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1 3P) predicted to affect the highly conserved DNA binding domain.
2 tivity but requires residues in the receptor DNA binding domain.
3 denosine (G > A) mutation in the mouse MeCP2 DNA binding domain.
4 omain, a central AAA domain and a C-terminal DNA binding domain.
5 of the same sequence in FOXO3 containing the DNA binding domain.
6 ty to activate transcription when fused to a DNA binding domain.
7 al threonine residue in ATF6 upstream of its DNA binding domain.
8 lack either the canonical Asp residue or the DNA binding domain.
9 ation of specific lysine residues in the p53 DNA binding domain.
10 is at a highly conserved residue within the DNA binding domain.
11 y a central conserved region overlapping the DNA binding domain.
12 hich differs by a single arginine within the DNA binding domain.
13 the C-terminus, i.e. juxtaposed to the VirG DNA binding domain.
14 ting gene expression through their conserved DNA binding domain.
15 n was recognized as a new class of conserved DNA-binding domain.
16 homodimer as both a monomer and dimer of the DNA-binding domain.
17 erential activation to the heterologous GAL4 DNA-binding domain.
18 is an atypical nuclear receptor that lacks a DNA-binding domain.
19 utations are missense and are located in the DNA-binding domain.
20 rg399Cys, reside in the highly conserved ETS DNA-binding domain.
21 HOP2, which contains a typical winged helix DNA-binding domain.
22 on and transactivation domains but lacks the DNA-binding domain.
23 ctly phosphorylates YY1 at serine 365 in the DNA-binding domain.
24 etitive movements, which is modulated by the DNA-binding domain.
25 r high sequence conservation within the GATA DNA-binding domain.
26 e domains: an R domain, an AAA+ domain and a DNA-binding domain.
27 KstR show variability in the position of the DNA-binding domain.
28 fectors (TALEs) contain modular programmable DNA binding domains.
29 crystallography studies on the ARF1 and ARF5 DNA binding domains.
30 gnition sequence, one in each of its two AP2 DNA binding domains.
31 predictions and the addition of non-specific DNA binding domains.
32 he N-terminal oligomerization and C-terminal DNA binding domains.
33 n at least three RPA-encoded single-stranded DNA binding domains.
34 rited from the structural analogies of their DNA-binding domains.
35 and dynamics of site discrimination by their DNA-binding domains.
36 -ZFs) comprise the largest class of metazoan DNA-binding domains.
37 binding of target metals to the activity of DNA-binding domains.
38 ed nucleases designed with sequence-specific DNA-binding domains.
39 A through a recognition alpha-helix in their DNA-binding domains.
40 cooperativity between the UHRF1 histone- and DNA-binding domains.
41 es, as we show that acetylation of an ApiAP2 DNA-binding domain ablates its DNA-binding propensity.
43 rectly, mainly through its beta-strand rich, DNA-binding domain (AML-(1-175)), with the assistance of
45 re that a folding intermediate of AML1-ETO's DNA-binding domain (AML1-175) forms a stable complex wit
46 ortholog, provided that it retains an active DNA binding domain and an intact lysine residue at posit
47 1-R NB-LRR protein carries a C-terminal WRKY DNA binding domain and forms a receptor complex with RPS
48 gene, named panish, encodes a cysteine-clamp DNA binding domain and operates through a different mech
49 onal interaction of the linker both with the DNA binding domain and with the SH2 domain, and (ii) the
50 ription factor families contain very similar DNA binding domains and hence have the potential to bind
51 no acid subunits, folding into an N-terminal DNA-binding domain and a C-terminal dimerization domain.
52 ealed a bipartite structure with a separable DNA-binding domain and a non-specific cleavage domain).
53 ce-dependent effects do not rely on the Chd1 DNA-binding domain and are not due to differences in nuc
54 th suppression depends on the CHES1 forkhead DNA-binding domain and correlates with the nuclear local
55 ces conformational changes in RAG-1 within a DNA-binding domain and in the ZnH2 domain, which acts as
56 Whereas most mutations in p53 occur in the DNA-binding domain and lead to its functional inactivati
57 rototype foamy virus featuring an additional DNA-binding domain and longer interdomain linkers, the a
58 es a conserved high-mobility group (HMG) box DNA-binding domain and poorly conserved regions outside
59 ational changes link the C terminus with the DNA-binding domain and provide a biophysical rationale f
60 the linker domain of STAT1 that connect the DNA-binding domain and SH2 domain can prevent transcript
61 d that missense mutations in the zinc-finger DNA-binding domain and the putative ligand-binding domai
62 zation helices in the C-terminal domain, the DNA-binding domains and a consensus DNA-binding site of
63 obabilistic framework that not only exploits DNA-binding domains and specificities, but also integrat
64 with all isoforms sharing the same HDAC and DNA-binding domains and the long isoforms containing a u
65 mportant feature of the database is that all DNA-binding domains and their binding sites are fully an
66 nges the relative spatial disposition of the DNA-binding domains and thereby disrupt the protein-DNA
67 rectly regulate the function of the adjacent DNA binding domain, and this interaction is further modu
68 es of CarD: the RNAP interaction domain, the DNA-binding domain, and a conserved tryptophan residue.
69 ered within the portion of REST encoding the DNA-binding domain, and functional analyses showed that
70 sequence showed no relationship to any known DNA-binding domain, and the basis for their ability to r
71 apicomplexa-specific proteins containing AP2 DNA-binding domains (ApiAP2s) was identified in malaria
72 rators, ORE1, ORX1, ORA1, and ORR3, the AraR-DNA binding domain (AraR-DBD) as well as full-length Ara
73 yet are considered undruggable because their DNA binding domains are composed of two extended alpha h
74 sed to Cys2-His2 zinc-finger or TAL effector DNA-binding domains are a class of reagents capable of a
75 presented here revealed that the Rgg protein DNA-binding domains are covalently linked across their d
78 s AldR (Rv2779c) showing that the N-terminal DNA-binding domains are swapped, forming a dimer, and fo
79 discrimination by ETS proteins because their DNA-binding domains are the most divergent in sequence,
80 mammalian proteins sharing nearly identical DNA binding domains, are thought to function in a mutual
83 isoform, TEAD4-S, which lacks an N-terminal DNA-binding domain, but maintains YAP interaction domain
84 with the DNA via a relatively novel type of DNA-binding domain, called the LytTR domain, which mainl
86 th an ETS domain, such as ETV6, whose single DNA-binding domain cannot contact both source and destin
87 n identified two domains, one a winged helix DNA-binding domain common for transcription factors, and
89 tivity, only DmSNAP190 possesses a canonical DNA binding domain consisting of 4.5 tandem Myb repeats
91 f is a gene for a ubiquitously expressed Ets DNA-binding domain-containing transcriptional repressor.
92 This function is executed by the C-terminal DNA binding domain (CTD) which binds single-stranded (ss
94 ere we present two crystal structures of the DNA binding domain (DBD) of the yeast XPA homolog Rad14
96 ity, ability to restore zinc to purified p53 DNA binding domain (DBD), and ability to restore site-sp
97 , which contains a proline-rich region and a DNA binding domain (DBD), is auto-cleaved from the ER me
99 ntuitively, high-affinity DNA binding of RPA DNA-binding domain (DBD) A and DBD-B near the fork junct
100 pecific motifs on DNA (C/TAAACA) through its DNA-binding domain (DBD) and activates proliferation- an
101 lved the X-ray crystal structure of an EBNA1 DNA-binding domain (DBD) and discovered a novel hexameri
102 homology 2 domain (SH2), linker domain (LD), DNA-binding domain (DBD) and the coiled-coil domain.
103 f this protein; a number of mutations in the DNA-binding domain (DBD) are associated with XP disease.
104 The RARbeta ligand-binding domain (LBD) and DNA-binding domain (DBD) are physically connected to fos
105 alpha (RXRalpha), and phosphorylation of the DNA-binding domain (DBD) at Thr-38 in CAR regulates this
106 eport the crystal structure of the KSHV LANA DNA-binding domain (DBD) in complex with its high-affini
107 property of the glucocorticoid receptor (GR) DNA-binding domain (DBD) not shared by other members of
108 rofiles reveal that the direct fusion of the DNA-binding domain (DBD) of Fkh1 to Dbf4 restores the Fk
111 ich motifs located both in the AD and in the DNA-binding domain (DBD) of the related ETS factor ETV4
119 updated the structural annotation of the TF DNA binding domains (DBDs) following a published hierarc
121 s) operate by the combined activity of their DNA-binding domains (DBDs) and effector domains (EDs) en
122 ivo Despite structural similarities in their DNA-binding domains (DBDs), LANA homologs from Kaposi sa
123 ts1 and Ets2, rather than differences in the DNA binding domains, determine whether the proteins are
125 e 614 in the second zinc finger module of AR-DNA binding domain diminished the effects of H(2)S on AR
126 lustered within the regions of TP53 encoding DNA-binding domains, essential for DNA contact and struc
127 chanisms that underlie the diversity of this DNA-binding domain exclusively in metazoans are, however
128 ding protein 2 (CHD2) mutant affected in its DNA-binding domain exhibits defective association with a
129 e dimerization domain overlaps with both the DNA binding domains, explaining how changes in the dimer
130 regions not only across TFs, but also across DNA-binding domain families with distinct structural fol
131 allows prediction of binding regions across DNA-binding domain families, it is TF agnostic and likel
133 ously described for other members of the XRE DNA-binding domain family, but the presence of an interm
137 the reduced affinity of the Mos1 transposase DNA-binding domain for the left IR as compared with the
138 gests that MibR, which contains a C-terminal DNA-binding domain found in the LuxR family of transcrip
141 results demonstrate the possibility of using DNA binding domains from bacterial response regulators a
142 reports on the ability of Rap1-heterologous DNA-binding domain fusion proteins to serve as chimeric
144 that a single amino acid substitution in the DNA-binding domain gave rise to the domestication of 'Mi
147 es in alpha-helix 7 and alpha-helix 8 of the DNA binding domain (helix-turn-helix) of RegA directly i
148 Distinct folds associated with predicted DNA-binding domains (HTH1 and HTH2) and phosphoenolpyruv
149 structure of the functionally essential ICP4 DNA binding domain in complex with a segment from its ow
157 that conditional inactivation of the Ikaros DNA-binding domain in early pre-B cells arrested their d
160 is inhibited by the B isoform of Fru, whose DNA binding domain interacts with a short region of an L
161 e p53 protein (both full-length and isolated DNA-binding domain) into amyloid-type fibrils in vitro.
164 SOX9 affinity is through NF-Y and that SOX9 DNA binding domain is not necessary for SOX9 affinity to
167 ragment, and that the region adjacent to the DNA-binding domain is pivotal to its homo-trimerization.
168 ation domains, amide exchange throughout the DNA-binding domains is decreased as if the entire domain
169 ID4, a transcriptional regulator lacking a DNA binding domain, is highly up-regulated in CEACAM1-tr
170 , whose members share structurally conserved DNA-binding domains, is variably sensitive to methylatio
172 dge distant sites on a DNA molecule with the DNA-binding domains located at each end of its strut-lik
174 S3, a MYB transcription factor with a single DNA-binding domain, mediates sugar signaling in rice.
176 r, in cells stably expressing a PR-A or PR-B DNA-binding domain mutant (PRmDBD), P4-mediated transrep
177 ifferent AP-1 consensus sequences, GR and MR DNA-binding domain mutants, and siRNA knockdown or overe
179 males or heterozygous males with an ERalpha DNA-binding domain mutation knocked in (WT/KI) to produc
183 truncated RgfA protein lacks the C-terminal DNA binding domain necessary for promoter binding and ge
184 ption factors, which share the conserved Ets DNA-binding domain, number nearly 30 members in humans a
189 tion assay identified point mutations in the DNA binding domain of FOXM1 that inhibit binding to a FK
197 Fusion of the enzyme to a site-specific DNA binding domain of transcription activator-like effec
198 d glutamic acid residue located in the basic DNA binding domain of TWIST1, in two subjects with front
199 ccumulated results strongly suggest that the DNA binding domains of both proteins interact to facilit
201 r, confirmed that it binds to the N-terminal DNA-binding domain of AbrB, and have provided an initial
202 t occurred some 500 million years ago in the DNA-binding domain of an ancient steroid hormone recepto
207 ional structure of the DNA-binding site, the DNA-binding domain of GR and the quaternary structure of
208 status of the Lys 80 residue located in the DNA-binding domain of HSF1 as a critical factor in modul
214 the allosteric interaction of MDM2 with the DNA-binding domain of p53; and (iv) it stimulates a nove
215 ough the NTR is generally considered the key DNA-binding domain of PARP-2, we report here that all th
217 ions affecting the coiled-coil domain or the DNA-binding domain of signal transducer and activator of
222 demonstrated that replacement of zinc in the DNA-binding domain of the estrogen receptor (ER) with co
224 ze a new unlooped state in which the unbound DNA-binding domain of the LacI protein interacts nonspec
226 poptosis by binding to the sequence-specific DNA-binding domain of the tumor suppressor protein and p
227 ription factors characterized by a conserved DNA-binding domain of three zinc fingers and a variable
231 IP-CoA induces conformational changes of the DNA-binding domains of the dimer that preclude their pro
235 he mechanisms by which missense mutations in DNA-binding domains of transcription factors can lead to
236 investigated the response of the zinc finger DNA-binding domains of transcription factors early growt
237 l class of genetic tool based on the modular DNA-binding domains of Xanthomonas TAL proteins, which e
240 ntly augmented and that its highly conserved DNA binding domain or the human homolog PC4 is sufficien
241 m that is affected by either mutation in the DNA-binding domain or dysregulation by overexpression of
243 3, alpha-Synuclein, N-terminal MDM2, and p53 DNA binding domain) or denatured due to solvent conditio
244 al activity can be tuned by mutations in its DNA-binding domain, or silenced by Gal80 when fused to t
245 t in FOXE3 with an altered amino acid in the DNA-binding domain (p.Asp153His) that segregated with di
246 tochrome c, the tumor suppressor protein p53 DNA binding domain (p53 DBD), and the N-terminus of the
247 Here we show that by fusing a programmable DNA-binding domain (pDBD) to Cas9 and attenuating Cas9's
249 C-binding factor (CTCF) is an 11 zinc finger DNA-binding domain protein that regulates gene expressio
250 ealed that Redbeta consists of an N-terminal DNA binding domain, residues 1-177, and a flexible C-ter
251 C-terminal region, which contains a putative DNA-binding domain, selectively senses double-stranded D
252 A and Fur as case examples, we also show how DNA-binding domain sequence similarity can yield confoun
254 n with transcription activator-like effector DNA binding domains significantly enhances targeted modi
255 , an AtDDF2-specific substitution within the DNA-binding domain significantly reduces binding affinit
256 ly, we predict motifs for many TFs that have DNA-binding domains similar to those already characteriz
257 that the Rap1 C terminus interacts with the DNA-binding domain, suggesting a complex network of inte
258 nt line harboring a point mutation in the GR DNA-binding domain, suggesting a nontranscriptional rout
259 odular arrangement for PriA in which several DNA-binding domains surround its helicase core in a mann
260 tive TF genes previously predicted using the DNA-binding domain TF database, and examine their in vit
261 aracterized by the presence of an N-terminal DNA binding domain that functions in transcriptional reg
262 by artificial fusion of Mediator subunits to DNA binding domains that bind to their promoters has bee
263 rated knockin mice with a mutation in the TR DNA-binding domain that abrogates binding to DNA and lea
264 each other and demonstrate a position of the DNA-binding domain that is unfavorable for DNA binding.
265 n its dimerization with MAX, which creates a DNA-binding domain that recognizes specific sequences in
266 ween the LOV and basic region leucine zipper DNA-binding domain that together with LOV dimerization r
267 oduction of a fragment within its N-terminal DNA-binding domain (the A-box) that signals through the
268 polymerase identified to date; it lacks two DNA-binding domains (the thumb domain and 8-KD domain) c
269 ription factor, Z3EV (a fusion of the Zif268 DNA binding domain, the ligand binding domain of the hum
272 that, despite deep sequence conservation in DNA-binding domains, the functional requirement for thes
273 a way that when DNA binds to the N-terminal DNA-binding domains, the nuclear localization signal bec
276 chers, ranging from evolutionary analysis of DNA-binding domains to predictive function modeling.
278 roperties, IL-10-based modeling predicts two DNA-binding domains, two amphipathic helices, and an in-
280 imensional structure of the highly conserved DNA-binding domain using solution NMR spectroscopy, the
281 the intrinsic specificities of the AR and GR DNA-binding domains using a refined version of SELEX-seq
284 targeting strategy: a Dlg4/PSD95 zinc finger DNA-binding domain was engineered and fused to effector
288 ly controlled by two regulatory domains: the DNA-binding domain, which interferes with sliding when i
290 cific interactions between the oncoprotein's DNA-binding domain, which may be targeted for therapeuti
291 pendent motions of Omega-loops and PPARgamma-DNA binding domain with contacts susceptible to conforma
292 This shows that interaction of the FOXM1 DNA binding domain with target DNA is essential for recr
293 ed C-terminal linker (IDL) that connects the DNA binding domain with the 9 amino acid C-terminal acid
294 n factor directing reprogramming, contains a DNA binding domain with three consecutive C2H2 zinc fing
295 nd requires substantial reorientation of the DNA-binding domain with respect to the ATPase domains.
298 producing a p.Arg418Gly substitution in the DNA-binding domain, with alternative splicing and exon s
299 mmetric dynamics are illustrated in the four DNA-binding domains, with loop L1 switching from inward
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