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1 protein) and a response regulator (usually a DNA binding protein).
2 A sliding clamp, and the RPA single-stranded DNA binding protein.
3 cation of RADX as an RPA-like, single-strand DNA binding protein.
4 ble to any type of yeast surface expressible DNA-binding protein.
5 c helix-loop-helix leucine zipper (bHLH-Zip) DNA-binding protein.
6 egulators (RfpB and RfpC), one of which is a DNA-binding protein.
7 that resembles a baculovirus single-stranded-DNA-binding protein.
8 g activity for disease-relevant proteins and DNA binding proteins.
9 ntially modulate the activities of unrelated DNA binding proteins.
10 ine deacetylases are selective regulators of DNA binding proteins.
11 ; CbpA lacks motifs found in other bacterial DNA binding proteins.
12 DNA-protein interactions for a wide range of DNA binding proteins.
13 A occupied by tandem arrays of high-affinity DNA binding proteins.
14 ssed by its interaction with single-stranded DNA binding proteins.
15 A (ssDNA) and interacting with several other DNA binding proteins.
16 ics on DNA in the presence of multiple other DNA binding proteins.
17 erization of transcription factors and other DNA-binding proteins.
18 ocessing of such modifications by regulatory DNA-binding proteins.
19 specific orientation are essential tasks for DNA-binding proteins.
20 ng at cognate sites may be common to various DNA-binding proteins.
21 target searches conducted by many different DNA-binding proteins.
22 despite being unrelated to any characterized DNA-binding proteins.
23 cificity for a group of structurally related DNA-binding proteins.
24 ncept that might be applied to inhibition of DNA-binding proteins.
25 direct transfer" reactions studied for other DNA-binding proteins.
26 rform accurate high-throughput prediction of DNA-binding proteins.
27 ISPR epitope tagging ChIP-seq (CETCh-seq) of DNA-binding proteins.
28 00 domain can be fused to other programmable DNA-binding proteins.
29 nd thermodynamically balanced engineering of DNA-binding proteins.
30 evelop a plant specific model for predicting DNA-binding proteins.
31 ty in patterning, notably in the behavior of DNA-binding proteins.
32 e researchers to use this method to identify DNA-binding proteins.
33 acterized demonstrating that Ml proteins are DNA-binding proteins.
34 oid in a way similar to exploration by other DNA-binding proteins.
35 ther indicated that CUL4A/B, damage-specific DNA binding protein 1 (DDB1), and cereblon (CRBN) appear
36 ) and uniform ripening (u) encode UV-DAMAGED DNA BINDING PROTEIN 1 (DDB1), DE-ETIOLATED 1 (DET1) and
37 o-SMAD1/5 and the expression of inhibitor of DNA binding protein 1 (ID1) were upregulated in HCV-infe
40 the RHIM-containing adaptor protein ZBP1 (Z-DNA binding protein 1; also known as DAI or DLM1) from a
42 The chromatin remodeler chomodomain helicase DNA-binding protein 1 (Chd1) promotes an elevated transc
46 dapter-inducing interferon-beta (TRIF) and Z-DNA-binding protein 1 (ZBP1)/DNA-dependent activator of
47 ar distribution, and a chromodomain helicase DNA binding protein 2 (CHD2) mutant affected in its DNA-
51 litated in the genomic context by UV-damaged DNA-binding protein 2 (DDB2), which is part of a multipr
52 Mutant or posttranslationally modified TAR DNA binding protein-32 (TDP-43) is also strongly associa
53 analysis revealed that chromodomain helicase DNA binding protein 4 (CHD4) is a potential downstream t
55 ow that Brg1 and CHD4 (chromodomain helicase DNA binding protein 4) coordinate to control target gene
59 interacted with CHD4 (chromodomain helicase DNA-binding protein 4), which is a part of the NuRD comp
66 oral lobar degeneration-transactive response DNA binding protein 43 (TDP-43), progressive supranuclea
67 t, ubiquitinated and hyperphosphorylated Tar DNA binding protein 43 (TDP-43, encoded by TARDBP) neuro
69 ocampal neurons, and reduced staining of TAR-DNA binding protein 43 in the nucleus, with concomitant
70 Aggregation of TDP-43 (transactive response DNA binding protein 43 kDa) is a hallmark of certain for
71 ith an approximately equal split between TAR DNA binding protein 43 proteinopathies and tauopathies.
75 however, identification of pathological TAR DNA-binding protein 43 (TDP-43) as the hallmark lesion i
76 as to determine whether the frequency of TAR DNA-binding protein 43 (TDP-43) deposition in Alzheimer'
77 icates a direct role of transactive-response DNA-binding protein 43 (TDP-43) in the pathology of ALS
79 The 43-kDa trans-activating response region DNA-binding protein 43 (TDP-43) is a product of a causat
82 giopathy), Lewy bodies, transactive response DNA-binding protein 43 (TDP-43) pathology, and hippocamp
85 compared to transactivation response element DNA-binding protein 43 (TDP-43) proteinopathy patients w
86 ng mutant superoxide dismutase-1 (SOD1), TAR DNA-binding protein 43 (TDP-43), and fused in sarcoma (F
89 Hyperphosphorylated transactive response DNA-binding protein 43 (TDP-43, encoded by TARDBP ) prot
90 ns, including fused in sarcoma (FUS) and TAR DNA-binding protein 43 (TDP-43, encoded by TARDBP), are
92 scores, presence of alpha-synuclein and TAR DNA-binding protein 43 aggregates, and additional vascul
94 ed in sarcoma (FUS) and transactive response DNA-binding protein 43 kDa (TDP-43), are responsible for
96 ) and Hsp104(A503V/N728A) rescue TDP-43 (TAR DNA-binding protein 43), FUS (fused in sarcoma), and alp
97 ontained phosphorylated transactive response DNA-binding protein 43, ubiquitin, microtubule-associate
100 Transfected CHD5 (chromodomain helicase DNA-binding protein 5) and NUT (nuclear protein in testi
101 s in the gene encoding chromodomain helicase DNA binding protein 7 (CHD7), which is an ATP-dependent
102 function mutations in chromodomain helicase DNA-binding protein 7 (CHD7(LOF)) and lysine (K) methylt
103 n demonstrate that the chromodomain helicase DNA-binding protein 7 (Chd7), frequently associated with
104 encoding ATP-dependent chromodomain helicase DNA-binding protein 7, in CHARGE syndrome lead to multip
105 tly, it was shown that chromodomain helicase DNA-binding protein-7 (CHD7) interacts with RUNX1 and su
106 runcating mutations of chromodomain helicase DNA-binding protein 8 (CHD8), and of many other genes wi
107 atin remodeling factor chromodomain helicase DNA-binding protein 8 (CHD8), and the DNA methyltransfer
108 we found that ATPases chromodomain helicase DNA-binding protein 9 (CHD9) and Brahma homologue (BRM,
111 nteracting with an ensemble of (multivalent) DNA-binding proteins able to switch between an "on" (bin
112 tibility, agt and Taf1 Both encode unrelated DNA-binding proteins, agt for an alkyl-cysteine-S-alkylt
113 y define the genome-wide binding profiles of DNA-binding proteins, allowing for a straightforward met
115 topoisomerase, a non-specific mitochondrial DNA binding protein and a type II restriction endonuclea
117 cterize the cell-to-cell transmission of TAR DNA-binding protein and alpha-synuclein, involved in amy
120 conclude that OsARID3 is an AT-rich specific DNA-binding protein and that it plays a major role in SA
121 be genetically encoded by binding sites for DNA-binding proteins and can also involve changes in chr
123 he acetyl-lysine occupancy of several ApiAP2 DNA-binding proteins and related transcriptional protein
124 romatin accessibility, nucleosome occupancy, DNA-binding proteins, and DNA methylation, primarily foc
126 The experimental methods used to identify DNA-binding proteins are expensive and time consuming an
130 terility, and strongly reinforce the role of DNA-binding proteins as a class of genes contributing to
131 n of translin (trsn), a highly conserved RNA/DNA binding protein, as essential for starvation-induced
132 ce screen and identify ZNF304, a zinc-finger DNA-binding protein, as the pivotal factor required for
133 ales, from sub-genic regions associated with DNA-binding proteins at the order of tens or hundreds of
134 and topology, and its competition with other DNA-binding proteins at the single-DNA-molecule level.
136 monstrated to target a shared substrate, the DNA binding protein BAF, elucidating a signaling pathway
137 t the role of intragenic DNA methylation and DNA binding protein BORIS in cancer-specific splicing an
139 hesis with the specificity of a programmable DNA-binding protein by using protein trans-splicing to l
140 (b) altered homeostasis of critical RNA- and DNA-binding proteins, (c) impaired cytoskeleton function
141 otential target site, which may be how other DNA binding proteins can steer selection of advantageous
142 he high-mobility group protein B1 (HMGB1), a DNA-binding protein capable of inducing secretion of TNF
143 In particular, mutants of the RNA-guided DNA binding protein Cas9 that have lost their DNA cleava
144 complex, incorporating the sequence-specific DNA-binding protein Cep3 together with regulatory subuni
145 sively assesses the influence on contacts of DNA-binding proteins, cis-regulatory elements and DNA co
146 ends on the concentration of the periplasmic DNA-binding protein ComE, indicating that ComE is direct
147 A) is a co-chaperone and nucleoid associated DNA binding protein conserved in most gamma-proteobacter
148 modifiers, chromatin remodelers, and methyl-DNA binding proteins contribute to neurodevelopmental de
150 ion of chromatin loops is mainly mediated by DNA-binding proteins (DBPs) that bind to the interacting
151 ificity and ease of targeting the RNA-guided DNA-binding protein dCas9 to any 20 bp user-defined DNA
152 Here, we report that the damage-specific DNA-binding protein DDB2 is critical for beta-catenin-me
155 excess heterogeneous DNA, sequence-specific DNA-binding proteins execute various translocation mecha
156 onstrated that Hop1 is a structure-selective DNA-binding protein exhibiting high affinity for the Hol
160 (TALE) proteins are a class of programmable DNA-binding proteins for which the fundamental mechanism
161 We report a novel design for a fluorescent, DNA-binding protein (FP-DBP) that completely 'paints' en
162 of stress and starvation, an NAP called Dps (DNA-binding protein from starved cells) becomes highly u
163 cterium Deinococcus radiodurans contains two DNA-binding proteins from starved cells (Dps): Dps1 (DR2
165 lification requires only the single-stranded DNA-binding protein gp32 from bacteriophage T4 and a str
166 tively-bound clusters of the single-stranded DNA binding protein (gp32) of the T4 DNA replication com
169 Recent advances in the field of programmable DNA-binding proteins have led to the development of faci
171 NA colocalized with the VACV single-stranded DNA binding protein I3 in multiple puncta throughout the
172 of filament formation by the single-stranded DNA binding protein ICP8 in the formation of prereplicat
175 tivator, which targets promoters via RBPJ, a DNA binding protein in the Notch signaling pathway.
176 e results reveal the role of single-stranded DNA binding proteins in controlling Exo1-catalyzed resec
177 ion followed by sequencing (ChIP-Seq) of 104 DNA binding proteins in embryonic stem cell (ESC) lines.
182 ow that dinoflagellate nuclei have recruited DNA-binding proteins in three distinct evolutionary wave
183 or designing RNAs that competitively inhibit DNA binding proteins including transcription factors.
184 cleosomes occupy DNA targets for a subset of DNA-binding proteins, including CCCTC-binding factor (CT
187 ctedly, a post-translational modification of DNA-binding proteins, initiating the cell response to si
189 hly conserved heterotrimeric single-stranded DNA-binding protein involved in DNA replication, recombi
190 ing yeast Rap1 is a specific double-stranded DNA-binding protein involved in repression and activatio
191 nge of DNA topoisomers at equilibrium with a DNA binding protein is separated into free and protein-b
192 Understanding the interactions of different DNA binding proteins is a crucial first step toward deci
194 The ribbon-helix-helix (RHH) superfamily of DNA-binding proteins is dispersed widely in procaryotes.
195 ork wherein a member of the DNABII family of DNA-binding proteins is positioned at the vertex of each
197 tingly, 5hmC colocalized with the methylated DNA binding protein MeCP2 and with the active chromatin
198 Once deposited, mCA is bound by the methyl-DNA-binding protein MECP2 and functions in a rheostat-li
200 l cells in a manner that is dependent on the DNA-binding protein MRE11 and the antiviral factor IRF1
202 oloenzyme, the mitochondrial single-stranded DNA binding protein mtSSB, the replicative helicase Twin
206 ral dementia (FTD) with transactive response DNA-binding protein of 43 kD (TDP-43)-positive inclusion
208 otemporal lobar degeneration (FTLD) with TAR DNA-binding protein of 43 kDa (TDP-43) pathology (FTLD-T
209 (WD repeat and high mobility group [HMG]-box DNA-binding protein), one of the genes that was upregula
211 nvolving nonstructural proteins, such as the DNA-binding protein P1 and the genome terminal protein (
213 starvation protein A (SspA) complex and the DNA-binding protein pathogenicity island gene regulator
218 In this paper, we present iDNAProt-ES, a DNA-binding protein prediction method that utilizes both
219 o form t-loops or complex with single-strand DNA binding proteins, raising the question of the mechan
220 ching has been reported or proposed for many DNA-binding proteins, raising the question of how widesp
221 ICD complex is recruited to chromatin by the DNA-binding protein Rbp-J in a Tead-independent fashion.
222 NA) screening, we identified single-stranded DNA binding protein replication protein A (RPA) as a reg
223 nted the accumulation of the single-stranded DNA binding protein replication protein A (RPA) on damag
224 ncoded nuclear antigen and sequence-specific DNA binding protein required for viral origin binding an
227 ast LTR retrotransposon Tf1 is guided by the DNA binding protein Sap1 and that the efficiency and loc
228 ssion yeast cells carrying a mutation in the DNA-binding protein Sap1 show defects in DNA replication
230 active phosphatase Eya1 cooperates with the DNA-binding protein Six1 to promote gene induction in re
232 consist of binding sites for many different DNA-binding proteins, some known and others unknown.
233 feasibility of CETCh-seq by tagging several DNA-binding proteins spanning a wide range of endogenous
239 otetrameric Escherichia coli single-stranded DNA binding protein (SSB) plays a central role in DNA re
240 ce of separation in DQAMmiR on single-strand DNA binding protein (SSB) whose native structure and bin
241 During DNA replication, the single-stranded DNA binding protein (SSB) wraps single-stranded DNA (ssD
242 ch revealed a novel mode for single-stranded DNA-binding protein (SSB)-DNA binding, in which SSB inte
243 so have higher levels of the single-stranded DNA-binding protein SSB1, which has a critical role in D
251 NA specificity, outside of extremely modular DNA binding proteins such as TAL effectors, has generall
252 y widespread footprints of sequence-specific DNA-binding proteins such as CTCF, which we validate in
253 covariance between histone modifications and DNA binding proteins, such as the relationship between t
254 applied to biological phenomena that involve DNA-binding proteins, such as DNA condensation with crys
256 racterization of an HRP conjugate with scCro DNA binding protein tag and its application for the dete
257 unique DNA sensing platform based on an HRP-DNA binding protein tag conjugate and a hybrid ssDNA-dsD
259 equence-specific double- and single-stranded DNA-binding proteins, Taz1 and Pot1, respectively, bridg
260 egeneration (FTLD) with transactive response DNA-binding protein (TDP) inclusions in 40.5%, FTLD-tau
261 poral lobar degeneration (FTLD) with longTAR DNA-binding protein (TDP)-43-positive neuropil threads a
262 l aggregation and mutation of the 43-kDa TAR DNA-binding protein (TDP-43) are strongly implicated in
265 cluding the telomeric repeat single-stranded DNA-binding protein Teb1 and its heterotrimer partners T
266 complex (TEB) with single-stranded telomere DNA-binding protein Teb1, paralogous to heterotrimeric r
273 ication of Combgap (Cg), a sequence-specific DNA-binding protein that is involved in recruitment of P
275 E STATEMENT CCCTC-binding factor (CTCF) is a DNA-binding protein that organizes nuclear chromatin top
276 PA over RPA (replication protein A), another DNA-binding protein that participates in the nucleotide
277 ication protein A (RPA) is a single-stranded DNA-binding protein that plays an essential role in DNA
280 a risk locus for schizophrenia and encodes a DNA-binding protein that regulates higher-order chromati
281 nesis, and SOX5 and SOX6 are closely related DNA-binding proteins that critically enhance its functio
285 temperature, encode closely related AP2/ERF DNA-binding proteins that recognize the C-repeat (CRT)/d
286 anscription factors is a conserved family of DNA-binding proteins that responds to a diverse set of c
287 be a general mechanism used by site-specific DNA-binding proteins to minimize time-consuming interrog
288 f genes, including the gene encoding the RNA/DNA-binding protein translocated in liposarcoma or fused
289 X1-SLX4 is negatively regulated by telomeric DNA-binding proteins TRF1 and TRF2 and is suppressed by
290 rts focus on affinity and specificity of the DNA-binding proteins, typically overlooking the kinetic
291 G colocalized with the viral single-stranded DNA binding protein UL57, but colocalization became less
292 show that in vivo delivery of an engineered DNA-binding protein uncoupled from the repressor domain
294 specifically measuring target site search by DNA-binding proteins via intersegmental translocation.
295 evertants, the thrR gene encoding a putative DNA-binding protein was inactivated, also resulting in c
296 unders of a new structural family of dimeric DNA-binding proteins with C-terminal, flexible, effector
299 -of-function mutations we engineered the ZF6-DNA-binding protein (ZF6-DB) that targets 20 base pairs
300 to various DNA-binding modules: full-length DNA binding proteins, zinc fingers (ZFs), transcription
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