-1,6-anhydro-N-acetyl-beta-d-muramyl-l-Ala-gam ma-d-Glu-meso-DAP-d-Ala-d-Ala and 1,6-anhydro-N-
174 pressor ligand UDP-N-acetyl-beta-d-muramyl-l-Ala-gamma-d-Glu-meso-DAP-d-Ala-d-Ala and binds to two ac
175 la and 1,6-anhydro-N-acetyl-beta-d-muramyl-l-Ala-gamma-d-Glu-meso-DAP-d-Ala-d-Ala, as assessed by non
179 of the native L3P as D-Phe-N-Methyl-L-Val-L-Ala-OMe attached in N-ter to a 20-carbon fatty acid chai
180 ecular recognition of the tripeptide Tyr-Leu-Ala by the synthetic receptor cucurbit[8]uril (Q8) in aq
181 the straightforward incorporation of Tyr-Leu-Ala into recombinant proteins should make this system at
184 well as in knock-in mice expressing a mutant Ala(286)-CaMKIIalpha that cannot autophosphorylate to be
185 ntaining azide and alkyne at its termini (N3-Ala-Val-NHCH2C identical withCH, 1) was synthesized.
186 ted with azide and alkyne at its termini, N3-Ala-Val-NHCH2-C identical withCH, which is designed to s
187 ural amino acid, isothiocyanyl alanine ((NCS)Ala = Ita), for the synthesis of another class of unnatu
188 tapeptide Boc-(R)-Aic(NN)-(Ala)2-(R)-Aic(NN)-Ala-OMe and the hexapeptide Boc-[Ala-(R)-Aic(NN)-Ala]2-O
190 and i+3 of the pentapeptide Boc-(R)-Aic(NN)-(Ala)2-(R)-Aic(NN)-Ala-OMe and the hexapeptide Boc-[Ala-(
191 tion of Xrn2-Thr439 to a nonphosphorylatable Ala residue caused phenotypes consistent with inefficien
195 ty of an aaPGS homolog, whereas formation of Ala-PG requires the same enzyme acting in concert with a
202 oriented lipid bilayers by using (2)H-NMR on Ala-d3-labeled peptides, which yielded orientation-depen
203 ivative along with an l-peptide in which one Ala has been replaced by a beta-amino acid residue.
204 ith nonphosphorylatable residues like Phe or Ala significantly affected autophosphorylation on select
205 hen supplemented with o-Tyr, cognate Phe, or Ala, the latter of which is not a substrate for activati
206 s residue, which is a Tyr in LodA, to Tyr or Ala eliminates the cooperativity and destabilizes the di
208 e of a cardiac event compared with Pro/Pro + Ala/Pro genotypes in multivariate analysis (odds ratio,
209 200-residue polypeptide tag comprising Pro, Ala, and Ser (PAS200) and by fusion with an albumin-bind
210 ides were identified as Val-Glu-Leu-Tyr-Pro, Ala-Phe-Val-Gly-Tyr-Val-Leu-Pro and Glu-Lys-Ser-Tyr-Glu-
217 TMSs) and cytoplasmic domains, with residues Ala(463) and Cys(466) buried within the trimer interface
219 age- and sex-matched control subject (seven Ala/Ala and two Ala/Thr, five males and four females in
220 hate measurements confirmed that single-site Ala substitutions reduced receptor phosphate levels more
226 y of channel activity, and here we show that Ala or Cys substitutions of the functionally equivalent
227 aim was to study the association between the Ala allele and changes in TL in high cardiovascular risk
228 ning was detected to a greater extent in the Ala carriers compared with the Pro/Pro subjects (P for i
229 milarly, vascular endothelial cells with the Ala/Ala genotype had higher intracellular cadmium concen
232 osphorylation sites at Thr-70 and Ser-166 to Ala resulted in a loss of KIN10-dependent phosphorylatio
233 1 to Asp in the double E loop and Gln-329 to Ala in the canonical THW loop enables the enzyme to prod
237 Dual substitution of Asp-219 and Glu-447 to Ala sustained pH-independent activity over a broad range
238 lso show that mutating Thr(60) or Ser(64) to Ala increases the half-life of UNG2, reduces the rate of
240 phosphorylation site by mutating Thr(89) to Ala impaired localization of LPL to the actin-rich lamel
241 abilizing mutant (FnIII9'10), (ii) an Arg to Ala synergy site mutation (FnIII9(R)-->(A)10), (iii) a t
242 d NBP35 protein in combination with Cys14 to Ala substitution had distorted leaf development and decr
246 e shown that due to the site-specific Lys to Ala mutations of PIP5K at Lys-244 and Lys-490, it is una
249 r multiple residues of hERG1 were mutated to Ala or Cys and the resulting mutant channels were hetero
250 45A mutant (in which Ser(845) was mutated to Ala) mice were tested in a water maze after chronic nalt
251 c mice in which Ser367 of PS1 was mutated to Ala, show dramatic increases in Abeta peptide and in bet
252 pk1(11A)), in which 11 sites were mutated to Ala, was hyperactive, causing increased inward transport
255 e to ASP loop residues, an additional Phe to Ala substitution was synthesized and observed to maintai
256 Mutation of the palmitoylated Cys residue to Ala or inhibition of protein palmitoylation decreased HC
258 t, expression of occludin mutated at S490 to Ala, completely inhibited angiogenesis in cell culture m
260 lation sites to non-phosphorylatable (Ser to Ala, SA) or phosphomimetic residues (Ser to Glu, SE) red
265 by hPDI therefore, step-wise peptide Phe-to-Ala changes were progressively introduced and shown to r
266 f Ser-314 phosphorylation either with Ser-to-Ala substitution or with a specific inhibitor of CDK4/6
269 cer was specifically tested by p27 Thr187-to-Ala knockin (p27T187A KI), it was found dispensable for
270 sphatidylglycerol (PG) catalyzed by Ala-tRNA(Ala)-dependent alanyl-phosphatidylglycerol synthase (A-P
271 over, DTD's activity on non-cognate Gly-tRNA(Ala) is conserved across all bacteria and eukaryotes, su
272 ure can efficiently edit mischarged Gly-tRNA(Ala) species four orders of magnitude more efficiently t
274 nomethylaniline-diglycolic acid-DPhe-Gln-Trp-Ala-Val-Gly-His-Leu-NHEt), showing excellent tumor local
275 ino-1-carboxymethyl-piperidine-D-Phe-Gln-Trp-Ala-Val-Gly-His-Sta-Leu-NH2 ((68)Ga-RM2) is a synthetic
276 ino-1-carboxymethyl-piperidine-d-Phe-Gln-Trp-Ala-Val-Gly-His-Sta-Leu-NH2 ((68)Ga-RM2) is a synthetic
278 tched control subject (seven Ala/Ala and two Ala/Thr, five males and four females in each group; medi
279 combined AAs (Tyr-Ala, Ala-Tyr, Tyr-Tyr-Tyr, Ala-Ala-Ala), and found that HAcAm formation from the ch
280 yr] and alanine [Ala]) and combined AAs (Tyr-Ala, Ala-Tyr, Tyr-Tyr-Tyr, Ala-Ala-Ala), and found that
281 -Cl-Phe-Gly, N-Cl-Tyr-Ala, and N,N-di-Cl-Tyr-Ala along with their corresponding dipeptides were detec
282 -Cl-Phe-Gly, N-Cl-Tyr-Ala, and N,N-di-Cl-Tyr-Ala were identified as the major products based on accur
283 y, N,N-di-Cl-Tyr-Gly, N-Cl-Phe-Gly, N-Cl-Tyr-Ala, and N,N-di-Cl-Tyr-Ala along with their correspondin
284 y, N-Cl-Phe-Gly, N,N-di-Cl-Phe-Gly, N-Cl-Tyr-Ala, and N,N-di-Cl-Tyr-Ala were identified as the major
285 n surrounding the C-terminal Glu-Pro-Ile-Tyr-Ala (EPIYA) motifs as well as the number of EPIYA motifs
288 yrosylglycine (Tyr-Gly), tyrosylalanine (Tyr-Ala), and phenylalanylglycine (Phe-Gly), reacted with so
289 es agonist to the same extent as ZnTerp upon Ala mutation of Ile-116(III:16/3.40), a residue that con
290 estigated three mutant forms (I14X; X = Val, Ala, Gly) of the enzyme that have increased active site
291 ould produce the tripeptide Phe-N-Methyl-Val-Ala with a lipid moiety, termed lipotripeptide (L3P).
292 ubstitutions had no effect or increased Vmax Ala but not Glu substitution for Ser-497 increased the M
293 ly, substitution of Thr-553 and Ser-555 with Ala promoted PIPKIgamma90 ubiquitination but enhanced th
294 dues for this, a mutant peptide KYE28A, with Ala substitutions at Phe(11), Phe(19), Phe(23), and Tyr(
295 plants expressing PORB mutant proteins with Ala substitutions of Cys276 or Cys303 are hypersensitive
297 nverted Cys-Pro motif had been replaced with Ala residues fails to bind hemin with high affinity.
298 n of four aromatic/hydrophobic residues with Ala dramatically impairs both IAPP self-assembly and het
299 e differential susceptibility of X-Pro and X-Ala bonds to ERAP1 trimming and together resulted in a s
300 active loop derivative c[Pro-Arg-Phe-Phe-Xxx-Ala-Phe-DPro], where Xxx was the native Asn of AGRP or a
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