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1 CypA (Cyclophilin A) is a peptidyl-prolyl isomerase prev
2 CypA antagonists, such as cyclosporines, are potent inhi
3 CypA binds to HCV's nonstructural protein (NS)5A to prom
4 CypA can either promote or inhibit viral infection, depe
5 CypA inhibitors prevented replication of residual HCV in
6 CypA interacts with its substrate via conformational sel
7 CypA modulates HIV-1 virion core detection by this class
8 CypA was previously reported to be required for the bioc
10 yclophilin A (CypA) chimera resulting from a CypA retrotransposition between exons 7 and 8 of the TRI
12 nemestrina and M. fascicularis identifies a CypA retrotransposition in the 3' untranslated region of
15 el protein systems, including cyclophilin A (CypA) and the minor allele variant of human alanine:glyo
16 The peptidyl-prolyl isomerase cyclophilin A (CypA) binds a proline-rich loop on the surface of HIV-1
18 ably, in Owl monkeys (omk), a cyclophilin A (CypA) cDNA has been transposed into the TRIM5 locus, res
19 mediated by TRIMCyp, a TRIM5-cyclophilin A (CypA) chimera resulting from a CypA retrotransposition b
20 The peptidyl-prolyl isomerase cyclophilin A (CypA) embraces an exposed, proline-rich loop on HIV-1 ca
21 ve site of the dynamic enzyme cyclophilin A (CypA) has been previously linked to its catalytic functi
22 ex in which HCV NS5A and host cyclophilin A (CypA) have been shown to be present together with the vi
23 he prolyl cis-trans isomerase cyclophilin A (CypA) in its substrate-free state and during catalysis w
24 f the CA-binding host protein cyclophilin A (CypA) inhibited HIV-1 uncoating and reduced the stimulat
26 d in cell lines indicate that cyclophilin A (CypA) is a component of HIV type 1 (HIV-1) virions, and
32 Recent studies showed that cyclophilin A (CypA) promotes NF-kappaB/p65 nuclear translocation, resu
34 yl prolyl cis/trans isomerase cyclophilin A (CypA) serves as a cellular receptor for the important im
35 Herein, we identify a novel Cyclophilin A (CypA) small molecule inhibitor (HL001) that induces non-
41 eractions with both CPSF6 and cyclophilin A (CypA) were essential for the unique dose-response curve.
42 Also, virion incorporation of cyclophilin A (CypA), a cellular peptidyl-prolyl isomerase that binds s
47 20-kDa protein, identified as cyclophilin A (CypA), and CypA was present on the surface of Hc yeasts.
48 al inhibition or silencing of cyclophilin A (CypA), as well as CA mutant viruses, we implicated CypA
49 d with host cell factors like cyclophilin A (CypA), can influence the efficiency of reverse transcrip
50 viral lifecycle by utilising cyclophilin A (CypA), cleavage and polyadenylation specificity factor-6
51 essential cellular co-factor cyclophilin A (CypA), HCV RNA replication is markedly diminished, provi
52 ablation and/or inhibition of cyclophilin A (CypA), here we show that expression of APOE4 and lack of
53 cs simulations to study human cyclophilin A (CypA), in order to understand the role of enzyme motions
54 ects of the host cell protein cyclophilin A (CypA), which binds to HIV-1 CA, on HIV-1 infection of no
55 ptidyl-prolyl isomerase (PPI) cyclophilin A (CypA), which is implicated in the regulation of protein
56 9), I(223), and M(228) in the cyclophilin A (CypA)-binding loop in B57(+) individuals with progressiv
57 tor 6 (CPSF6), as well as the cyclophilin A (CypA)-binding loop mutation P90A, all increase sensitivi
71 he known binding interaction between CsA and CypA was detected using both the MALDI- and LC-MS-based
73 ample containing NS5B(Delta21), NS5A-D2, and CypA specifically inhibits the interaction between CypA
78 bunit 6 (CPSF6) and cyclophilins (Nup358 and CypA), respectively, cannot replicate in primary human m
82 pecifically inhibits the interaction between CypA and NS5A-D2 without altering the one between NS5A-D
83 ermolecular hydrophobic interactions between CypA and the substrate, an intricate enzyme-substrate in
84 id substitutions can release HIV-1 from both CypA dependence in human cells and TRIM-Cyp restriction
87 This activity required capsid binding by CypA and correlated with CypA linkage to the TRIM5a caps
94 wer drug concentrations upon blocking the CA-CypA interaction suggests a protective role for CypA aga
95 depending on the capsid and the target cell, CypA-CA binding either stabilized or destabilized the ca
98 g ability of a retrotransposed CyclophilinA (CypA), resulting in novel antiviral specificity against
101 olates from the Main group naturally develop CypA-independent strategies to replicate in human cells.
105 tidyl-prolyl isomerase A (PPIA) that encodes CypA on HCV infection and replication of human hepatocyt
108 VSMC-derived intracellular and extracellular CypA are required for ROS generation and matrix metallop
109 tion of the second CA Cys (C218A) allows for CypA-induced conformational changes but alters the kinet
110 ne motif in the helix 4-5 loop important for CypA binding; instead, the helix 4-5 loop in these SIVs
112 Antagonism of the extracellular receptor for CypA (CD147) also reduced acetaminophen-induced liver in
114 ata define a previously undescribed role for CypA in AAA formation and suggest CypA as a new target f
115 To address this issue, we sought viruses for CypA independence using Debio-025, a cyclosporine A (CsA
116 le in HIV-1 CA assemblies in the escape from CypA dependence, by magic-angle spinning (MAS) NMR and m
119 d the dynamics profiles of the A92E and G94D CypA escape mutants closely resemble that of wild-type C
120 R spectra of wild-type and the A92E and G94D CypA escape mutants, we demonstrate that assembled CA is
125 rved due to dissociation of weakly bound His-CypA from the Ni2+-NTA moiety was eliminated, resulting
126 CsA (K(dCsA)) binding to the immobilized His-CypA was 23+/-6 nM, with on and off rates of 0.53+/-0.1
128 ) has been known for nearly two decades, how CypA interacts with the viral capsid and modulates HIV-1
129 These results provide new insights into how CypA stabilizes the HIV-1 capsid and is recruited to fac
130 orescence polarization-based assay for human CypA that can be adapted to high-throughput screening fo
132 el vif-sensitive antiviral activity of human CypA that may limit zoonotic transmission of SIV and the
133 eled cyclosporin A analog and purified human CypA to quantitatively measure the binding capacity of u
135 of the SP1 tail, the functionally important CypA loop, and the loop preceding helix 8 are modulated
136 show that many alternative conformations in CypA are populated only at 240 K and above, yet others r
138 ed by these substitutions was far greater in CypA-rich MT-2 and H9 cells than in Jurkat cells and per
139 pecific PCR revealed DNA hypermethylation in CypA-KD P19 cells, as the normally unmethylated paternal
140 x9 and Runx2 were all significantly lower in CypA knockdown chondrogenic cells than in wild-type cell
142 ication flow through the distinct regions in CypA and, therefore, as targets for future mutational st
144 es than in other cell types, we investigated CypA and CsA activities in HIV-1-infected primary human
145 ion of phenotype in cyclophilin A knockdown (CypA-KD) P19 cells, we observed a silent paternally expr
146 Our data demonstrated that mice lacking CypA (Ppia(-/-)) were resistant to acetaminophen toxicit
149 Thus, among multiple potential ligands, CypA is the primary mediator of immunosuppression by cyc
151 e (WT) ability is bimodal (both high and low CypA content limits HIV-1 replication), that the conform
152 is required during uncoating for maintaining CypA-CA interaction, which promotes optimal stability of
154 icted phenotype also restored the ability of CypA-restricted HIV-1 mutants to infect growth-arrested
155 s observed between the levels or activity of CypA and the extent of PRL-induced signaling and gene ex
156 r the isomerase or the chaperone activity of CypA to replicate in hepatocytes and that CypA is the pr
158 ransformed cells and show that the amount of CypA incorporated into virions is variable and that CsA
159 zed construct of CA, we show that binding of CypA induces a large-scale conformational change in CA t
160 In contrast, reduction of the binding of CypA to HIV-1 capsids in Jurkat T lymphocytes resulted i
162 es as a ligand for DC VLA-5, that binding of CypA to VLA-5 is at a site different from FN, and that t
164 nally important alternative conformations of CypA, confirming earlier synchrotron-based results.
165 e evidence for the important contribution of CypA as a pertinent component acting through NF-kappaB-S
166 ission of SIV and the first demonstration of CypA encapsidation into a virus other than human immunod
168 Cores isolated from WT virus depleted of CypA had an unstable-core phenotype, confirming a role o
171 he present data suggested that the effect of CypA on HIV-1 replicative (WT) ability is bimodal (both
177 es of SIVagm Vif to inhibit encapsidation of CypA and to increase viral infectivity were shared by rh
178 e we compare the conformational ensembles of CypA by multitemperature synchrotron crystallography and
181 demonstration of the epigenetic function of CypA in protecting the paternal allele of Peg3 from DNA
185 tion network, connectivity, and influence of CypA residues upon substrate binding, mutation, and duri
186 emonstrates that pharmacologic inhibition of CypA offers a potential therapeutic strategy via specifi
189 NA interference (RNAi)-mediated knockdown of CypA was established in two non-small-cell lung cancer c
195 ues that reside in the hydrophobic pocket of CypA where proline-containing peptide substrates and cyc
198 n of the speedup in rates in the presence of CypA, which is in notable agreement with experimental es
200 These results establish the relevance of CypA to tumor growth in vivo, specifically to proliferat
206 e cells) and aortas had greater secretion of CypA both at baseline and in response to Ang II stimulat
212 ication, these mutants no longer depended on CypA, suggesting that naturally occurring capsid substit
215 titutions into viruses that normally rely on CypA for replication, these mutants no longer depended o
216 duced dependence of the compensated virus on CypA that is normally essential for optimal infectivity.
221 BB breakdown by activating a proinflammatory CypA-nuclear factor-kappaB-matrix-metalloproteinase-9 pa
224 Cys-198 of CA since mutation to Ala renders CypA unable to induce this change and alters the kinetic
226 e CypA-binding pattern is achieved by single-CypA molecules simultaneously interacting with two CA su
227 d role for CypA in AAA formation and suggest CypA as a new target for treating cardiovascular disease
230 -sensitive host cell cyclophilins other than CypA contribute to the activity of IFN-alpha-induced blo
232 of CypA to replicate in hepatocytes and that CypA is the principal mediator of the Cyp inhibitor anti
239 lls than in wild-type cells, indicating that CypA plays a functional role in chondrogenic differentia
240 observations argue against the proposal that CypA binding is coupled with beta-hairpin formation and
241 Additional in vitro studies revealed that CypA, Roc1, and Roc2 cyclophilins bound to the viral rep
245 th previous reports, these data suggest that CypA protects HIV-1 from an unknown antiviral activity i
246 dditional increase in titer, suggesting that CypA inhibits HIV-1 replication in these cells because i
248 ication of HIV-1(P222A) in PBM, although the CypA content in HIV-1(H219Q/P222A) was comparable with t
250 The variants appeared to destabilize the CypA protein; the single amino acid changes led to rapid
252 that is partially overcome by changes in the CypA-binding loop and identify a mechanism for an HIV-1
253 ntified two mutations, A92E and G94D, in the CypA-binding loop of CA that confer the ability of HIV-1
256 1 replication), that the conformation of the CypA binding region of Gag is important for viral fitnes
257 that H219Q affected the conformation of the CypA-binding motif, rendering HIV-1 replicative in a low
258 pharmacological or genetic disruption of the CypA-CA interaction or by RNA interference-mediated depl
262 ts indicate that CA determinants outside the CypA-binding loop can modulate the dependence of HIV-1 i
264 ecreted APOE3, but not APOE4, suppressed the CypA-nuclear factor-kappaB-matrix-metalloproteinase-9 pa
265 and solid-state NMR further reveal that the CypA-binding pattern is achieved by single-CypA molecule
268 nstructs, we illustrate the ability of these CypA loop changes to partially restore replication of th
272 reduced binding of CD147-derived peptides to CypA and also diminished transport of CD147 to the plasm
273 HIV-1 infectivity increased in response to CypA knock-down to the same extent that it increased in
275 ive at inhibiting leukocyte migration toward CypA in vitro as well as in the recruitment of leukocyte
277 teasome inhibition prevented owl monkey TRIM-CypA restriction of HIV-1 reverse transcription, even th
280 losporine (CsA) washout assay, in which TRIM-CypA-mediated restriction of viral replication is used t
285 nimals coexpressing the TRIM5(TFP) and TRIM5(CypA) alleles took significantly longer to become infect
286 ocus, resulting in the expression of a TRIM5-CypA fusion protein (TRIMCyp) that restricts retroviral
288 B2 assembly is significantly attenuated upon CypA binding, and the dynamics profiles of the A92E and
290 , H219Q and H219P substitutions in the viral CypA binding loop confer the greatest replication advant
293 of HIV type 1 (HIV-1) virions, and that when CypA incorporation into virions is inhibited by treatmen
294 its a distinct CypA-binding pattern in which CypA selectively bridges the two CA hexamers along the d
296 We find that Vpr coimmunoprecipitates with CypA and that this interaction is disrupted by substitut
297 luorescence polarization in combination with CypA is highly advantageous for the accurate assessment
299 d capsid binding by CypA and correlated with CypA linkage to the TRIM5a capsid-specificity determinan
300 esults, we propose that the interaction with CypA is independent of the ability of Vpr to induce cell
301 EC conditioned media, and preincubation with CypA augmented Ang II-induced vascular smooth muscle cel
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