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1 ease that is associated with the replicative DNA polymerase.
2 r a model DNA adduct O(6)-benzylguanine by a DNA polymerase.
3 and verified they are active substrates for DNA polymerase.
4 ZI: TP and BIM: TP) by an engineered KlenTaq DNA polymerase.
5 ing proofreading DNA polymerases but not Taq DNA polymerase.
6 lity affects replication by bacteriophage T7 DNA polymerase.
7 e polymerase (Pol) delta, the lagging strand DNA polymerase.
8 rom bacteriophage T4 and a strand-displacing DNA polymerase.
9 mistry steps in the canonical mechanism of a DNA polymerase.
10 nd influence the enzymatic properties of the DNA polymerase.
11 rimers that are elongated by the replicative DNA polymerases.
12 the clamps serve as processivity factors for DNA polymerases.
13 ics of non-fluorescent native nucleotides by DNA polymerases.
14 alance of dNTP binding and dissociation from DNA polymerases.
15 tspots and lesion bypass fidelity of several DNA polymerases.
16 esizes short RNA primers of defined size for DNA polymerases.
17 on base selectivity and misincorporation by DNA polymerases.
18 that it provides only a minimal obstacle for DNA polymerases.
19 the presence of human translesion synthesis DNA polymerases.
20 NA synthesis resembling those of replicative DNA polymerases.
21 into heteroduplex DNA and to be extended by DNA polymerases.
22 of low-fidelity translesion synthesis (TLS) DNA polymerases.
23 le to be failed in PCR than non-proofreading DNA polymerases.
24 rance mechanism over error-prone translesion DNA polymerases.
25 iginally studied for its role in stimulating DNA polymerases.
26 prepared and tested as substrates for human DNA polymerases.
27 ross-link blocks DNA replication by varphi29 DNA polymerase, a highly processive polymerase enzyme th
28 nclude the Mcm2-7 complex, the CMG helicase, DNA polymerases, a Ctf4 trimer hub and the first look at
29 ovide a view of cis-BP-N (2)-dG adducts in a DNA polymerase active site, and offer a basis for unders
30 ide screen in Saccharomyces cerevisiae using DNA polymerase active-site mutants as a "sensitized muta
32 -1 reverse transcriptase (RT) possesses both DNA polymerase activity and RNase H activity that act in
33 which consequently leads to the recovery of DNA polymerase activity inhibited by the detection probe
39 ome, a 340-kilodalton complex of primase and DNA polymerase alpha (Polalpha), synthesizes chimeric RN
40 eptide was able to displace the Ctf4 partner DNA polymerase alpha from the replisome in yeast extract
46 MCM-GINS (CMG) replicative DNA helicase with DNA polymerases alpha, delta, and epsilon and other prot
49 nucleic acid processing enzymes, including a DNA polymerase, an RNA polymerase and a DNA ligase, to u
50 a novel protein contact between the Y-family DNA polymerase and the B-family replication polymerase (
51 tations in the replication-repair-associated DNA polymerases and a distinct impact of microsatellite
52 ication of genomes of individual cells using DNA polymerases and high-throughput short-read DNA seque
53 a redefines the traditional concept of human DNA polymerases and indicates potential new functions of
57 stoichiometries of the replicative helicase, DNA polymerase, and clamp loader complexes are consisten
58 he HP-MBs here serve together as the T4 PNK, DNA polymerase, and endonuclease recognition probe, and
59 e phage encodes its own primase, DNA ligase, DNA polymerase, and enzymes necessary to synthesize and
60 lowed by the iterative binding of nucleases, DNA polymerases, and the XRCC4-DNA ligase IV (X4-LIV) co
61 A helicase, five domains of RNA primase, two DNA polymerases, and two thioredoxin (processivity facto
62 oside triphosphates were good substrates for DNA polymerases applicable in primer extension or PCR sy
67 the genome, whereas FdUTP is incorporated by DNA polymerases as 5-FU in the genome; however, it remai
69 itive [insertion site c in the gene encoding DNA polymerase B (polB-c)] and intein-negative cells and
71 eps during nucleotide incorporation by human DNA polymerase beta (hPolbeta) and provide a structural
73 Here, we have solved structures of human DNA polymerase beta (hPolbeta), in complex with single-n
74 of 8-oxoguanine (8-oxodG) in TNR sequences, DNA polymerase beta (POL beta) can incorporate 8-oxodGMP
75 se excision repair (BER), and in vertebrates DNA polymerase beta (pol beta) provides gap filling and
80 cleosome core are preferentially repaired by DNA polymerase beta and there is a significant reduction
81 n NCPs decreases the gap-filling activity of DNA polymerase beta near the dyad center, with H3K14Ac e
82 alent metal ions are essential components of DNA polymerases both for catalysis of the nucleotidyl tr
84 nts are limited to targeting the herpesvirus DNA polymerases, but with emerging viral resistance and
92 lular DNA replication factors and DNA repair DNA polymerases colocalize within centers of viral DNA r
93 o packaging viral pregenomic RNA (pgRNA) and DNA polymerase complex into nucleocapsids for reverse tr
94 rstanding of the structure and regulation of DNA polymerase complexes that mediate TLS and describe h
95 on probe derived from an aptamer specific to DNA polymerase containing the overhang sequence and the
99 ouble mutant allele, which causes defects in DNA polymerase delta (Pol delta) proofreading (pol3-01)
100 telomere damage to establish predominance of DNA polymerase delta (Pol delta) through its POLD3 subun
101 iscontinuous strand that takes place in both DNA polymerase delta (Pol delta)- and DNA polymerase (Po
102 on with three essential replication enzymes: DNA polymerase delta (POLD1), DNA primase (PRIM1), and m
104 s arrest is not due to 5-FU lesions blocking DNA polymerase delta but instead depends, in part, on th
107 the Bloom syndrome helicase (BLM) stimulates DNA polymerase delta progression across telomeric G-rich
108 the processivity or proofreading activity of DNA polymerase delta shortened hetDNA length or reduced
112 tations in the POLD1 and POLE genes encoding DNA polymerases delta (Poldelta) and varepsilon (Polvare
114 s with somatic mutations in two of the major DNA polymerases, delta and epsilon, that replicate the g
115 tion depends on the proofreading activity of DNA polymerase-delta, although the repair proteins Msh2,
118 are similar, individual trajectories of both DNA polymerases display stochastically switchable rates
119 tions during DNA replication, with different DNA polymerases displaying different ratios of correct o
120 hat the main pathway for error correction is DNA polymerase dissociation-mediated DNA transfer, follo
121 ynthesis does not occur in a fully assembled DNA polymerase-DNA-deoxynucleoside triphosphate complex
123 d histidinol phosphatase (PHP) domain in the DNA polymerase DnaE1 is essential for mycobacterial high
126 ir recognition proteins with the replicative DNA polymerases during DNA replication has suggested tha
127 erance of evidence supports a model in which DNA polymerase epsilon (Pol epsilon) carries out the bul
129 es during DNA replication has suggested that DNA polymerase epsilon (Pol epsilon) may also play a rol
132 rom this individual identified a mutation in DNA polymerase epsilon (POLE) that associated with an ul
134 Additionally, maximal rates only occur when DNA polymerase epsilon catalyzes leading-strand synthesi
137 nerations has provided new insights into how DNA polymerase errors sculpt genetic variation and drive
140 and Rad3-related (ATR) kinase or translesion DNA polymerase eta (i.e. key proteins that promote the c
142 two non-classical DNA polymerases, Rev1 and DNA polymerase eta, have two architectures: PCNA tool be
143 /MM simulations on a specific Pol, the human DNA polymerase-eta, an enzyme involved in repairing dama
145 ted in nucleosome core DNA showed a distinct DNA polymerase extension profile in cell-free extracts t
146 studies establish the mechanistic basis for DNA polymerase fidelity during reverse transcription and
147 Pol as a mitochondrial translesion synthesis DNA polymerase for oxidative DNA damage; however, we sho
151 endent DNA primase and translesion synthesis DNA polymerase found in the nucleus and mitochondria.
154 ongly mutagenic in genetic backgrounds where DNA polymerase function or MMR activity is partially com
155 e establish that leading- and lagging-strand DNA polymerases function independently within a single r
156 ed purified mtDNA replication proteins, i.e. DNA polymerase gamma holoenzyme, the mitochondrial singl
164 The mechanism of nucleotide incorporation by DNA polymerases has been extensively studied structurall
168 pha, telomerase, and the mitochondrial human DNA polymerase (hpol) gamma have been shown to tolerate
169 ition, hpol eta, as well as another Y-family DNA polymerase, hpol kappa, accommodates RNA as one of t
171 se crystallography, we evaluated how a model DNA polymerase, human polymerase beta, accommodates 8-ox
172 ditionally, Cu(II) chelated PyED outcompetes DNA polymerase I to successfully inhibit template strand
175 ymerase X (AsfvPolX) is the most distinctive DNA polymerase identified to date; it lacks two DNA-bind
176 There is a controversy as to whether or not DNA polymerase III holoenzyme (Pol III HE) contains gamm
180 tudy, we evaluated the impact of varying the DNA polymerase in chamber-based dPCR for both pure and i
184 he roles of individual translesion synthesis DNA polymerases in bypassing these lesions, and suggeste
185 Rev1 is unique among translesion synthesis DNA polymerases in employing a protein-template-directed
187 that there is no difference among the tested DNA polymerases in terms of accuracy of absolute quantif
188 is fully biocompatible; it is replicated by DNA polymerases in vitro and encodes a functional iLOV p
190 for oligonucleotide preparation by standard DNA polymerases, including Hemo KlenTaq, Vent, and Deep
192 s to integrate the emerging literature about DNA polymerase involvement during HR with the unique asp
196 catalytic subunit of the eukaryotic B-family DNA polymerases is essential for the formation of active
197 DNA elimination is a surprising function for DNA polymerase, it could provide a robust nexus for nucl
198 yl-dGTP was equal to dGTP as a substrate for DNA polymerase kappa (pol kappa), but was a poor substra
201 ive 8-oxo-dG:dA mispairs are removed through DNA polymerase lambda (Pol lambda)-dependent MUTYH-initi
202 ribonucleotides, which can be misinserted by DNA polymerases, leading to the most abundant DNA lesion
208 ration very effectively, the Family X member DNA polymerase mu (Pol mu) incorporates rNTPs almost as
209 -PKcs and Artemis for trimming the DNA ends; DNA polymerase mu and lambda to add nucleotides; and the
211 n fidelity relies on the concerted action of DNA polymerase nucleotide selectivity, proofreading acti
212 , here simplified as the contribution of the DNA polymerase (nucleotide selectivity and proofreading)
213 ese aberrant CMG complexes interact with the DNA polymerases on human chromatin, these complexes are
214 the regulation of chromosomal proteins like DNA polymerases or kinetochore kinases, are demonstratin
216 llow the exchange of the E. coli replicative DNA polymerase Pol IIIcore with the translesion polymera
217 and lagging strands by the three replicative DNA polymerases Pol alpha, Pol delta, and Pol epsilon; a
218 n both DNA polymerase delta (Pol delta)- and DNA polymerase (Pol )-dependent MMR reactions is suppres
223 down-regulation of oxidative stress response DNA polymerase (Pol) lambda caused by hyperactive HUWE1
224 ts biological function in genome maintenance.DNA polymerase (pol) mu functions in DNA double-strand b
228 ve DNA helicase, MCM, and the leading-strand DNA polymerase, Pol epsilon, move beyond the site of DNA
229 ryotic genome is primarily replicated by two DNA polymerases, Pol epsilon and Pol delta, that functio
231 To quantitatively image how the replicative DNA polymerase PolC functions in B. subtilis, we applied
233 he free energy source enabling high-fidelity DNA polymerases (pols) to favor incorporation of correct
235 DNA replication factors and major DNA repair DNA polymerases (polymerase eta [Pol eta] and polymerase
237 4 phage gene product 45 (gp45, also known as DNA polymerase processivity factor or sliding clamp) obt
238 ve site magnesium ion was identified in some DNA polymerase product crystallographic structures, but
239 than genes transcribed codirectionally with DNA polymerase progression due to conflicts between tran
241 missing for all naturally occurring archaeal DNA polymerases, provides a framework for engineering ne
242 trong D-stereoselectivity exhibited by human DNA polymerases relative to viral reverse transcriptases
243 translesion DNA synthesis (TLS), specialized DNA polymerases replicate the damaged DNA, allowing stri
244 s such as pol delta and the bacteriophage T4 DNA polymerase replicating 8-oxo-G in an error-prone man
247 nuclear antigen (PCNA) and two non-classical DNA polymerases, Rev1 and DNA polymerase eta, have two a
249 Accurate and complete quantification of a DNA polymerase's error spectrum is challenging because e
250 ication assays in vitro with a high-fidelity DNA polymerase, Saccharomyces cerevisiae polymerase (pol
251 sly reported the evolution of a thermostable DNA polymerase, SFM4-3, that more efficiently accepts su
254 These results therefore suggest that whereas DNA polymerase stalling at DNA lesions activates ATR to
256 tly been explored structurally and all three DNA polymerases studied to date have demonstrated unique
260 eta) is a low fidelity translesion synthesis DNA polymerase that rescues damage-stalled replication b
261 locks, cells utilize specialized translesion DNA polymerases that are intrinsically error prone and a
262 nstream of the lesion or recruit specialized DNA polymerases that can bypass the lesion via translesi
264 strand displacement and primer extension by DNA polymerases that resulted in premature chain termina
265 s, forming the CMG helicase, the Pol epsilon DNA polymerase, the RFC clamp loader, the PCNA sliding c
266 in abundance, and blocks primer extension by DNA polymerase, thereby demonstrating the functional sig
270 6) demonstrate a critical role for mammalian DNA polymerase theta in the rejoining of DNA ends that a
272 s have been made to improve the proofreading DNA polymerases, they are more susceptible to be failed
273 Here, we designed and covalently coupled a DNA polymerase to an alpha-hemolysin (alphaHL) heptamer
276 rporated adjacent to the nicking site with a DNA polymerase to label the guide RNA-determined target
277 , we evaluate the ability of a high-fidelity DNA polymerase to perform TLS with 8-oxo-guanine (8-oxo-
280 nslesion synthesis (TLS) employs specialized DNA polymerases to bypass replication fork stalling lesi
281 sphate (dNTP/rNTP) ratios, by the ability of DNA polymerases to discriminate against ribonucleotides,
282 the ability of high-fidelity and specialized DNA polymerases to incorporate natural and modified nucl
283 lesion DNA synthesis (TLS) is the ability of DNA polymerases to incorporate nucleotides opposite and
284 is (TLS) during S-phase uses specialized TLS DNA polymerases to replicate a DNA lesion, allowing stri
285 tes TLS by promoting recruitment of Y-family DNA polymerases to sites of DNA-damage-induced replicati
287 phosphates dA(SR)TP were good substrates for DNA polymerases useful in the enzymatic synthesis of bas
289 where individual translesion synthesis (TLS) DNA polymerases were depleted by the CRISPR/Cas9 genome
291 erase epsilon (Pol epsilon) is a replicative DNA polymerase with an associated 3'-5' exonuclease acti
292 This is the first crystal structure of a DNA polymerase with an incoming rNTP opposite a DNA lesi
293 All four derivatives are good substrates for DNA polymerase, with Km values averaging 13-fold higher
296 polymerase beta (Pol beta), a member of the DNA polymerase X family that is involved in base excisio
297 cts promote the participation of error-prone DNA polymerase zeta (Polzeta) in replication of undamage
300 , the gene encoding the catalytic subunit of DNA polymerase zeta involved in translesional synthesis,
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