1 specific information to efficiently identify
DNA footprints.
2 t sites corresponding approximately to their
DNA footprints.
3 ormation and repair, and (4) in vivo protein-
DNA footprints.
4 bout 55 have DNA-binding sites identified by
DNA footprinting.
5 DNA footprinting also showed specific protection of the
6 Gel mobility shift and
DNA footprint analyses further indicated structural chan
7 We show by both mutational and
DNA footprinting analyses that the binding of nogalamyci
8 DNA footprint analysis and gel shift assays suggest that
9 DNA footprint analysis of the B. subtilis dinR and recA
10 dentified the nan transcriptional start, and
DNA footprint analysis showed that NanR binds to a regio
11 DNA footprinting analysis further demonstrated the speci
12 DNA footprinting analysis identified unique protein bind
13 DNA footprinting analysis of the cII transgene in AFB(1)
14 DNA footprinting analysis revealed a 37-bp region that i
15 Here we show by
DNA footprinting analysis that MPG, but not UDG, bound t
16 EMSA and
DNA-footprint analysis showed that Sp1 and Sp3 are invol
17 rs a conformational change that shortens the
DNA footprint and relaxes a DNA bend.
18 ng at the CR and M promoters was analyzed by
DNA footprinting and a range of biophysical techniques.
19 Exonuclease III mediated in vivo
DNA footprinting and dimethyl sulfate in vivo footprinti
20 We have used
DNA footprinting and fluorescence melting experiments to
21 By
DNA footprinting and gel retardation analysis, we demons
22 ron endonuclease with its DNA target site by
DNA footprinting and modification-interference approache
23 DNA footprinting and nuclease protection studies of PcrA
24 proximately 20 bp from the dyad was shown by
DNA footprinting and photoaffinity labeling using recomb
25 DNA footprinting and purine-base interference assays dem
26 DNA footprinting and single-molecule fluorescence experi
27 interactions with nucleosomes were mapped by
DNA footprinting and site-directed DNA and protein cross
28 The mapping of
DNA footprints and affinity cleavage sites for small DNA
29 Gel shift,
DNA footprint,
and transcriptional analyses mapped the e
30 egion I-deleted sigma holoenzyme observed by
DNA footprinting,
and are likely of significance to the
31 Biochemical,
DNA footprinting,
and in vitro transcription assays indi
32 teraction evaluated by thermal denaturation,
DNA footprinting,
and in vitro transcription stop assays
33 ation interference, modification protection,
DNA footprinting,
and photocross-linking techniques.
34 The sizes of the
DNA footprints are consistent with the binding of two mo
35 Using
DNA footprinting as an assay, we show here that PriA als
36 DNase I
DNA footprint assays show that AerR containing B12 inhib
37 Gel shift and
DNA footprinting assays demonstrate that the SspA protei
38 Furthermore, methylation interference
DNA footprinting assays showed increased nuclear protein
39 ies using electrophoretic mobility shift and
DNA footprinting assays showed that both Sp1 and Sp3 pro
40 nal fusion, gel mobility shift analyses, and
DNA footprinting assays were used to confirm the direct
41 electrophoresis, immunodot blot assays, and
DNA footprinting assays, we demonstrated a unique wavele
42 DNA footprinting confirmed that interaction of Dda with
43 DNA footprinting confirmed that MprA protected large sec
44 In vivo genomic
DNA footprinting confirms the presence of nuclear protei
45 Furthermore, the Ape1-AP
DNA footprint does not change along its reaction pathway
46 Results of in vivo genomic
DNA footprinting experiments indicate that a protein(s)
47 DNA footprinting experiments revealed similarities betwe
48 Molecular docking simulations and
DNA footprinting experiments suggest a model where a PC4
49 DNA footprinting experiments were also conducted to furt
50 Previous
DNA footprinting experiments with C.AhdI have located th
51 region of A-tracts, a feature inferred from
DNA footprinting experiments.
52 s an intrinsic nick sensing function and its
DNA footprint extends 8-9 nt on the 3'-hydroxyl (3'-OH)
53 osines protected by in vivo dimethyl sulfate
DNA footprinting (
GAAGAGTG) in a luciferase construct (-
54 romatin and thereby generate precise protein-
DNA footprints,
high-resolution X-ChIP-seq achieves sing
55 Hydroxyl radical
DNA footprinting indicated that the site-specifically bo
56 The
DNA footprint is consistent with nucleosomes binding to
57 ctrophoretic mobility shift assay (EMSA) and
DNA footprinting,
members of the Sp family (Sp1, Sp3, an
58 apped DNA duplexes as tools to determine the
DNA footprint of T4 DNA ligase.
59 DNA footprinting of EcoSSB on wild-type and mutant promo
60 Using in vivo genomic
DNA footprinting of normal human epithelial cells (HaCaT
61 High-resolution
DNA footprinting of the DNA product of transposition att
62 DNA footprinting of the JBP.J-DNA complex with 1,10-phen
63 Using
DNA footprinting of the regions upstream of the liaXYZ a
64 Through systematic
DNA footprinting of the TNF (encoding tumour necrosis fa
65 DNA footprinting of the TxRE with 1, 10-phenanthroline-c
66 DNA footprinting of this fragment revealed a highly cons
67 On the basis of extended
DNA footprints of Region I-deleted holoenzyme, we also p
68 of the phosphodiester backbone resulted in a
DNA-footprinting pattern similar to that observed with t
69 To test this, we analyzed pelA
DNA footprinting patterns with various combinations of F
70 cleoside duplexes as a tool to elucidate the
DNA footprint provides an efficient strategy for footpri
71 he results from Western blotting, EMSAs, and
DNA footprinting reactions lead to the conclusion that A
72 of the protein-DNA interface by quantitative
DNA footprinting revealed new minor groove contacts and
73 DNA footprinting revealed that a major conformational di
74 nterrogation of the protein/DNA interface by
DNA footprinting showed similar accessibility to dimethy
75 Protein-
DNA footprinting showed that both genes were occupied by
76 In vivo
DNA footprinting shows a specific loss of occupancy at t
77 DNA footprinting studies confirmed the specific binding
78 DNA footprinting studies of PhoP-regulated promoters sho
79 DNA footprinting studies suggest that the RAG proteins i
80 ts of electrophoretic mobility shift assays,
DNA footprinting studies, and promoter-lac fusion experi
81 We also show using
DNA footprinting studies, that T7 ligase binds asymmetri
82 We have prepared novel
DNA footprinting substrates that contain all 64 symmetri
83 Using in-gel cleavage assays and
DNA footprinting techniques, I analyzed the catalytic ac
84 Upon excision, it leaves a short
DNA footprint that can create in-frame and frameshift in
85 y gel mobility shift assays and quantitative
DNA footprint titrations.
86 SWI/SNF was found by
DNA footprinting to contact tightly around one gyre of D
87 se electrophoretic mobility shift assays and
DNA footprinting to show that the DrHU N-terminal domain
88 DNA footprinting using exonucleaseIII and DNaseI, and me
89 on and missing nucleoside interference-based
DNA footprints using polypeptides to the N-terminal doma
90 died using equilibrium binding measurements,
DNA footprinting,
van't Hoff analysis and calorimetry.
91 A
DNA footprint was observed at (-371/-344 nt) with the nu
92 As another approach, in vivo
DNA footprinting was used and identified protein protect
93 Here, we report that prominent
DNA footprints were found in vivo on the unmethylated ma
94 The advent of
DNA footprinting with DNase I more than 35 years ago ena