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1 ining, RNA degradation, and oligonucleosomal DNA cleavage).
2 increase levels of topoisomerase II-mediated DNA cleavage).
3 ation of recombinants (binding, synapsis and DNA cleavage).
4 o PAM-mediated stimulation of Cas9-catalysed DNA cleavage.
5 A5 was used to assess sites of double-strand DNA cleavage.
6 ormation of normally transient double strand DNA cleavage.
7 may employ a unique catalytic mechanism for DNA cleavage.
8 erse transcription and conduct second-strand DNA cleavage.
9 he iron-sulfur cluster, but had no effect on DNA cleavage.
10 e responsive to targeted HPV genome-specific DNA cleavage.
11 sess a sequence-specific ATPase activity for DNA cleavage.
12 condary to salicylate-mediated inhibition of DNA cleavage.
13 oligonucleotides attached to Rec12 following DNA cleavage.
14 ate metal ions of different atomic radii for DNA cleavage.
15 level of homolog pairing precedes programmed DNA cleavage.
16 shown to facilitate RNA-guided site-specific DNA cleavage.
17 as9 is the limiting factor for Cas9-mediated DNA cleavage.
18 slocation to the nucleus, where it initiates DNA cleavage.
19 ly 360 ns in H(2)O) which is responsible for DNA cleavage.
20 recombination involving transposase-mediated DNA cleavage.
21 ashion primes MjAgo for subsequent rounds of DNA cleavage.
22 turmeric enhanced topoisomerase II-mediated DNA cleavage.
23 et sequence recognition and protein-mediated DNA cleavage.
24 tosine base at the -4 position to facilitate DNA cleavage.
25 acid, and feruloylmethane, had no effect on DNA cleavage.
26 uring long-range communication and following DNA cleavage.
27 hat could otherwise result from RAG-mediated DNA cleavage.
28 this function is separable from its role in DNA cleavage.
29 s can catalyse Z-site-specific double-strand DNA cleavage.
30 ssed SOS induction as a readout of increased DNA cleavage.
31 stood but is associated with enzyme-mediated DNA cleavage.
32 erases has a more stringent requirement than DNA cleavage.
33 laining some ensemble biochemical results on DNA cleavage.
34 increased, likely because of indiscriminate DNA cleavage.
35 e than etoposide at inducing enzyme-mediated DNA cleavage.
36 III, which contains the tyrosine involved in DNA cleavage.
37 e2, and internal protein blocks also trigger DNA cleavage.
38 pable of effecting single- and double-strand DNA cleavage.
39 f FPV resolvase-DNA complexes and subsequent DNA cleavage.
40 metal ion cofactor (Cd(2)(+)) that supports DNA cleavage.
41 valent enzyme-DNA intermediate after initial DNA cleavage.
42 laborate to inhibit the hairpinning stage of DNA cleavage.
43 employ a two-metal ion mechanism to support DNA cleavage.
44 alpha utilizes a two-metal-ion mechanism for DNA cleavage.
45 nosyl homocysteine promotes this promiscuous DNA cleavage.
46 rase II poisons that generate novel sites of DNA cleavage.
47 ble tethering of the nuclease domains during DNA cleavage.
48 exerts a conformational control domain over DNA cleavage.
49 e, the most therapeutically valuable type of DNA cleavage.
50 form a cruciform structure that facilitates DNA cleavage.
51 dation of mutant mtDNA through site-specific DNA cleavage.
52 ide RNAs (gRNAs) to direct sequence-specific DNA cleavage.
53 and is necessary for efficient Ref-mediated DNA cleavage.
54 SPDL motifs position the strand for accurate DNA cleavage.
55 transition mutations without double-stranded DNA cleavage.
56 tional mechanisms must restrict RAG-mediated DNA cleavage.
57 C2c1 depends on both crRNA and tracrRNA for DNA cleavage.
58 functional protein capable of site-specific DNA cleavage.
59 full-length Cas9 and catalyzes site-specific DNA cleavage.
60 died in vitro, where light activation caused DNA cleavage.
62 d 6'-deoxy-BLM Z and the evaluation of their DNA cleavage activities as a measurement for their poten
63 n, ferulic acid, and feruloylmethane) on the DNA cleavage activities of human topoisomerase IIalpha a
64 nsistent with loss of transposition specific DNA cleavage activity and acquisition of DNA repair spec
65 mes displayed a marked loss of catalytic and DNA cleavage activity as well as a reduced affinity for
66 NA binding protein Cas9 that have lost their DNA cleavage activity could be used to recruit transcrip
68 Purified Sco5333 and Tbis1 displayed weak DNA cleavage activity in the presence of Mg(2+), Mn(2+)
69 is study provides a structural basis for the DNA cleavage activity of 1, will guide the design of syn
70 haride moiety plays an important role in the DNA cleavage activity of BLMs and ZBMs, (ii) the ZBM dis
72 repeat (TIR) specific DNA-binding activity, DNA cleavage activity, albeit uncoupled from TIR-specifi
73 he latter zinc-binding site is essential for DNA cleavage activity, given that the H937A and H942A mu
80 guide the design of synthetic DNA-activated DNA cleavage agents, and underscores the utility of natu
81 , are demonstrated to be much less effective DNA cleavage agents, thereby providing an explanation fo
84 e show the bulge and nexus are necessary for DNA cleavage and demonstrate that the nexus and hairpins
86 resistance to cleavage enzymes may occur if DNA cleavage and error prone repair does not render the
87 ion requires the enzyme to precisely control DNA cleavage and gate opening coupled with ATP hydrolysi
88 that Type III RM enzymes can dissociate upon DNA cleavage and go on to cleave further DNA molecules (
89 cleases that use dual-RNAs for site-specific DNA cleavage and highlights the potential to exploit the
90 leavage at high drug concentrations, whereas DNA cleavage and inhibition of religation occurs at low
93 plied in host organisms, they enable precise DNA cleavage and ligation without the gain or loss of nu
94 Previous studies have focused on examining DNA cleavage and ligation; however, the dynamic opening
97 minase subunit), A374V in UL32 (required for DNA cleavage and packaging), V296I in UL42 (encoding the
100 yrB subunits, that catalyzes double-stranded DNA cleavage and passage of a second double-stranded DNA
101 uclease targets the submicron locus, causing DNA cleavage and recruiting repair factors such as GFP-5
102 s that must coordinate fuel consumption with DNA cleavage and religation and with numerous conformati
105 equired to produce maximal quinolone-induced DNA cleavage and restricted the divalent metal ions that
108 mice brain by combining CRISPR-Cas9-mediated DNA cleavage and the efficient delivery of donor templat
109 The Cu(GTSCHCl) complex caused distinct DNA cleavage and Topo IIalpha inhibition unlike that for
110 apoptosis confirmed by nuclear condensation, DNA cleavage, and accumulation of S phase cell arrest.
115 of RAG1, which contains the active site for DNA cleavage, and RAG2, an accessory factor whose intera
116 arly stage of transpososome assembly, before DNA cleavage, and that mutations affecting immunity have
121 alpha (top2alpha) as measured by an in vitro DNA cleavage assay and cellular topoisomerase-DNA comple
122 olecules were evaluated in the Top1-mediated DNA cleavage assay and in the National Cancer Institute'
124 942A mutants were defective in both in vitro DNA cleavage assays and cellular recombination assays.
128 Free DNA binding suppresses Top1-catalyzed DNA cleavage at high drug concentrations, whereas DNA cl
130 V(D)J recombination entails double-stranded DNA cleavage at the antigen receptor loci by the RAG1/2
131 ce for DNA, enzyme and drug contributions to DNA cleavage at the gate, suggest a mechanism for DNA di
132 to exchange DNA strands after double-strand DNA cleavage at the two recombining att sites, and that
133 te-specific RAG endonuclease, which mediates DNA cleavage at two recombining gene segments and their
136 portant not only for regulating RAG-mediated DNA cleavage but also for the efficiency of RAG recruitm
138 evidence for looping being a requirement for DNA cleavage, but instead support a diffusive sliding of
139 if resulted in variants that did not promote DNA cleavage, but retained high-affinity DNA binding-thu
140 re recognized as promising intermediates for DNA cleavage, but their formation has thus far been limi
141 ed improvements in the precision of targeted DNA cleavage, but they often restrict the range of targe
144 provide mechanistic insights into RNA-guided DNA cleavage by Cpf1 and establish a framework for ratio
147 ge reactions; DNA 13 underwent double-strand DNA cleavage by independent single-strand cleavages at a
148 es the inhibitory effect of RAD51 on 3'-flap DNA cleavage by MUS81-EME1 through its RAD51 filament di
153 oint to an unusual mechanism of PT-dependent DNA cleavage by restriction enzymes in the face of parti
155 create guide RNAs that direct site-specific DNA cleavage by the Cas9 endonuclease in cultured cells.
158 domain of antigen receptors is initiated by DNA cleavage by the RAG1-RAG2 protein complex at sites f
161 te positioned at the active site for optimal DNA cleavage by the tyrosine hydroxyl nucleophile to fac
164 e corresponding Arg-321 mutation showed that DNA cleavage can still take place in the absence of this
165 es were compared with BLM and deglycoBLM for DNA cleavage, cancer cell uptake, and cytotoxic activity
167 ) affect the binding of the drug to the Top1-DNA cleavage complex and thus modulate the drug's Top1 i
168 ch as camptothecin (CPT), stabilize the Top1-DNA cleavage complex in a DNA sequence-dependent manner.
169 le intercalation into both free DNA and Top1-DNA cleavage complex, whereas larger substituents only a
171 icancer activity by reversibly trapping Top1-DNA cleavage complexes (Top1cc's) and inducing replicati
172 ulation of pathogenic topoisomerase-1 (Top1)-DNA cleavage complexes (Top1ccs) in murine models of ata
173 erations cause potentially irreversible Top2.DNA cleavage complexes (Top2cc), leading to Top2-linked
176 from camptothecin-stabilized topoisomerase I-DNA cleavage complexes in human breast cancer cells.
179 cterial thiophenes stabilize gyrase-mediated DNA-cleavage complexes in either one DNA strand or both
180 erials that target DNA gyrase by stabilizing DNA-cleavage complexes, but their clinical utility has b
181 I requires K(+) ions to prevent non-specific DNA cleavage, conditions which affect the translocation
182 nt antiproliferative effect of Cas9-mediated DNA cleavage confounds such measurement of genetic depen
183 rmined the 2.9-A-resolution structure of the DNA cleavage core of human topoisomerase IIalpha (TOP2A)
184 ha and -beta occupancy and etoposide-induced DNA cleavage data suggest factors other than local topoi
186 We introduce on-chip lysis and non-enzymatic DNA cleavage directly followed by a purifying step for r
187 er pylori (R.HpyAXII) and demonstrated their DNA cleavage, DNA glycosylase and AP lyase activities in
188 meric form of the enzyme is required for its DNA cleavage, DNA-binding, and nonhomologous end joining
190 dem array of zinc fingers, fused to the FokI DNA cleavage domain, to direct double-strand breaks (DSB
193 embly of zinc finger DNA-binding domain to a DNA-cleavage domain enables the enzyme machinery to targ
194 e highlight the function of RNA in mediating DNA cleavage during genome rearrangements and pathogen d
195 pecific endonuclease that catalyzes specific DNA cleavage during V(D)J recombination, which is requir
196 ed with on- and off-target DNA, we find that DNA cleavage efficiencies scale with the extent to which
198 While CRISPR/Cas9 executes double-stranded DNA cleavage efficiently, closure of the broken chromoso
199 the benefits and drawbacks of three types of DNA cleavage enzymes (zinc finger endonucleases, transcr
200 deal scaffolds for engineering site-specific DNA cleavage enzymes for genome editing applications.
206 ed to amplified loci, the resulting multiple DNA cleavage events can be a cause of false positive hit
208 pUL33 is necessary for one of the two viral DNA cleavage events required to release individual genom
209 per shows a role for pUL33 in one of the two DNA cleavage events required to release monomeric genome
210 tial rapid endonuclease activity, additional DNA cleavage events then occur more slowly, leading to f
212 se pair into another without double-stranded DNA cleavage, excess stochastic insertions and deletions
214 chromatin condensation, nuclear lamin A and DNA cleavage, fragmentation of the nuclear envelope, and
218 off-target analysis to assess Cas9-mediated DNA cleavage in human cells, we demonstrate that "enhanc
219 hile the aglycon (deglycobleomycin) mediates DNA cleavage in much the same fashion as bleomycin, it e
220 e results reveal the role of endonucleolytic DNA cleavage in restriction and yet point to diversity a
221 on that restriction enzymes caused extensive DNA cleavage in the absence of PT modifications in vivo.
222 companied by reduced transient double-strand DNA cleavage in the rDNA-promoter region and reduced pre
224 sigmoidal in nature, and rates and levels of DNA cleavage increased when metal ion mixtures were used
226 Camptothecin-stabilized topoisomerase I-DNA cleavage intermediates in mammalian cells are unique
228 The last detectable intermediate prior to DNA cleavage is a low spin Fe(III) peroxy level species,
229 displacement mechanism instead of oxidative DNA cleavage is confirmed by denaturing gel electrophore
230 pH-gated light-activated double-strand (ds) DNA cleavage is controlled by variations in electronic a
231 A design to improve the efficiency of target/DNA cleavage is critical to ensure the success of CRISPR
235 exhibit reduced chromatin decompaction after DNA cleavage, lesser focal recruitment of homologous rec
239 a difference in metal ion utilization during DNA cleavage mediated by human topoisomerase IIalpha and
243 e phosphate greatly enhances enzyme-mediated DNA cleavage, most likely by stabilizing the leaving 3'-
244 e., for strongly bound DNAs, the facility of DNA cleavage must involve other parameters in addition t
246 nt protein that lacks endonuclease activity, DNA cleavage of the 3'-5' strand relative to the wild-ty
247 bp/s at 25 degrees C) and a requirement for DNA cleavage of two recognition sites in an inverted hea
252 We describe an unprecedented DNA-catalyzed DNA cleavage process in which a radical-based reaction p
253 ted with our simulations that Cas9-catalyzed DNA cleavage produces 1-bp staggered ends rather than ge
254 rp pH optimum near 7.5, with greatly reduced DNA cleavage rate and yield when the pH is changed by on
255 duplex are tightly coupled, and the overall DNA cleavage rate is strongly dependent on Sin concentra
256 e find that activating Sin mutations promote DNA cleavage rather than simply stabilize the cleavage p
258 critical issue, this study characterized the DNA cleavage reaction of Escherichia coli topoisomerase
259 AG1 and RAG2 proteins catalyze site-specific DNA cleavage reactions in V(D)J recombination, a process
260 bservations, unrelated DNA-catalyzed radical DNA cleavage reactions require redox-active metals and l
262 Zinc-finger nucleases (ZFNs) are targetable DNA cleavage reagents that have been adopted as gene-tar
263 of MtTOP1 was expressed and found to retain DNA cleavage-religation activity and catalyze single-str
266 of TerL variants for defects in binding and DNA cleavage, revealing that the ATPase domain is the pr
268 7-azaindenoisoquinolines intercalate at the DNA cleavage site in DNA-Top1 covalent complexes with th
269 sulted in several compounds that have unique DNA cleavage site selectivities and potent antitumor act
270 calate between two base pairs outside of the DNA cleavage site, has been suggested to promote deforma
273 age distinguished 'intrinsic recognition' of DNA cleavage sites by topo IV from drug-induced preferen
277 oth an online archive of LHEs with validated DNA cleavage specificities and DNA-binding interactions,
278 f an extensive set of HE variants with novel DNA cleavage specificities using an integrated experimen
280 ors nucleases (TALENs) with broadly improved DNA cleavage specificity, establishing DB-PACE as a vers
284 up to 11 base pairs in length, which prevent DNA cleavage, still allow formation of a stable complex
285 varying thiophilicities in conjunction with DNA cleavage substrates that substituted a sulfur atom f
287 reas [Ru(phen)(3)](2+)* does not show direct DNA cleavage, the deprotonated form of 1H(2)O(2+)* does
292 e have also analyzed the metal dependence of DNA cleavage using Mg(2+) ions at different concentratio
295 In addition, the metal-ion dependence of DNA cleavage was sigmoidal in nature, and rates and leve
296 ablish the role of this sequence in accurate DNA cleavage, we have determined the crystal structure o
297 RVDelta140 genome replication and extent of DNA cleavage were comparable to those for revertant viru
300 hat DNA binding is far more promiscuous than DNA cleavage, yet the molecular cues that govern strand
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