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1 erms of sequence context and the presence of DNA lesions).
2 polymerase with an incoming rNTP opposite a DNA lesion.
3 ymerase correctly and incorrectly bypasses a DNA lesion.
4 hpol eta bypass of the most common oxidative DNA lesion.
5 transcriptional induction in the absence of DNA lesion.
6 tion of pol delta from PCNA on stalling at a DNA lesion.
7 genic role for pol eta when replicating this DNA lesion.
8 DNA damage response to replication-blocking DNA lesions.
9 well as fork progression through UV-induced DNA lesions.
10 mulation at challenged replication forks and DNA lesions.
11 oduce cytotoxic O(6)-methylguanine (O(6)-mG) DNA lesions.
12 cially in the major groove) and tolerance of DNA lesions.
13 chanisms to bypass nuclear and mitochondrial DNA lesions.
14 he biological significance of this family of DNA lesions.
15 proliferating cell nuclear antigen (PCNA) to DNA lesions.
16 l of a large variety of structurally diverse DNA lesions.
17 ted DNA substrates, such as those containing DNA lesions.
18 rand cross-links are exceptionally bioactive DNA lesions.
19 for maintaining replication bypass of these DNA lesions.
20 nisms to detect and repair multiple types of DNA lesions.
21 ures of transcription across different bulky DNA lesions.
22 by recruiting the SMC5/6 cohesion complex to DNA lesions.
23 etic modification products of 5caC behave as DNA lesions.
24 y) represent an important class of ethylated DNA lesions.
25 ven DNA photolyases, which remove UV-induced DNA lesions.
26 cally adducted, toxic 5'-adenylated (5'-AMP) DNA lesions.
27 ses needed to carry out error-free bypass of DNA lesions.
28 es to promote error-prone replication across DNA lesions.
29 it to efficiently attend to large numbers of DNA lesions.
30 to enzymes or agents that cause longer-lived DNA lesions.
31 ttenuates TCR but enhances cell tolerance to DNA lesions.
32 consistent with replication fork stalling at DNA lesions.
33 ity, cells have evolved mechanisms to repair DNA lesions.
34 ctive site can accommodate highly distorting DNA lesions.
35 se important for repairing multiple types of DNA lesions.
36 g the early stage of NER of UV light-induced DNA lesions.
37 lation vertex, creating spatially correlated DNA lesions.
38 the idea that toxicity arose from oxidative DNA lesions.
39 ensable for repairing TOP1 inhibitor-induced DNA lesions.
40 s (DSBs), a ubiquitination cascade occurs at DNA lesions.
41 prevents the persistence and propagation of DNA lesions.
42 s the misreplication of structurally diverse DNA lesions.
43 ER pathway, i.e. recognition and excision of DNA lesions.
44 hereby preventing the removal of UVB-induced DNA lesions.
45 ants need to prevent irreversible UV-induced DNA lesions.
46 s at the inner surface of PCNA is induced by DNA lesions.
47 A phosphorylation modes during the repair of DNA lesions.
48 nosine (8-oxoG), is one of the most abundant DNA lesions.
49 ub, cells exhibit accumulation of unrepaired DNA lesions.
50 the regulation of susceptibility to acquire DNA lesions.
51 d DNA to promote the signaling and repair of DNA lesions.
52 uffer from genomic instability and increased DNA lesions.
53 cts of radiation and to explain formation of DNA lesions.
54 the stabilization and exclusion of Rad9 from DNA lesions.
55 n Mre11/Rad50 nuclease activities on protein-DNA lesions.
57 orating rNTPs opposite undamaged DNA and the DNA lesions 7,8-dihydro-8-oxo-2'-deoxyguanosine and cycl
59 c D2 mice manifested increased mitochondrial DNA lesions (8-oxoguanine) exclusively localized to glom
61 rt that discrimination between the oxidative DNA lesion, 8-oxoguanine (oxoG) and its normal counterpa
62 to investigate how the most common oxidative DNA lesions, 8-oxoguanine (8oxoG) and thymine glycol (Tg
65 gest that whereas DNA polymerase stalling at DNA lesions activates ATR to protect cell viability and
66 ecialized TLS DNA polymerases to replicate a DNA lesion, allowing stringent DNA synthesis to resume b
67 DNA repair in response to different types of DNA lesions allows for a better understanding of the eff
69 thways that originates endogenously from the DNA lesion and activates intrinsic DNA repair mechanisms
71 ns about the repair of the carboxymethylated DNA lesions and about the implications of these lesions
72 specialized ways opposite a diverse array of DNA lesions and act in a predominantly error-free manner
73 treated DNA due to an ability to bypass both DNA lesions and bisulfite intermediates, allowing signif
74 an be trapped by carcinogenic and endogenous DNA lesions and by camptothecin, resulting in transcript
75 ever, there was no efficient protection from DNA lesions and cell death induced by UVA radiation or n
78 omplex in the repair of specific MMS-induced DNA lesions and elucidate the interplay between HR and t
80 t the way in which repair enzymes search for DNA lesions and form protein complexes that act in DNA r
81 ting cells cope with accumulating endogenous DNA lesions and how these ultimately affect the physiolo
82 f ATM signalling as evidenced by accumulated DNA lesions and increased cell sensitivity to irradiatio
83 conserved role in the initial processing of DNA lesions and influencing their subsequent repair path
85 lular activities that prevent duplication of DNA lesions and maintain genomic integrity, which is cri
87 nce shows that BRCA1 is quickly recruited to DNA lesions and plays an important role in the DNA damag
88 UNG2-dependent repair of floxuridine-induced DNA lesions and promotes tumor cell survival following e
89 eckpoint pathway is activated in response to DNA lesions and replication stress to preserve genome in
90 cur for DNA repair factors to gain access to DNA lesions and restore original chromatin configuration
91 n part by regulating ISWI factors loading at DNA lesions and supporting transcriptional programs requ
93 DNA-PK binds DNA ends that result from many DNA lesions and that blocking ABCDE phosphorylation sequ
94 to and significantly overlaps with PARP1 at DNA lesions and that the interaction between Sam68 and P
96 l IV recruitment is dependent on the type of DNA lesion, and that interactions with proteins other th
97 g translesion DNA synthesis (TLS) on certain DNA lesions, and accumulating data suggest that Pol IV m
107 different amounts and/or different types of DNA lesions are produced in the presence or absence of o
108 int monitors the cohesin-dependent repair of DNA lesions arising from DNA demethylation, which preven
110 es for the two proteins in the processing of DNA lesions, as BRCA2 mutants contained more short delet
113 ropose that poleta's ability to bypass bulky DNA lesions at telomeres is critical for proper telomere
117 ability to respond properly to an unrepaired DNA lesion blocking replication promote genomic instabil
118 ability which is not triggered by endogenous DNA lesions but by a dysregulation in the DNA polymerase
119 enotypes are not a simple result of a single DNA lesion, but are instead due to interactions of the f
120 tolerance of replication fork-stalling bulky DNA lesions, but whether Rad18 mediates tolerance of bul
122 hat WRAP53beta targets the E3 ligase RNF8 to DNA lesions by facilitating the interaction between RNF8
123 trinsic capacity for transcription bypass of DNA lesions by incorporation or misincorporation of nucl
124 f oxidative stress- and inflammation-induced DNA lesions by the base excision repair (BER) pathway pr
127 les to replisome progression by facilitating DNA lesion bypass, extension of D-loops, or excision rep
129 data suggest that acrolein-induced exocyclic DNA lesions can be bypassed by mitochondrial DNA polymer
130 a genuine repair mechanism in which complex DNA lesions can be removed without generation of highly
132 f homologous recombination and the repair of DNA lesions, can partially replace RTEL1 in the processi
135 Unlike some other oxidatively generated DNA lesions, cdG and cdA are repaired by the human nucle
137 important insights into how these alkylated DNA lesions compromise the flow of genetic information,
141 ranslesion synthesis opposite the UV-induced DNA lesion cyclobutane pyrimidine dimer and was recently
142 platin derivatives can form various types of DNA lesions (DNA-Pt) and trigger pleiotropic DNA damage
143 Furthermore, there was evidence for oxidized DNA lesions, double-strand DNA strand breaks, and pronou
144 are important for the removal of MMS-induced DNA lesions due to their role in regulating the basal an
145 g agent widely used in chemotherapy, induces DNA lesions during male mouse meiosis that persist unrep
146 damage tolerance (DDT) enables bypassing of DNA lesions during replication, thereby preventing fork
147 of apoptosis caused by potentially oncogenic DNA lesions elicited by RAG1/2-induced gene rearrangemen
148 t of chemically stable analogues of unstable DNA lesions enables accurate study of polymerase bypass.
153 icient, and high-fidelity process that mends DNA lesions formed during cellular metabolism; these les
154 2'-deoxyguanosine (O(6)-MeG) is a ubiquitous DNA lesion, formed not only by xenobiotic carcinogens bu
156 excision repair that preferentially removes DNA lesions from the template strand that block transloc
157 r its inactivation during the induction of a DNA lesion, generate abnormal oscillatory SPB movements
159 genic outcomes derived from these unrepaired DNA lesions has been hindered by the low throughput of e
160 one of the most commonly occurring types of DNA lesion, have been associated with three neuropatholo
161 lymerases (Pols) promote replication through DNA lesions; however, little is known about the protein
162 H2A) formed by Rad3/ATR checkpoint kinase at DNA lesions; however, the putative scaffold interactions
163 Carcinogens induce malignancies by creating DNA lesions (i.e., adducts) that can result in mutations
164 igated the effects of five carboxymethylated DNA lesions, i.e. O6-CMdG, N6-CMdA, N4-CMdC, N3-CMdT and
165 lex with PARP-1 in cells and is recruited to DNA lesions in a PARP-1-dependent manner, but independen
166 overcome this blockade by synthesizing past DNA lesions in a process called translesion synthesis (T
168 owing to the difficulty of inducing defined DNA lesions in cells and tissues without simultaneously
173 ive to immunoglobulin loci; it can instigate DNA lesions in non-immunoglobulin genes and thus stringe
175 dinic (AP) sites, the most frequently formed DNA lesions in the genome, inhibit transcription and blo
177 chromosome scale map of ultraviolet-induced DNA lesions in the human genome, and reveal the sequence
178 extracts or purified enzymes, we found that DNA lesions in the nucleosome core are preferentially re
179 n of low, physiologically relevant levels of DNA lesions in the respective strands of defined nucleot
180 n repair (NER) dedicated to rapid removal of DNA lesions in the transcribed strand of actively transc
181 red to determine whether BPA induces similar DNA lesions in vivo at environmentally relevant doses; h
182 radical is a powerful oxidant that generates DNA lesions including the stereoisomeric R and S 5',8-cy
183 In cells, these compounds form a mixture of DNA lesions, including nucleobase monoadducts, interstra
184 ep is employed during repair of a variety of DNA lesions, including oxidative and alkylation damage.
185 -rate/reactive oxygen species cause dramatic DNA lesion increases that are not repaired due to PARP i
186 served pathway that removes helix-distorting DNA lesions induced by a plethora of mutagens, including
187 y and quantified the spatial distribution of DNA lesions induced by charged particles in a mouse mode
189 first quantitative human genome-wide map of DNA lesions induced by ultraviolet (UV) radiation, the u
190 n repair (NER) is critical for the repair of DNA lesions induced by UV radiation, but its contributio
192 types of DSBs and reveal that the density of DNA lesions influences the choice of DSB repair pathway
193 equence, the burden of unrepaired endogenous DNA lesions intensifies, progressively leading to genomi
195 n of plasmids carrying defined site-specific DNA lesions into mammalian chromosomes, using phage inte
196 ounter of a replication fork with a blocking DNA lesion is a common event that cells need to address
197 the hindrance presented by the location of a DNA lesion is dependent on the structural requirements f
200 nal DNA repair proteome for removing harmful DNA lesions is a prerequisite for an appropriate DNA dam
203 se polymerases are specialized for different DNA lesions, it is unclear if they interact differently
204 analysis and evaluated chromatin structure, DNA lesion load, glutathione content, and intracellular
210 hich are synthetic derivatives of UV-induced DNA lesions, namely, thymidine (6-4) photoproducts.
213 r (MMR) and the repair of the chemosensitive DNA lesion, O6-methylguanine (O6-MeG), by O6-methylguani
214 , we monitored oxidatively induced clustered DNA lesions (OCDL), DNA double-strand breaks (DSB), apop
215 ts into the impacts of the carboxymethylated DNA lesions on DNA replication in human cells, revealed
216 he quantitative assessment of the effects of DNA lesions on the efficiency and fidelity of transcript
218 wind substrates with site-specific oxidative DNA lesions or bound by the mitochondrial transcription
219 damage response proteins (DDR) activated by DNA lesions or chromatin alterations recruit the DNA rep
220 ility, since replisomes invariably encounter DNA lesions or other structures that stall or collapse r
221 s affinity for factors recognizing different DNA lesions or telomeres, helping to direct the SLX4 com
223 xcision repair (BER) removes at least 20,000 DNA lesions per human cell per day and is critical for t
224 iously known about how the carboxymethylated DNA lesions perturb DNA replication in human cells.
225 ns acting as repair enzymes for UV-B-induced DNA lesions (photolyases) or as UV-A/blue light photorec
227 UV light to introduce transcription-blocking DNA lesions randomly in the genome prior to bromouridine
228 ur work elucidates essential aspects of FAN1-DNA lesion recognition and a unique mechanism of incisio
229 cific endonuclease that processes UV-induced DNA lesions, recombination intermediates, and inter-stra
231 on on leukemia development in mice harboring DNA lesions resembling those acquired during human stem
232 purines (cdPus) are common forms of oxidized DNA lesions resulting from endogenous and environmental
233 studies on TLS in eukaryotes have focused on DNA lesions resulting from ultraviolet (UV) radiation ex
234 Bs, but is not released from the MMC-induced DNA lesions, resulting in a defect in homologous recombi
239 oxidant tempol to suppress RNS, not only are DNA lesions significantly reduced, but also the onset of
240 ions (Pig-a gene mutation of RBC(CD24-)) and DNA lesions (single strand breaks/alkali labile sites) w
242 ng of this E3 ligase complex directly at the DNA lesion site, causing the assembly of the UV-DDB-CUL4
243 nt capacity to identify and stabilize at the DNA lesion sites, and this function is facilitated in th
245 enzyme in base excision DNA repair (BER) of DNA lesions, specifically interacts with NPM1 within nuc
248 rting dNMPs opposite unmodified templates or DNA lesions, such as 8-oxo-2'-deoxyguanosine or cyclobut
249 Archaeal Pri S can bypass common oxidative DNA lesions, such as 8-Oxo-2'-deoxyguanosines and UV lig
252 NER activities co-exist and excise Gh and Sp DNA lesions, suggesting that the relative NER/BER produc
253 ne-DNA glycosylase (Fpg)-sensitive oxidative DNA lesions suppressible by antioxidant cotreatment.
254 rent, early replicating, and AID-independent DNA lesions, termed early replication fragile sites (ERF
256 f nucleotides during DNA replication or from DNA lesions that arise between replication cycles and ar
259 rand cross-links (ICLs) are highly cytotoxic DNA lesions that block DNA replication and transcription
261 Interstrand crosslinks (ICLs) are toxic DNA lesions that cause severe genomic damage during repl
262 trand cross-links (ICLs) are extremely toxic DNA lesions that create an impassable roadblock to DNA r
263 , we have identified a source of spontaneous DNA lesions that drives instability at preferred genomic
264 ts the specific classes of radiation-induced DNA lesions that evade repair and result in germline mut
265 DNA-protein cross-links (DPCs) are bulky DNA lesions that form both endogenously and following ex
267 d with cross-overs suggests that most of the DNA lesions that initiate recombination between homologs
268 lent DNA-protein crosslinks (DPCs) are toxic DNA lesions that interfere with essential chromatin tran
269 cals that themselves create life-threatening DNA lesions that must be repaired within minutes to mini
271 is influenced by the physical nature of the DNA lesion, that is, miscoding versus non-instructional.
272 ding that a mutagenic benzo[a]pyrene-derived DNA lesion, the base-displaced intercalated 10R-(+)-cis-
273 bypass of the 8-oxoguanine and thymine dimer DNA lesions, though with a 10(3) and 10(2)-fold lower ef
274 n protein Crb2 binds to modified histones at DNA lesions to mediate the activation of Chk1 by Rad3ATR
277 lar neurodegenerative diseases; however, the DNA lesions underpinning disease etiology are unknown.
278 mes and frequently stall when they encounter DNA lesions, unusual DNA structures, RNA polymerases, or
280 T7 replisome is fundamentally permissive of DNA lesions via pathways that do not require fork adjust
283 ecruitment of 53BP1-T1609A/S1618A to mitotic DNA lesions was associated with significant mitotic defe
284 reactive oxygen species (ROS) that can cause DNA lesions, we examined the role of NBS1 in macrophage
285 of the transcriptional properties of several DNA lesions, we have engineered specific fluorescent rep
286 imaging and laser microirradiation to induce DNA lesions, we show that the local chromatin relaxation
287 The results showed that the oxidant-induced DNA lesions were significantly reduced in cells pre-trea
288 ght that TLS was the last recourse to bypass DNA lesions when repair and nonmutagenic DA mechanisms h
289 poration of dCMP opposite these minor-groove DNA lesions, whereas only Pol V was indispensable for th
290 xic or mutagenic effects of various types of DNA lesions, which are sensed by distinct pathways to re
291 is only degraded in the presence of specific DNA lesions, which are the substrates of nucleotide exci
292 uch as Rev1, have the ability to bypass some DNA lesions, which can circumvent the process leading to
293 aC) suggests these modified cytosines act as DNA lesions, which could threaten genome integrity.
295 lymerases can copy over replication blocking DNA lesions while temporarily leaving them unrepaired, p
298 or clustered mutagenesis is the induction of DNA lesions within unusually long and persistent single-
299 inhibition aggravates replication-originated DNA lesions without inducing S phase arrest in cells lac
300 at the expense of stable binding at sites of DNA lesions, without diminishing cellular UV resistance
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