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1 methylation of the truncated DLGAP4 promoter CpG island.
2 ges in a DNA molecule with the sequence of a CpG island.
3 equent acquisition of new DNA methylation in CpG islands.
4 rase II-enriched regions, and hypomethylated CpG islands.
5 iate the demethylation of DNA within genomic CpG islands.
6 pG rich while H3K27me3-only promoters lacked CpG islands.
7 rt of a mechanism that blocks methylation of CpG islands.
8 ications for polycomb-mediated repression at CpG islands.
9 nd generates paradoxical hypermethylation of CpG islands.
10 e and thus the transcriptional competence of CpG islands.
11 methylation occurring preferentially outside CpG islands.
12 lated changes in DNA methylation at specific CpG islands.
13 moters, regardless of their association with CpG islands.
14 me methylation occurred in sequences outside CpG islands.
15 igenetic regulatory elements than studies of CpG islands.
16 network show concomitant hypermethylation of CpG islands.
17 frequently in the shores than in the actual CpG islands.
18 otif significantly enriched in the effective CpG islands.
19 ver gene regions and location in relation to CpG islands.
20 aling pathway and lateralized methylation of CpG islands.
21 of the well-understood methylation-switch at CpG islands.
22 role for TDG in shaping 5fC distribution at CpG islands.
23 h the exception of genes that do not contain CpG islands.
25 we demonstrated that hypermethylation of the CpG-island 5'of the G(4)C(2)-repeat is expansion-specifi
26 was associated with hypermethylation of the CpG-island (5'of the repeat) in DNA samples obtained fro
27 over-represented in CpG islands, comparative CpG island analysis using conventional sequence analysis
28 ncing revealed that miR-210 is embedded in a CpG island and miR-210 gene has 2 CpG sites with lower m
30 induced obese (DIO) mice, methylation of the CpG island and the binding of methyl-CpG-binding domain
31 ead differences in methylation levels across CpG islands and a large number of differentially methyla
32 of myeloma occurred predominantly outside of CpG islands and affected distinct sets of gene pathways,
33 d by overwhelming age-related methylation in CpG islands and demethylation at shore/shelf and open se
36 he MBD4MBD4 targets the intact protein to (m)CpG islands and promotes scanning by rapidly exchanging
37 ation and a CxxC zinc-finger that recognizes CpG islands and recruits the polycomb repressive complex
42 h recombination hot spots, are enriched near CpG islands and transcription start sites (P<2.2 x 10(-1
43 to normal plasma cells, were located outside CpG islands and were unexpectedly associated with intron
44 d in hypomethylation of positions outside of CpG islands and within intragenic (exon) regions of the
46 ers 96% of known cytosine-phosphate-guanine (CpG) islands and 485,000 CpG, and transcriptome profilin
47 depending on the methylation status of this CpG island, and physically interacts with and up-regulat
48 d at transcription start sites (TSSs) and in CpG islands, and depleted in transcriptional enhancers.
49 proteins are crucial for PRC2 recruitment to CpG islands, and further clarifies the roles of these pr
50 ctivity, induces complete methylation of P16 CpG islands, and inactivates P16 transcription in the HE
51 tory regions, methylation levels in promoter CpG islands are actually higher for genes within placent
54 hes revealed that the majority of methylated CpG islands are intragenic and gene bodies are hypermeth
57 rential methylation patterns in the promoter CpG islands as well as in various less studied genomic r
64 cRNA genes, also a differentially methylated CpG island, binds GLI2 depending on the methylation stat
65 ed to individual regulatory elements such as CpG islands, but can extend across entire chromosomal do
66 edominately enriched in promoter regions, or CpG islands, but rather in the 3' UTR, gene bodies, CpG
68 stigated the methylation profile of the same CpG-island by bisulfite sequencing of DNA obtained from
69 nes lack a conventional TATA box but contain CpG islands, cCpG-I and cCpG-II for Cosmc and tCpG for T
70 w that the degrees of overall methylation in CpG island (CGI) and demethylation in intergenic regions
71 ometabolite d-2-hydroxyglutarate (2HG) and a CpG island (CGI) hypermethylation phenotype (G-CIMP).
72 nscription is initiated by a distal upstream CpG island (CGI) located several kilobases away that fun
73 ere we report a novel method for genome-wide CpG island (CGI) methylation sequencing for single cells
74 alysis revealed hypermethylation at a distal CpG island (CGI) near the HLA-E gene in NIKS-16 cells co
76 t GC skew is prevalent at thousands of human CpG island (CGI) promoters and transcription termination
77 revealed that de novo DNA methylation of non-CpG island (CGI) promoters was more often associated wit
78 shed this phasing primarily at enhancers and CpG island (CGI) promoters, with little effect on insula
79 ically distinct subsets, which correspond to CpG island (CGI) proximal or distal regions, respectivel
80 found that 5hmC is significantly enriched in CpG island (CGI) shores while depleted in CGIs themselve
81 that this exon is imbedded in a well-defined CpG island (CGI) that is highly methylated in the human
83 e analyzed 85,134 CpG sites [28,114 sites in CpG islands (CGI) and 57,020 in non-CpG islands (NCGI)].
86 but not directly shown, to protect promoter CpG islands (CGIs) against abnormal DNA methylation (DNA
87 ay occur in vivo for DNA methylation outside CpG islands (CGIs) and could facilitate localization of
92 at postnatal DNA methylation increases at 3' CpG islands (CGIs) correlate with transcriptional activa
93 DNA hypermethylation of promoter-associated CpG islands (CGIs) in cancer, hypermethylated sites in M
94 ell as increased methylation in the promoter CpG islands (CGIs) of a number of cell cycle related gen
96 , a DNA-binding module that often recognizes CpG islands (CGIs) where TET1 predominantly occupies.
97 stance, co-localization with coding regions, CpG islands (CGIs), and regulatory elements from the ENC
98 ion in the germline, especially at imprinted CpG islands (CGIs), is crucial to embryogenesis in mamma
100 d with regions of non-methylated DNA, called CpG islands (CGIs), which counteract the repressive effe
102 to CpG sites outside of genes, promoters and CpG islands (CGIs), while trans-meQTLs are over-represen
106 ared DNA methylation levels within promoter 'CpG islands' (CGIs) with 'CGI shores', recently describe
108 as CpG dinucleotides are over-represented in CpG islands, comparative CpG island analysis using conve
109 nct associations between DHSs and promoters, CpG islands, conserved elements, and transcription facto
110 protein, promotes H2Bub1 at the promoters of CpG island-containing genes by interacting with Rnf20.
111 in vertebrate cells, preferentially binds to CpG island-containing promoters and affects the organiza
112 equired for efficient recruitment of PRC2 to CpG island-containing promoters in mouse embryonic stem
113 eils the preferential occupancy of Fbxl19 on CpG island-containing promoters, and we further discover
120 a, we have determined genome-wide methylated CpG island distributions by next-generation sequencing.
123 terestingly, the human EpCAM gene also has a CpG island downstream from its TSS, and a NF-kappaB-bind
125 demonstrated that a 1.5 kb methylation-free CpG island from the human HNRPA2B1-CBX3 housekeeping gen
126 ions and methylation at loci concentrated in CpG islands genome wide in 95 nuclear pedigrees, using D
129 pigenetic repression occurs concomitant with CpG island hypermethylation and loss of nucleosomes at p
130 t EBV infection of oral keratinocytes led to CpG island hypermethylation as an epigenetic scar of pri
131 -based approach to monitor global changes in CpG island hypermethylation between HPV-negative and HPV
132 wide patterns of aberrant hypomethylation or CpG island hypermethylation in specific cancer types.
133 Ls with DNMT3A(R882), while DNMT3A-dependent CpG island hypermethylation is a consequence of AML prog
134 to EBV compared to uninfected controls, with CpG island hypermethylation observed at several cellular
138 lly all AMLs with wild-type DNMT3A displayed CpG island hypermethylation, this change was not associa
139 Here we demonstrate the presence of promoter CpG island hypermethylation-linked inactivation of DERL3
144 ing the changes in methylation patterns in a CpG island in the first exon of the promoter during lung
146 lung tumour-derived methylation data from a CpG island in the O6-methylguanine-DNA methyltransferase
150 ion status at 12 CpGs near the 5' end of the CpG island in two lung tumour samples for both alleles o
153 defined as DNA hypermethylation at specific CpG islands in subsets of tumors, show high concordance
157 ultiple SPRY3 transcripts originating at two CpG islands in the X-linked F8A3-TMLHE region, suggestin
158 ding pTreg displayed hypermethylation of the CpG islands in Treg-specific demethylated region, CTLA-4
159 Methylation-induced silencing of promoter CpG islands in tumor suppressor genes plays an important
160 high-level methylation in discrete promoter CpG islands, in a pattern clearly distinct from other lu
161 2235312 polymorphisms and methylation of the CpG island influence the expression of apelin in HAPE.
166 f the variant PCGF1/PRC1 complex by KDM2B to CpG islands is required for normal polycomb domain forma
167 sults demonstrate that Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiq
171 es such as MMP13 and IL1B, which have sparse CpG islands, is poorly understood in the context of musc
172 of c9ALS cases show hypermethylation of the CpG island located at the 5' end of the repeat expansion
173 ing cells, and examined DNA methylation of a CpG island located downstream from SALL4 transcriptional
174 pigenetic changes such as DNA methylation of CpG islands located in the promoter region of some tumor
175 omethylation in PMF was seen to occur in non-CpG island loci, showing further qualitative differences
177 we provide evidence that methylation beyond CpG islands may be related to regulation of gene express
178 f age-related changes in promoter-associated CpG islands may contribute to the increased cancer risk
179 ells due to DNA hypermethylation of promoter CpG islands may offer new cancer prevention or therapeut
180 s of CpG island methylation, suggesting that CpG island methylation alone might not be sufficient to
181 onally, we found that Smchd1 is required for CpG island methylation and silencing at a cluster of fou
182 published data from a study of differential CpG island methylation in lung cancer and a dataset we g
183 known to exhibit widespread promoter region CpG island methylation leading to the inactivation of ke
184 ssays of melanoma patient tissue samples for CpG island methylation near the noncoding RNA gene SNORD
185 ed with the TCGA 'microsatellite instability/CpG island methylation phenotype' transcriptomic subtype
186 utations, microsatellite instability status, CpG island methylation status, PTEN loss, EGFR expressio
187 or microsatellite instability, MLH1 promoter CpG island methylation, and KRAS and BRAF mutations in c
188 on differentiation, DNMT activation leads to CpG island methylation, causing loss of repressor protei
189 expression did not correlate with levels of CpG island methylation, suggesting that CpG island methy
191 epigenetic clusters, including a clear cell CpG island methylator phenotype (C-CIMP) subgroup associ
192 mismatch repair) system, the presence of the CpG island methylator phenotype (CIMP or CIMP-High) and
193 ocitrate dehydrogenase 1/2 (IDH1/2) have the CpG island methylator phenotype (CIMP) and significantly
194 ntaining activated BRAF (BRAF[V600E]) have a CpG island methylator phenotype (CIMP) characterized by
195 AS-positive colorectal cancers (CRCs) have a CpG island methylator phenotype (CIMP) characterized by
197 dification recapitulated the hypermethylated CpG island methylator phenotype (CIMP) observed in EBV-a
201 nations of microsatellite instability (MSI), CpG island methylator phenotype (CIMP), and mutations in
202 hibit BRAF mutation, MLH1 methylation, and a CpG island methylator phenotype (CIMP), but precursors a
203 olorectal cancer risk according to status of CpG island methylator phenotype (CIMP), microsatellite i
206 er differences, in a small set of non-glioma CpG island methylator phenotype (non-G-CIMP) primary tum
207 gnificantly enriched for those harboring the CpG island methylator phenotype (p = 0.036, Chi square t
208 pe 1 (microsatellite instability [MSI]-high, CpG island methylator phenotype [CIMP] -positive, positi
209 suppressor genes, such as APC and TP53; (3) CpG island methylator phenotype CRCs in approximately 20
210 y unmethylated CpGs, a characteristic of the CpG island methylator phenotype in cancer, a novel filte
211 tion status, microsatellite instability, and CpG island methylator phenotype were also evaluated.
212 ldtype] or BRAF [BRAF wildtype], no or a low CpG island methylator phenotype, and microsatellite stab
213 AS wildtype, BRAF wildtype, have no or a low CpG island methylator phenotype, and microsatellite stab
214 stics (including microsatellite instability, CpG island methylator phenotype, KRAS, BRAF, and PIK3CA
215 correlated tumor molecular characteristics (CpG island methylator phenotype, microsatellite instabil
221 c pancreatitis (CP) and normal tissues using CpG island microarrays and identified WNK2 as a prominen
226 ns as compared to introns while unmethylated CpG islands near transcription start sites became enrich
228 Aberrant DNA methylation in the promoter CpG island of Wnt inhibitory factor 1 (WIF1) has been ob
229 Bisulfite sequencing revealed that promoter CpG islands of ABCC3 and SLCO2A1 were not hypermethylate
231 0(-15); effect size = 14-17%), an intergenic CpG island on 2q37.1 (cg21566642, P = 3.73 x 10(-13); ef
232 hile early studies were mostly restricted to CpG islands or promoter regions, recent findings indicat
233 that the degree of methylation of the entire CpG-island or contribution of specific CpGs (n = 26) is
234 observed rapid methylation increases at the CpG-island overlapping the first 5'-untranslated region
239 atedly used over the past decade to describe CpG island promoter methylation in other tumor types, in
241 c landscape the FXN gene promoter, a typical CpG island promoter, was found to be in a transcriptiona
244 el filter always selected more features from CpG island promoters and the standard deviation filter a
247 rgently targeted to species-specific sets of CpG island promoters that extend beyond known imprint co
248 ation at hundreds of embryonically protected CpG island promoters, particularly those that are associ
250 is associated with increased methylation of CpG islands proximal to the promoters of these genes; fu
252 ed methylation profiling with the methylated-CpG island recovery assay in combination with microarray
253 umulating evidence supports a model in which CpG islands recruit Polycomb group (PcG) complexes; howe
254 tion status of a miR-494 promoter-associated CpG island region (-186 to -20), which was confirmed by
256 The majority of mammalian promoters are CpG islands; regions of high CG density that require pro
257 rtion of RGM proximal to promoter-associated CpG islands reports the gain or loss of DNA methylation.
258 ng abnormal DNA hypermethylation of promoter CpG islands, repressive chromatin modifications and enha
259 ficult to conduct, we used exact patterns in CpG island sequences and single character discrepancies
262 hine learning algorithms to demonstrate that CpG islands sequences can be characterized using k-mers.
264 b expression due to hyper-methylation in the CpG island shore region of mmu-miR-15b in both the sperm
266 Aberrant DNA methylation of CpG islands, CpG island shores and first exons is known to play a key
267 hed in flanking regions of active promoters, CpG island shores, binding sites of the transcription fa
268 ferential methylation was overrepresented in CpG island shores, enriched within gene bodies but not i
270 1500 and TSS200), 1st exons, 5'UTRs, 3'UTRs, CpG islands, shores, shelves, open seas and FANTOM5 enha
271 ion-induced tumors gained DNA methylation at CpG islands, some of which are associated with putative
274 bisulfite amplicon sequencing on a range of CpG island targets across a panel of human cell lines an
275 ysis of the human SAMHD1 promoter revealed a CpG island that is methylated in CD4(+) T cell lines (su
277 gene expression data to identify a subset of CpG islands that are most likely to regulate downstream
280 nriched in CG content, which correlates with CpG islands that display a low level of DNA methylation.
281 onjunction with hypermethylation of promoter CpG islands that presumably lead to genome instability a
282 validate a set of 67 CpG dinucleotides in 51 CpG islands that undergo age-related methylomic drift.
284 n frequency at transcription start sites and CpG islands, thereby reducing the potential for insertio
285 er characterized 982 DM loci in the promoter CpG islands to evaluate their potential biological funct
286 the key regulatory sequences (promoters and CpG islands) to expression of their respective transcrip
287 d breaks enriched at Ssb-binding regions and CpG islands, together with the accumulation of R-loops a
289 Upon detailed analysis of the TLR2 promoter CpG Island, we noted higher CpG methylation in this dysr
291 2 targets NuRD to unmethylated or methylated CpG islands where its distinct dynamic binding modes hel
292 uncertain significance occurred primarily in CpG islands, whereas differentially methylated loci in c
293 nding site in BCL6 exon1A within a potential CpG island, which is unmethylated both in cell lines and
295 Genbank), which shares the first exon and a CpG island with STL but is transcribed in the opposite d
296 generate lists of differentially methylated CpG islands with approximately 50% concordance with gene
297 variable methylation of promoter-associated CpG islands with levels ranging from 4% to 35%, even at
299 In vitro, DF increased DNA methylation of CpG islands within the KLF4 promoter that significantly
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