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1 colour channel opposite of their design (Cy3/Cy5).
2 t tissues using a fluorescent peptide (RK-10-Cy5).
3 idoamine) dendrimer nanoparticles (Dendrimer-Cy5).
4 with donor (Cy3) and acceptor fluorophores (Cy5).
5 BLM, and BLM disaccharide to the cyanine dye Cy5**.
6 accharide was doubly labeled with biotin and Cy5.
7 e quantification of cell-extracted dendrimer-Cy5.
8 re labeled with fluorophores such as Cy3 and Cy5.
9 es commonly used in DNA microarrays, Cy3 and Cy5.
10 containing RNAs with the fluorophores Cy3 or Cy5.
11 deceased MM patients were stained with LLP2A-Cy5.
12 es was more than tripled compared to FAM and Cy5.
13 onjugated with one of the FRET pair, Cy3 and Cy5.
14 both nuclear and optical in vivo imaging of Cy5-(111)In -DTPA-Tyr(3)-octreotate were performed in NE
15 dies revealed similar tumor uptake values of Cy5-(111)In-DTPA-Tyr(3)-octreotate and (111)In -DTPA-Tyr
17 efficiencies between the juxtaposed Cy3 and Cy5 5'-end labeled viral DNA ends in the synaptic comple
19 tion with Cy3 (donor), Cy5 (acceptor 1), and Cy5.5 (acceptor 2), distance changes between the donor a
20 beacon (rMB), thus bringing Cy5 (donor) and Cy5.5 (acceptor) into close proximity to allow fluoresce
21 nt normal tissue, we developed a chlorotoxin:Cy5.5 (CTX:Cy5.5) bioconjugate that emits near-IR fluore
22 that had been site specifically labeled with Cy5.5 (scVEGF/Cy) or inactivated scVEGF/Cy (inVEGF/Cy) a
24 optical probes based on Igs conjugated with Cy5.5 and Cy7 and demonstrate in animal models that thes
26 njugate arginine-glycine-aspartic acid (RGD)-Cy5.5 as a contrast agent in vitro, in vivo, and ex vivo
27 ologic blocker of MMP-2 and induction of CTX:Cy5.5 binding in MCF-7 cells following transfection with
28 e-2 (MMP-2) as evidenced by reduction of CTX:Cy5.5 binding in vitro and in vivo by a pharmacologic bl
30 of the magnetofluorescent nanoparticle CLIO-Cy5.5 by macrophages in infarcted myocardium was studied
35 or magnetic resonance imaging, modified with Cy5.5 dye (for near-IR fluorescence optical imaging), an
40 als (86Y or 111In) and the near-infrared dye Cy5.5 for dual modality PET (or SPECT) and fluorescence
42 nce intensity in mice confirmed that ICG and Cy5.5 had no favorable binding to tumor regardless of EG
45 y available NIR fluorophores IRDye800-CW and Cy5.5 in vitro for immunocytometry, histopathology and i
46 The reporter duplexes included donor NIR Cy5.5 indodicarbocyanine fluorochrome linked to the 3' e
49 ging agents, we site-specifically conjugated Cy5.5 or (64)Cu-1,4,7,10-tetra-azacyclododecane-N,N',N''
51 pancreata of mice injected with the MN-Ex10-Cy5.5 probe compared with control animals injected with
54 validation confirmed specific binding of Epo-Cy5.5 to the tumor cells, and this binding correlated wi
60 betic and diabetic NOD mice injected with MN-Cy5.5 was not significantly changed, reflecting the nons
61 for Survival Motor Neuron (SMN1) target, and Cy5.5 was the red channel acceptor for the glucuronidase
63 issue, we developed a chlorotoxin:Cy5.5 (CTX:Cy5.5) bioconjugate that emits near-IR fluorescent signa
67 odality nanoparticles using glycol chitosan, Cy5.5, and superparamagnetic iron oxide nanoparticles (S
69 435 (EGFr-) cancer cells were incubated with Cy5.5, EGF-Cy5.5, or the anti-EGFr monoclonal antibody C
70 etic NOD mice after the injection of MN-Ex10-Cy5.5, indicating the decrease of probe accumulation in
71 cancer cells were incubated with Cy5.5, EGF-Cy5.5, or the anti-EGFr monoclonal antibody C225 or EGF
72 fer (FRET) both in the case of Cy5.5-Cy7 and Cy5.5-800CW pairs of fluorochromes, which was sensitive
73 e energy transfer (FRET) both in the case of Cy5.5-Cy7 and Cy5.5-800CW pairs of fluorochromes, which
74 gher FRET efficiency observed in the case of Cy5.5-Cy7 pair was due to a larger overlap between the O
75 were able to visualize in vivo binding of a Cy5.5-labeled peptide specific for EGFR to the cell surf
76 n myocardial remodeling using a radiolabeled Cy5.5-RGD imaging peptide (CRIP) that targets myofibrobl
77 5-superparamagnetic iron oxide nanoparticle (Cy5.5-SPION) labeling and fluorescent microscopy, we dem
84 ance energy transfer between a Cy3 donor and Cy5 acceptor fluorescent pair placed on opposite sides o
85 a pair of fluorescent probes (Cy3 donor and Cy5 acceptor) placed on opposite sides of a nick in dupl
87 three arms of the junction with Cy3 (donor), Cy5 (acceptor 1), and Cy5.5 (acceptor 2), distance chang
88 e fluorescence of DNAs labeled with the Cy3, Cy5, Alexa Fluor 555, and Alexa Fluor 647 dyes and by (i
89 ission wavelengths of the two labels Cy3 and Cy5 allow for fluorescence resonance energy transfer in
91 wed lower maximal MEF factors of 10-fold for Cy5 and 2.5-fold for Cy3, because of the smaller amount
92 emained at a constant maximum of 28-fold for Cy5 and 4-fold for Cy3, compared to avidin-coated glass
93 tobleaching compared to organic dyes such as Cy5 and Alexa 647 in vitro, and 5-fold more photons comp
94 t the background array signal, normalize the Cy5 and Cy3 signals, score levels of differential hybrid
95 en the two fluorophores used in aCGH-usually Cy5 and Cy3-can be observed as a bias within the intensi
97 ition, the binding curves obtained with 8A11-Cy5 and DCP-UO22+ species changed from sigmoidal to hype
98 ingle injection of ACPPD dually labeled with Cy5 and gadolinium chelates enabled preoperative whole-b
99 nce energy transfer (FRET) between 605QD and Cy5 and Iowa Black RQ, we develop a single-QD-based apta
100 re coincubated with the optical analog LLP2A-Cy5 and mouse B220, CD4, Gr1, and Mac1 antibodies and an
102 rophore (Cy5), and the FRET-coupling between Cy5 and the redox center (copper) was used to study ET t
103 conjugation with a fluorescent cyanine dye (Cy5) and biotin, resulting in binding K(i) values of 17
104 resonance energy transfer to a reporter dye (Cy5) and that can benefit from the light harvesting prop
105 In one approach, multiple organic dyes (Cy5) and Trolox molecules are randomly distributed on de
106 es were labeled with an organic fluorophore (Cy5), and the FRET-coupling between Cy5 and the redox ce
108 le, Cy3, and fluorescence acceptor molecule, Cy5, and by varying the concentration of NgoMIV endonucl
109 r dye pairs (TMR-ATTO647N, Cy3-ATTO647N, TMR-Cy5, and Cy3-Cy5), we find that this phenomenon depends
110 rization and back-isomerization processes of Cy5, and Cy5-nucleobase interactions are shown to slow d
111 imately 540 nm), Cy3 (approximately 570 nm), Cy5 (approximately 670 nm), IRDye 680 (approximately 700
112 The indodicarbocyanine fluorophores Cy3 and Cy5 are extensively used as donor-acceptor pairs in fluo
114 he data show that Cy-ncAAs (based on Cy3 and Cy5) are tolerated by the eukaryotic ribosome in cell-fr
116 ble cell-penetrating peptides, which contain Cy5 as far red fluorescent donor and Cy7 as near-infrare
117 cceptor pairs, fluorescein/rhodamine and Cy3/Cy5, as a function of peptide concentration and donor-to
118 ent conformation, from that of either Cy3 or Cy5 attached by 3-atom tethers, with the long axes of th
119 of the indocarbocyanine fluorophores Cy3 and Cy5 attached to DNA via three-carbon atom tethers, showi
122 nzymatic oxygen-scavenging system eliminates Cy5 blinking, dramatically reduces photobleaching and im
124 e fluorescent signal of the carbocyanine dye Cy5 by using an engineered virus as a scaffold to attach
126 d be discriminated with equal confidence for Cy5 channel and reduced levels of confidence (>68%) for
127 Here we show that these rigidly inserted Cy3/Cy5 chromophores also exhibit two additional useful prop
129 e 8A11-Cy5 conjugate; incubation of the 8A11-Cy5 conjugate with saturating concentrations of DCP-UO22
130 l of protein G bind to each mole of the 8A11-Cy5 conjugate, (ii) binding of the first equivalent of D
131 fect on the binding of protein G to the 8A11-Cy5 conjugate; incubation of the 8A11-Cy5 conjugate with
136 kness of about 9mum while it was 40ng/mL for Cy5-conjugated Rabbit Anti-Mouse IgG which is 2.5x10(5)
138 tion of an Escherichia coli 50S subunit (50S(Cy5)) containing a Cy5-labeled L11 N-terminal domain (L1
141 ommonly used fluorophore indocarbocyanine-5 (Cy5) covalently attached to the 5'-terminus of double-he
150 the Cy5-DNA-Ag particle as compared to free Cy5-DNA resulted in an increased contribution of Cy5-DNA
154 DNA resulted in an increased contribution of Cy5-DNA-Ag to the correlation function of the mixture.
156 On this account, the adsorption behaviour of Cy5-dNTPs on a variety of surface coatings was studied b
157 mer-template DNA constructs labeled with Cy3/Cy5 donor-acceptor Forster resonance energy transfer (FR
158 everse molecular beacon (rMB), thus bringing Cy5 (donor) and Cy5.5 (acceptor) into close proximity to
159 , and 3,3'-Diethylthiadicarbocyanine iodide (CY5)-doped polymer as the reconfigurable gain media.
161 ave now applied single-molecule FRET to Cy3, Cy5 double-labeled LacI-DNA loops diffusing freely in so
162 l (NBA) or Trolox to the cyanine fluorophore Cy5 dramatically enhanced fluorophore photostability wit
163 tudy, the hybrid labeled somatostatin analog Cy5-DTPA-Tyr(3)-octreotate (DTPA is diethylene triamine
165 ion constant value was 387.7 +/- 97.9 nM for Cy5-DTPA-Tyr(3)-octreotate, whereas it was 120.5 +/- 18.
168 ystals by attaching either Cy3 dye (pink) or Cy5 dye (blue-green) to the components of the crystal, y
170 ng the fluorescence of a covalently attached Cy5 dye label whose fluorescence is (partly) quenched by
173 , but are spectrally compatible with Cy3 and Cy5 dye-labeled targets when using confocal laser scanne
176 hiometric amounts, and in a second approach, Cy5 dyes are covalently linked to Trolox in a precise 1:
178 resonance energy transfer (smFRET) between (Cy5)EF-G and (Cy3)tRNALys, we studied the translational
179 nal light-sheet fluorescence microscopy with Cy5-Fab-PAS200 confirmed better tracer extravasation in
181 ophysical properties of dye-conjugated FDNs (Cy5-FDNs and Cy3-FDNs) were characterized using single-m
186 nally, we observed specific quenching of the Cy5 fluorescent dye when the FeS cluster of a bound heli
188 licase is positioned in close proximity to a Cy5 fluorophore incorporated into the DNA molecule.
190 ons from rat liver as a source of ASGP-R and Cy5 fluorophore-labeled triGalNAc synthetic ligand as a
192 measurements probe the distance between Cy3/Cy5 fluorophores that label the ends of a short (15-nt)
194 ophilic 3'-phosphorothioate probe carrying a Cy5 FRET acceptor, and an electrophilic probe containing
196 the three stems of the DNAzyme with the Cy3/Cy5 FRET pair two stems at a time in order to gain deepe
202 y transfer efficiency, with unlinked QDs and Cy5 hydrazide producing nearly zero background signal in
203 nd to bleach significantly less than FAM and Cy5; i.e., the final fluorescence of Atto dyes was more
204 med by measuring the ratio of bound and free Cy5-insulin and FITC-glucagon in the presence of their r
205 laser was pulsed at 73 Hz and used to excite Cy5-insulin, while a vertically polarized 488 nm laser p
209 isible fluorophores (e.g., fluorescein, Cy3, Cy5), it should find broad applicability in FRET assays
212 f concept, we demonstrate the interaction of Cy5 labeled IgG and Alexa633 labeled anti-IgG using a si
216 the sliding via one-dimensional diffusion of Cy5-labeled adenovirus protease on DNA in the presence o
217 ing an increase in fluorescent intensity for Cy5-labeled analytes measured with a confocal microarray
218 fferences in the detection limits of Cy3 and Cy5-labeled cDNA, a potential concern for array data on
219 Diffusion-distance estimates for Cy3- and Cy5-labeled cDNAs were 3.8 mm and 2.6 mm, respectively,
220 strogen receptor, at the same time causing a Cy5-labeled coactivator to be recruited to the estrogen
221 50-nm-diameter single silver particle, and a Cy5-labeled complementary single-stranded oligonucleotid
222 Following systemic administration of the Cy5-labeled dendrimer (D-Cy5), we demonstrate dendrimer
226 ocalization experiments were performed using Cy5-labeled forked DNA and Alexa 555-labeled gp59 in the
228 luorescent quenching graphene oxide (GO) and Cy5-labeled G8 aptamer were used in this study to develo
230 by electroosmotic flow and mixed online with Cy5-labeled insulin, fluorescein isothiocyanate (FITC)-l
231 erve the sequence-independent interaction of Cy5-labeled interferon-inducible protein 16 with DNA and
232 hia coli 50S subunit (50S(Cy5)) containing a Cy5-labeled L11 N-terminal domain (L11-NTD) within the G
233 fluorescence spectral properties of Cy3- and Cy5-labeled oligonucleotides at various distances from t
234 l freedom, and dwell time distributions of a Cy5-labeled OTD (L1Cy5-7OTD) as it interacted with sever
235 t all the click clusters efficiently deliver Cy5-labeled pDNA into HeLa and H9c2 (2-1) cells, and com
236 e-molecule FRET (smFRET) measurements on Cy3/Cy5-labeled primer-template (p/t) DNA constructs in the
243 1 stalk of the large ribosomal subunit and a Cy5-labeled tRNA(Lys) in the ribosomal peptidyl-tRNA-bin
246 ed from the same source was used for Cy3 and Cy5 labeling and hybridized to the same array, signal in
250 and back-isomerization processes of Cy5, and Cy5-nucleobase interactions are shown to slow down these
251 llography to analyze the location of Cy3 and Cy5 on dsRNA, using complexes of an RNA stem-loop bound
252 her show that the alterations of the FBKs of Cy5 on probe hybridization can be used to differentiate
253 n of 8A11 with amine-reactive derivatives of Cy5 or Alexa 488 altered the binding curves obtained wit
255 egion (Cy2) and 8000-fold in the red region (Cy5) over conventional state-of-the-art image acquisitio
261 engineered virus as a scaffold to attach >40 Cy5 reporter molecules at fixed locations on the viral c
262 trate that organized spatial distribution of Cy5 reporter molecules on the capsid obviates this commo
267 However, no change was observed in the Cy3/Cy5 signal intensity ratio between continuously mixed an
271 een phycoerythrin-biotin (PhycoE-Biotin) and Cy5-streptavidin trapped in the two proteoliposome popul
275 bels (ROX, rhodamine 6G, HEX, FAM, TET, Cy3, Cy5, TAMRA) attached to oligonucleotide strands is repor
276 fluorescein and are compatible with Cy3 and Cy5 target labeling dyes when using confocal laser scann
277 fficiency of energy transfer between Cy3 and Cy5, that are attached to nucleic acids in this way, wil
278 e at the excitation wavelength of cyanine-5 (Cy5), thus providing an increase in fluorescent intensit
280 ed with the cyanine dye fluorophores Cy3 and Cy5 to quantify the melting/rebinding reaction by fluore
282 grams of the logarithms of the ratios of the Cy5 to the reference fluorophore fluorescence can be use
283 oxin B subunit-Alexa 647 and streptavidin-PE/Cy5, to membranes containing different amounts of ligand
285 d to single self-healing dye systems such as Cy5-Trolox, and as a proof-of-principle demonstration, w
286 uration of the three-way-junction alters the Cy5-upG or Cy5-upT interactions, therefore resulting in
287 the three-way-junction alters the Cy5-upG or Cy5-upT interactions, therefore resulting in a measurabl
288 rescence emission of the covalently attached Cy5 was largely quenched by FRET ('off'-state), whereas
289 ength and emission wavelength of Cyanines 5 (Cy5), was used to amplify the fluorescence signal intens
290 tation wavelength and emission wavelength of Cy5, was used to amplify the fluorescence signal intensi
291 ministration of the Cy5-labeled dendrimer (D-Cy5), we demonstrate dendrimer uptake in cells involved
292 TMR-ATTO647N, Cy3-ATTO647N, TMR-Cy5, and Cy3-Cy5), we find that this phenomenon depends on the nature
293 at the model drug (Cy3) and polymer bound to Cy5 were colocalized at an early time point before the m
295 mitting at the same wavelength as cyanine 5, Cy5) were found to bleach significantly less than FAM an
296 fibres labelled with different dyes (Cy3 and Cy5) were mixed, and the distribution of dyes inserting
297 erties of DNA oligomers, labeled with Cy3 or Cy5, when bound to quartz surfaces coated with metallic
298 ckbone was labeled with acceptor fluorophore Cy5, while donor fluorophores (Cy3 or EPI) were attached
299 r, the manner of interaction of both Cy3 and Cy5 with the terminus of the dsRNA is significantly diff
300 ially for far red emitting fluorophores like Cy5, without significantly altering current microarray p
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