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1 DNase 1 was given to assess the effects of extracellular
2 DNase 1, which disrupts NETs, accelerated wound healing
3 DNase Hi-C uses DNase I for chromatin fragmentation, lea
4 DNase I and Tn5 transposase assays require thousands to
5 DNase I hypersensitive sites (DHSs) are a hallmark of ch
6 DNase I hypersensitive sites (DHSs) provide important in
7 DNase I is a secreted enzyme whose function has been pre
8 DNase I is a useful biomarker.
9 DNase II digests DNA in endolysosomes.
10 single intracoronary infusion of 1 x 10(13) DNase-resistant particles of AAV1/SERCA2a or placebo.
11 00 constructs, corresponding to roughly 3500 DNase I hypersensitive (DHS) sites, into the mouse retin
21 own by caspase-3 cleavage, caspase-activated DNase levels, and terminal deoxynucleotidyl transferase-
23 binary complex functioned as a highly active DNase to destroy a large excess DNA substrate, which cou
32 ive trait loci (eQTLs) for AHI1 and DEXI and DNase hypersensitivity sites in FOXP3(+) regulatory T ce
35 pression quantitative trait loci (eQTLs) and DNase I sensitivity quantitative trait loci (dsQTLs) in
38 ree hypothetical protein-encoding genes, and DNase I footprint analysis identified the specific nucle
39 nce of NET-dissolving drugs like heparin and DNase I, already in clinical use, and recent development
40 nt downregulation of those encoding Hsf4 and DNase IIbeta, which are implicated in the denucleation p
42 ng DNA methylation, histone modification and DNase I hypersensitivity profiling as well as Hi-C to in
43 as positions of 4 histone modifications and DNase hypersensitive sites, Wilson et al reveal many mor
45 gel retardation, potassium permanganate and DNase I footprinting, cleavage reactions with protein co
46 protein of L. pneumophila has both RNase and DNase activities, with the RNase activity being more pro
47 have been reported, few combine ChIP-seq and DNase-seq data analysis and quality control in a unified
48 anscription factor binding from ChIP-seq and DNase-seq data, and scores variants by computing the cha
54 presents the most comprehensive ChIP-seq and DNase-seq related quality metric resource currently avai
55 derived from over 23,677 public ChIP-seq and DNase-seq samples (11,265 datasets) from eight literatur
56 g-based genomics assays such as ChIP-seq and DNase-seq, the epigenomic characterization of a cell typ
58 el on publicly available transcriptomics and DNase-seq data and assessed the predictive power of the
66 exploits information from H3K27ac signal at DNase I hypersensitive sites identified from published h
67 ly respond to RNA-associated ligands because DNase II-mediated degradation of self-DNA is required fo
71 le genomic sites mapped in 164 cell types by DNase-seq, and demonstrate greater predictive accuracy t
72 ultrasensitive strategy, called single-cell DNase sequencing (scDNase-seq) for detection of genome-w
74 of size-selected DNase I-treated chromatin (DNase-seq) allows high-resolution measurement of chromat
75 rivate disruptive mutations within fetal CNS DNase I hypersensitive sites (i.e., putative regulatory
79 ugh a combination of mammalian conservation, DNase hypersensitivity, and histone modification from EN
80 m reveals strong enhancer regions containing DNase I hypersensitive sites overlapping the rs874040 li
82 s that cannot be analyzed using conventional DNase I sequencing because of the requirement for millio
83 f ChIP-seq and chromatin accessibility data (DNase-seq and ATAC-seq) published before January 1, 2016
85 tors and those within frontal cortex-derived DNase I hypersensitivity sites are significantly enriche
86 ntibodies, brefeldin A, diphenyleneiodonium, DNase or blocking F(ab')2 fragments to CD16, CD18, CD32
87 e hundred thousand genomic loci that display DNase I hypersensitivity in one or more ENCODE cell line
91 4)-10(-17) M) complex between the Colicin E7 DNase (CE7) and its inhibitor, Immunity protein 7 (Im7).
92 hylogenetic conservation as well as elevated DNase I hypersensitivity (DHS) in ENCODE cell lines.
94 minant frameshift (fs) mutations that encode DNase-active but mislocalized proteins cause disease.
95 ntegrating conjugative element (ICE)-encoded DNase, which we name IdeA, is necessary and sufficient f
97 the current high-throughput sequencing era, DNase I has mainly been used to study genomic regions de
99 velopment is illustrated by direct evidence: DNase I added to tumor cells eliminates the structures a
100 ranscription factor footprints from existing DNase-seq data derived from central nervous system tissu
101 Treatment with CLI reduced extracellular DNase Sda1 and streptolysin O (SLO) activity in vivo, wh
103 he structure of RecJ, a 5' --> 3' DHH family DNase and other DHH family nanoRNases, Bacillus NrnA has
105 rimetric readout would make the lateral flow DNase I test strip a suitable platform for point-of-care
106 we used potassium permanganate footprinting, DNase I footprinting, and in vitro transcription from th
108 riants at the 20 eGFR loci were enriched for DNase I hypersensitivity sites (DHSs) in human kidney ce
109 27 k Illumina array, and with enrichment for DNase-I Hypersensitivity sites across the full range of
110 site annotation and motif identification for DNase-seq, analysis of nascent transcription from Global
111 with a DNA fragment including only its four DNase I hypersensitive sites (lacking the large spacer r
117 ility occurs primarily within narrow, highly DNase hypersensitive sites that frequently coincide with
121 alfa (recombinant human deoxyribonuclease I, DNase), demonstrating DNA degradation and improved NP pe
126 sing triple knockout (TKO) mice deficient in DNase II/IFNaR together with deficiency in either stimul
128 tify candidate noncoding driver mutations in DNase I hypersensitive sites in breast cancer and experi
129 le of a co-evolved substitution where Pro in DNase loop 4 occupies the volume vacated and removes the
132 me-widely using chromatin features including DNase I hypersensitivity, 11 histone modifications (HMs)
135 chromatin structure, resulting in increased DNase I sensitivity, the accumulation of DNA damage, and
139 ing CpG site methylation, CGIs, co-localized DNase I hypersensitive sites, transcription factor bindi
140 reveals that DUX4 binds two classes of loci: DNase accessible H3K27Ac-rich chromatin and inaccessible
142 while interactions involving actively marked DNase accessible elements are enriched both at short (<5
143 these elements have active chromatin marks, DNase hypersensitivity, and occupancy by multiple transc
145 e Illumina 450 k DNA methylation microarray, DNase hypersensitivity sequencing, single-cell ATAC sequ
147 de maps for 17 TFs, 3 histone modifications, DNase I hypersensitive sites, and high-resolution promot
151 characterization of the most highly mutated DNase I hypersensitive sites in breast cancer (using in
152 he high environmental sensitivity of natural DNase in anti-biofilm applications, DMAE exhibited a muc
154 NFAT and AP-1 which created thousands of new DNase I-hypersensitive sites (DHSs), enabling ETS-1 and
156 arget protein and the inhibitor, and a novel DNase protection assay measured chemical inhibition of p
157 s are responsible for most of the ability of DNase preparations to inhibit alum's adjuvant activity.
163 orms a comprehensive k-mer-based analysis of DNase footprints to determine any k-mer's potential for
166 se effectors, RhsA, belongs to the family of DNase enzymes, the activity of the other was not apparen
168 localize with, and maintain the intensity of DNase I hypersensitive sites genome wide, in resting but
169 ion of association tests, prior knowledge of DNase-I hypersensitivity sites or other relevant biologi
171 s-regulatory elements; therefore, mapping of DNase I hypersensitive sites (DHSs) enables the detectio
172 q) method that allows us to generate maps of DNase I-hypersensitive site (DHS) of mouse preimplantati
175 ity genes-those with a large total number of DNase-mapped enhancers across the lineage-differ archite
179 e, we use a recent comprehensive data set of DNase I sequencing-identified cis-regulatory binding sit
183 VM accurately predicts the impact of SNPs on DNase I sensitivity in their native genomic contexts and
184 Instead, ORC binds nonspecifically to open (DNase I-hypersensitive) regions containing active chroma
187 sequencing experiments (such as ChIP-seq or DNase-seq) and models the change in enhancer signature u
188 including at enhancers, promoters, and other DNase hypersensitive regions not marked with canonical h
189 t require genetically modified histones, our DNase-based approach is easily applied in any organism,
192 the experiments used commercially purchased DNase and showed that coinjection of these DNase prepara
193 CMV quantitative polymerase chain reaction (DNase-CMV-qPCR) was developed to differentiate free nake
194 systemic lupus erythematosus exhibit reduced DNase I activity, and patients with myocardial infarctio
195 1 and therefore endosomal TLRs, also require DNase II deficiency in both donor and host compartments,
199 ell technologies (e.g. single-cell ATAC-seq, DNase-seq or ChIP-seq) have made it possible to assay re
200 ly accumulating publicly available ChIP-seq, DNase-seq and ATAC-seq data are a valuable resource for
203 Using HTS data from a variety of ChIP-seq, DNase-seq, FAIRE-seq, and ATAC-seq experiments, we show
204 A-seq, nucleosome positioning for MNase-seq, DNase hypersensitive site mapping, site annotation and m
208 ility experiments such as DNaseI sequencing (DNase-seq) and Assay for Transposase Accessible Chromati
209 favorably with published DNaseI sequencing (DNase-seq) results and it requires less than 50 000 nucl
214 Like traditional Hi-C protocols, in situ DNase Hi-C requires that chromatin be chemically cross-l
216 ions induced expression and activity of SLO, DNase, and Streptococcus pyogenes cell envelope protease
217 Here we profile parental allele-specific DNase I hypersensitive sites in mouse zygotes and morula
218 ntify 76 genes with paternal allele-specific DNase I hypersensitive sites that are devoid of DNA meth
221 tiviral single guide RNA libraries to target DNase I hypersensitive sites surrounding a gene of inter
225 The crystal structure of B. thailandensis DNase II shows a dimeric quaternary structure which appe
226 that recombinant Burkholderia thailandensis DNase II is highly active at low pH in the absence of di
228 g studies have instead yielded evidence that DNase I plays a central role in newly defined dynamics o
232 Here, we reveal for the first time that DNase I can be used to precisely map the (translational)
235 hment folds from 1.36 to 3.1) as well as the DNase hypersensitive sites (1.58-2.42 fold), H3K4Me1 (1.
240 due to the extensive characterization of the DNase hypersensitivity sites, modification of chromatin,
241 cleosomal DNA; the oscillatory nature of the DNase I cleavage profile within nucleosomal DNA enables
242 s between receptor loading, lifetimes of the DNase I hypersensitivity sites (DHSs), long-range intera
243 Recent reports point to limitations of the DNase-based genomic footprinting approach and call into
244 changes in the structure and dynamics of the DNase-I loop, alterations in the structure of the H73 lo
245 g three chromatography steps, over which the DNase activity was largely separated from the dNTPase ac
246 d DNase and showed that coinjection of these DNase preparations with alum and Ag reduced the host's i
247 ond the need for guide-target pairing, this "DNase H" activity has no apparent sequence requirements,
248 il loci drive gene-expression changes though DNase-I hypersensitive sites (DHSs) near transcription s
249 nce and protected against ALI in mice; thus, DNase I may be a new potential adjuvant for ALI therapy.
250 on measurement of chromatin accessibility to DNase I cleavage, permitting identification of de novo a
252 were identified based on hypersensitivity to DNase I digestion and association with H3K4me3-modified
253 d cellular internalization and resistance to DNase I compared to free synthetic nucleic acids, they s
255 ce of nanoparticles were highly resistant to DNase I endonucleases, and degradation was carried out e
256 elements: short genomic regions sensitive to DNase digestion that are strongly bound by known insulat
257 P. aeruginosa biofilm formation similarly to DNase, suggesting interference with the pyocyanin-depend
258 ession (GTEx) data using distance from TSSs, DNase hypersensitivity sites, and six histone modificati
259 gical inflammation in the joint depends upon DNase II deficiency in both donor hematopoietic cells an
261 first documentation that plant pathogens use DNases to modulate their biofilm structure for systemic
262 at HRG modulates the contact system, we used DNase, RNase, and antisense oligonucleotides to characte
263 To identify cis-acting elements, we used DNase-seq and H3K4me1 and H3K27Ac ChIP-seq to map open a
266 atch, a new computational approach that uses DNase footprint data to estimate and visualize the effec
267 ed a recently developed Hi-C assay that uses DNase I for chromatin fragmentation to mouse F1 hybrid s
271 Genome-wide footprinting analysis using DNase-seq provides little evidence for TR footprints bot
273 s during hematopoietic differentiation using DNase-seq, histone mark ChIP-seq and RNA sequencing to m
274 s for over 50 years, the potential for using DNase I as a clinical tool to prevent or treat cancer re
276 with open chromatin regions identified using DNase I hypersensitivity assays, and are enriched in the
279 based on cuts in linker regions, we utilize DNase I cuts both outside and within nucleosomal DNA; th
283 vely parallel sequencing has enabled in vivo DNase I footprinting on a genomic scale, offering the po
288 ingle nucleotide resolution, coincident with DNase hypersensitive and ATAC-seq sites at a low sequenc
291 obust and recoverable artificial enzyme with DNase-like activity was obtained, which exhibited high c
297 romatin Model (SCM), which when trained with DNase-seq data for a cell type is capable of predicting
300 sputum, tobramycin NPs both with and without DNase functionalisation, exhibited anti-pseudomonal effe
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