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1 onal 270 bp DNA fragment and lacked a 450 bp DNA fragment.
2 ection of DNA, including a hepatitis B virus DNA fragment.
3 ich can further capture another protein-free DNA fragment.
4 unless both modified bases occur in the same DNA fragment.
5 d induce homologous recombination of a donor DNA fragment.
6 chain reaction (PCR) for an influenza viral DNA fragment.
7 scription initiation complex with a promoter DNA fragment.
8 a lower concentration to amplify its target DNA fragment.
9 and multiple copies of that gene are on one DNA fragment.
10 he sequencing-adapters and the length of the DNA fragments.
11 aptamer was enzymatically cleaved into short DNA fragments.
12 thods for the detection of sequence-specific DNA fragments.
13 we find Hha improves H-NS binding to target DNA fragments.
14 vertices within a network of double-helical DNA fragments.
15 in a chiral liquid crystal containing short DNA fragments.
16 rom samples that are enriched for methylated DNA fragments.
17 to pry polymerase from incompletely extended DNA fragments.
18 that was more apparent on particular genomic DNA fragments.
19 rom samples that are enriched for methylated DNA fragments.
20 rhang but not of 5' overhangs or blunt-ended DNA fragments.
21 gregation process in a system containing 458 DNA fragments.
22 tiple and often large (up to at least 44 kb) DNA fragments.
23 e G-quadruplex targets have often been short DNA fragments.
24 n of Spo11 protein covalently bound to small DNA fragments.
25 nucleosomes to extreme end positions on the DNA fragments.
26 first time PBD adducts with single-stranded DNA fragments.
27 igh-throughput cloning of single or multiple DNA fragments.
28 tical for centering mononucleosomes on short DNA fragments.
29 elective amplification of minute quantity of DNA fragments.
30 e chromosomes by dynamically linking distant DNA fragments.
31 target at its center to generate blunt-ended DNA fragments.
32 ultiple cognate sites on 100- to 300-kb-long DNA fragments.
33 to the Abl interactor 1, SHP-1, and nuclear DNA fragments.
34 tants were normal in unwinding linear origin DNA fragments.
35 d to the analysis of j-factors of very short DNA fragments.
36 d on micrometre scale for megabasepair-sized DNA fragments.
37 8 in complex with several origin of transfer DNA fragments.
38 ulti-gene circuitry assembled from different DNA fragments.
39 CHD4 interacts with PAX3-FOXO1 via short DNA fragments.
40 hat often require screening large numbers of DNA fragments.
41 mple droplets containing fluorescent dyes or DNA fragments.
42 bp) and of 23S rDNA A2143G results in three DNA fragments (108, 310 and 350pb), due to a conserved B
43 27 and 37 bp) and its absence originated two DNA fragments (264 and 281 bp) due to a 16 S rDNA conser
44 o methylated Illumina adapters, the CpG-rich DNA fragments (40-220 bp) are size selected, subjected t
45 cient non-mosaic targeted insertion of small DNA fragments (40-50 nucleotides) in 4.4-25.7% of F0 tad
46 Occurrence of 23S rDNA A2142G results in two DNA fragments (418 and 350 bp) and of 23S rDNA A2143G re
47 cally unfold structures in a human telomeric DNA fragment, 5'-(TTAGGG)4TTA, along three different tra
49 orphology and oligonucleosomal double-strand DNA fragments (also known as DNA ladder) are considered
51 virus by 6.5- to 200-fold, depending on the DNA fragment analyzed, thus indicating a profound defect
52 tructures and melting points of the chimeric DNA fragment and its complexes with perfect-matched and
55 s, microfluidic partitioning of long genomic DNA fragments and barcoding of shorter fragments derived
56 ethods: umbrella sampling simulations of two DNA fragments and direct observation of the aggregation
57 we demonstrate that TOP-PCR recovers minute DNA fragments and maintains the DNA size profile, while
58 echniques for detection of microbial genomic DNA fragments and opens up new possibilities for the ult
59 e, and high-throughput method to internalize DNA fragments and proteins labeled with organic fluoroph
62 EXO1), play a major role in generating these DNA fragments and that the cytoplasmic 3'-5' exonuclease
63 DNA samples between the number of surviving DNA fragments and their length, ancient DNA sequencing l
64 " read duplicates that represent independent DNA fragments and therefore, over-estimate the PCR dupli
65 o induce homologous recombination of a donor DNA fragment, and report the quantification of the frequ
66 , a dye is used to intercalate the amplified DNA fragments, and identifications of the pathogens are
67 lysis of incompetent streptococci, uptake of DNA fragments, and integration of strands of that DNA in
68 med the binding of YY1 to unprocessed let-7a DNA fragments, and treatment with YY1 shRNA increased le
69 al cell/glycocalyx damage (histone-complexed DNA fragments, annexin V, thrombomodulin, syndecan-1), p
70 Notably, the transcription of these miRNA DNA fragments appears resistant to conventional inhibito
72 easing the rate at which externally supplied DNA fragments are incorporated into the genome through h
74 e-5-methylenesulfonate (CMS); CMS-containing DNA fragments are then immunoprecipitated using a CMS-sp
75 s that genomic sequencing coverage of plasma DNA fragments around transcription start sites reflects
77 demonstrate a convenient rapid procedure for DNA fragment assembly using site-specific recombination
82 wn strategy enables the isolation of genomic DNA fragments bearing single, as well as multiple G-quad
84 e report that, despite the large size of the DNA fragment, both plasmid integration and duplication r
86 phoresis (FSCE), a drag-tag attached to each DNA fragment breaks linear charge-to-friction scaling, e
87 lows affinity enrichment of 5-hmC-containing DNA fragments but also enhances the kinetic signal of 5-
88 and on the inversion of a central 32-kb-long DNA fragment, but overall their genomes displayed a high
90 formation when it was bound to nixA and ureA DNA fragments by tethering (S)-1{[bis(carboxymethyl)amin
91 ication of the target deoxyribonucleic acid (DNA) fragments by using single-nucleotide-polymorphism p
92 In Drosophila, PcG proteins are bound to DNA fragments called Polycomb group response elements (P
94 rapping patterned cells inside gels, damaged DNA fragment can diffuse out of the nucleus and form a h
96 oach is also able to distinguish between two DNA fragments carrying both N6-methyladenine and 5-methy
97 CC-seq signal reveals regional enrichment of DNA fragments characteristic of alternating rather than
98 this hairpin formation or the addition of a DNA fragment complementary to the hairpin destroys the c
101 1 or its isolated CID domain to a methylated DNA fragment containing alternating purine/pyrimidines,
102 AP), RNA polymerase holoenzyme (RNAP), and a DNA fragment containing positions -78 to +20 of a Class
106 DBD was able to specifically bind to a short DNA fragment containing the fnbA promoter, suggesting th
108 eavage of a UG duplex generates the expected DNA fragments containing a 5'-terminal deoxyuridine mono
111 stranded DNA substrates to generate unhooked DNA fragments containing either an abasic site or a psor
112 zymes is that they are able to extract small DNA fragments containing modified sites on genomic DNA,
114 omotor region of DEXI but not with candidate DNA fragments containing other potential causal genes in
115 rough ultrathin solid-state nanopores, short DNA fragments containing thymine modifications were foun
116 lus RNA polymerase, sigma(A), and a promoter DNA fragment corresponding to the transcription bubble a
118 we used to simultaneously assess over 80,000 DNA fragments derived from nucleosome-free regions withi
119 ing in vitro on four plasmid DNAs containing DNA fragments derived from the genomes of sheep, drosoph
121 is also involved in the generation of small DNA fragments during the repair of high LET radiation-in
122 ion, we show that insertion of mitochondrial DNA fragments during the repair of induced double-strand
123 (SuRE), a method that assays more than 10(8) DNA fragments, each 0.2-2 kb in size, for their ability
125 ation, we combined CRISPR/Cas9-based genomic-DNA-fragment editing with chromosome-conformation-captur
126 molecular enrichment for promoter-containing DNA fragments enables the systematic mapping of interact
127 ession of a luciferase reporter plasmid, the DNA fragment encompassing the 3-bp deletion polymorphism
128 is-tagged CouR bound with high affinity to a DNA fragment encompassing the couAB promoter region, and
129 ke the probability of placement, the size of DNA fragments enriched for nucleosomes and/or whether nu
130 nal deep sequencing of short single-stranded DNA fragments enriched for RNA-primed nascent strands is
134 ows one-step cloning of up to four gene-size DNA fragments, followed by a second assembly of these co
137 lpha/primase complex assembles the short RNA-DNA fragments for priming of lagging and leading strand
140 present the discovery of a 36-kilo-base pair DNA fragment from Vibrio splendidus encoding enzymes for
142 previously identified in silico evidence of DNA fragments from a Pseudomonas-like bacteria integrati
143 , we describe an advanced system for joining DNA fragments from a universal library that automaticall
145 ctive strategy for directional subcloning of DNA fragments from Bacteria Artificial Chromosomes (BACs
147 nes to amplify 172, 163, 141, 129 and 108 bp DNA fragments from cat, dog, pig, monkey and rat meats,
148 rom regions where either genome has acquired DNA fragments from diverged genomes by homologous recomb
151 CRISPR-Cas adaptive immune systems capture DNA fragments from invading bacteriophages and plasmids
152 knock out (KO) and pull out (PO) chromosomal DNA fragments from naturally transformable Burkholderia
153 preparation protocols to better retain short DNA fragments from plasma, and applied these optimized m
154 n improved method for the isolation of small DNA fragments from serum using selective precipitation b
155 (BAC) vectors enable stable cloning of large DNA fragments from single genomes or microbial assemblag
156 to provide high-confidence identification of DNA fragments from uncultivated members of the Roseobact
158 nstrate that deep sequencing of the digested DNA fragments generated from these enzymes provides a fe
159 gargammel, a package that simulates ancient DNA fragments given a set of known reference genomes.
163 shearing, adapter ligation, and selection of DNA fragments harboring Mu flanking sequences by hybridi
164 is a truncated form of the genome into which DNA fragments harboring the structural genes are ligated
166 he GAL1 promoter, and the URA3 marker) and a DNA fragment homologous to the sequence upstream of the
168 verlap sequences, we can assemble up to five DNA fragments in a defined order and insert them into a
169 Poisson statistics to estimate the number of DNA fragments in a sample with a specific sequence.
171 drodynamically separate a wide size range of DNA fragments in a single run without the need for gels,
172 ies for the ultrasensitive quantification of DNA fragments in a wide variety of application areas usi
174 ed were all intronic T-DNA mutants and the T-DNA fragments in both the trigger T-DNA as well as in th
176 t allow the stable delivery of large genomic DNA fragments in mammalian systems is important for gene
177 ent for Sequence Analysis), isolates genomic DNA fragments in microfluidic droplets and performs TaqM
178 DNA transposon piggyBac can mobilize 100-kb DNA fragments in mouse embryonic stem (ES) cells, making
179 ful because they enable assembly of multiple DNA fragments in one reaction, at the cost of requiring
180 developed an approach to identify rearranged DNA fragments in sera, providing personalized biomarkers
181 lack of Trex2 results in the accumulation of DNA fragments in the cytoplasm of cornifying lingual ker
182 us behavior of the double helix happens when DNA fragments in the range of 100 bp are circularized wi
184 NII is fully embedded in CP, we inserted HBV DNA fragments in the sense orientation to determine thei
185 mbinants had received multiple donor-derived DNA fragments in the size range of 100 bp to 118 kbp, fr
186 Mre11 and Ku respond differently to shorter DNA fragments in vitro and to the DNA from high-LET irra
188 omes, FRET observed upon H1 binding to naked DNA fragments includes both intra- and inter-molecular r
190 that, in the absence of exogenous promoters, DNA fragments incorporating miRNA precursors can be deli
191 ials of mean force between the H4 tail and a DNA fragment indicate that contrary to the expectations
192 is highly correlated with the length of the DNA fragments, indicating that the sizes of PCR products
193 hat restriction did not affect the length of DNA fragment integration during natural transformation.
194 restrictive, in that they packaged only one DNA fragment into the head, whereas motors with the 120-
196 s by insertion of foreign (viral or plasmid) DNA fragments into clustered regularly interspaced short
198 ocation involves the integration of inactive DNA fragments into nuclear chromosomes, and this process
199 bacterial cell extracts to assemble multiple DNA fragments into recombinant DNA molecules in a single
200 grase to capture and integrate short foreign DNA fragments into the CRISPR locus, enabling adaptation
201 utions of monodisperse stiff double-stranded DNA fragments is known not to occur, despite the fact th
206 ch which moves computational complexity from DNA fragment length to fragment overlap, i.e., coverage,
207 ), we observe a highly structured pattern of DNA fragment lengths and positions around nucleosomes in
208 ndependent resource for automatic scoring of DNA fragment lengths diversity panels and biparental pop
210 ue to high rates of nucleotide damage, short DNA fragment lengths, low endogenous DNA content and the
213 equences have diverged to a degree that most DNA fragments longer than 50 bp are unique to just one s
214 ffect is attributable, in part, to the small DNA fragments (</=40 bp) directly produced by high LET r
215 measurements accomplished using non-specific DNA fragments mixed with samples, revealed the high spec
216 regulatory networks, however, large sets of DNA fragments need to be processed at high throughput an
218 e have recently shown that in fully solvated DNA fragments, nucleobases are particularly attractive f
220 ion pathway are located in a 25.2-kb genomic DNA fragment of CBB1, including cdhABC (coding for caffe
221 An interaction study of the C-dots and the DNA fragment of lambda bacteriophage was performed, and
222 Five promoter-reporter constructs containing DNA fragments of 0.74kb, 1.35kb, 1.84kb, 3.97kb and 4.76
225 In this study, we sequenced complementary DNA fragments of cultured human B-cells and obtained 879
226 med by simultaneously deleting and inserting DNA fragments of different sizes at a common genomic loc
227 LAMP amplification for 0.18 kbp and 0.23 kbp DNA fragments of femB and mecA genes, respectively.
229 sites, which can be used to produce a set of DNA fragments of identical length to study protein-induc
230 erful tool for unidirectional integration of DNA fragments of interest into a pre-determined genome l
232 on and partitioning of large single-stranded DNA fragments of the homologous chromosome pairs allows
233 Among the systems considered are a large DNA fragment, oligopeptides, and even entire proteins in
234 unction, a multitude of genes, and noncoding DNA fragments or on a number of lengthy sequence-typing
235 wild-type FlhD(4)C(2)-protected fragment and DNA fragments possessing mutations in one section of the
236 ing a Poisson distribution for the number of DNA fragments present in each chamber, the DNA concentra
237 udy reports the successful detection of long DNA fragments produced by PCR following extraction from
238 ch as transcriptomics, the millions of short DNA fragments (reads) produced by current sequencing pla
239 meters yield very similar results for longer DNA fragments, regardless of the nucleotide sequence, wh
240 ial gyrase complexes bound to 137- or 217-bp DNA fragments representing the starting conformational s
241 16 S rDNA TetR genotype resulted in a three DNA fragment restriction pattern (281, 227 and 37 bp) an
244 ues to show that PRH oligomers bound to long DNA fragments self-associate to form highly ordered asse
245 s for DNA extraction, PCR amplification, and DNA fragment separation, including the more conventional
250 l conditions, Ogston sieving is achieved for DNA fragments smaller than 500 base pairs, whereas repta
251 , Pyrococcus furiosus, actively incorporates DNA fragments (spacers) from both plasmid (foreign) and
252 ecule imaging with DNA chains assembled from DNA fragments such that a chain is labeled at designated
253 rticularly useful for inserting heterologous DNA fragments, such as GFP, into a specific genomic locu
254 this study, structural changes of 22-mer ht-DNA fragment (Tel22), induced by binding of ions (K(+),
255 rpin and a G-quadruplex in a single-stranded DNA fragment that is found in the promoter region of hum
256 isolated and characterized a 2.8 kb genomic DNA fragment that regulates expression of Rax in the dev
257 ion score-which allows the identification of DNA fragments that are unlikely to originate from presen
259 tes as low as 10(-8) and average 500-kb-long DNA fragments that can be assembled into haplotype conti
260 ng methods have limitations on the number of DNA fragments that can be simultaneously manipulated, wh
262 is exploits the reduced thermal stability of DNA fragments that contain base mismatches to detect sin
263 gile nucleosomes were defined by nucleosomal DNA fragments that were recovered preferentially in earl
264 sidering that just after dissociating from a DNA fragment the protein remains in close proximity to t
265 ifications, translocations and inversions of DNA fragments thereby modifying genome architecture, and
266 1L2 and Trex2 causes massive accumulation of DNA fragments throughout the cornified layers of the ton
267 Ecl18kI, interacts with a FRET pair-labeled DNA fragment to form two different DNA loop conformation
268 he attachment of modular barcode tags to the DNA fragments to be sequenced facilitated the simultaneo
269 Because the selective physical adsorption of DNA fragments to gold enable a direct read-out of region
270 d repairing DNA template flanked by homology DNA fragments to the target site, were demonstrated to g
272 rmination of microsatellite lengths or other DNA fragment types is an important initial component of
275 Furthermore, all three proteins bind to a DNA fragment upstream of the bmp2b transcription start s
278 ll lines: targeted cleavage of mitochondrial DNA fragments using CRISPR technology and removal of det
279 that enable the efficient assembly of linear DNA fragments, using reactions developed by Gibson for t
281 ridized microparticle bound and free cleaved DNA fragments was observed in real time and label-free f
282 single molecule mapping of telomere-terminal DNA fragments, we provide proof of principle for a novel
283 ] and mitochondrial DNA [mtDNA]) and nuclear DNA fragments were measured in plasma from APAP-overdose
284 encies of receipt and donation of recombined DNA fragments were observed in non-encapsulated lineages
285 us detections of four conserved HIV-1 B-type DNA fragments were performed in this integrated microflu
286 l ndm genes are located in a 13.2-kb genomic DNA fragment which also contained a formaldehyde dehydro
287 ing the method based on cyclization of short DNA fragments, which allows very accurate determination
288 ed to assemble plasmids from several ectopic DNA fragments, which are all introduced in yeast cells b
289 uble-strand breaks (DSBs) that include small DNA fragments, which are not repaired by the non-homolog
290 ure of S1-15 in complex with single-stranded DNA fragments, which may provide clues about the genesis
291 of stable RNAP complexes with model promoter DNA fragments whose downstream ends extend from +3 to +2
292 at provide a drag equivalent to an uncharged DNA fragment with a length (alpha) of 509 bases (effecti
294 ) blocks end-joining of double-stranded (ds) DNA fragments with 3' overhangs mimicking double-strand
295 nsor has the ability to detect complementary DNA fragments with a detection limit down to 20 DNA targ
298 verage with two signals: The first considers DNA fragments with only a single binding event, whereas
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