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1 DSB repair occurs in the context of chromatin, and multi
2 DSB unwinding by AdnAB in vitro is stringently dependent
3 DSB-ddPCR demonstrates time-resolved, highly quantitativ
4 DSBs are continuously formed throughout interphase, are
5 DSBs elicit a cascade of events controlled by the ubiqui
7 Among over 100 novel proteins enriched at a DSB were the phosphatase Sit4, the RNA pol II degradatio
8 tand this, we targeted bacterial Ku (bKu), a DSB binding protein, to the mitochondria of rho+ cells w
15 water-soluble distyrylbenzene-bis-aldehyde (DSB-3), and provided strong discrimination against the p
18 tone modification, chromatin remodelling and DSB-repair via HRR; effectively phenocopying loss of TIP
19 ow that Cdc14 promotes spindle stability and DSB-SPB tethering during DNA repair, and imply that meta
20 ntly, increased cellular load of R-loops and DSBs, which are normalized on RNaseH1-mediated suppressi
22 le- and double-stranded DNA breaks (SSBs and DSBs), and single-stranded gaps can block progression of
23 n increases 53BP1 and RIF1 colocalization at DSBs, which inhibits BRCA1 recruitment, and sensitizes c
26 lly, PAXX promotes the accumulation of KU at DSBs, while XLF enhances LIG4 recruitment without affect
27 of TLC1 RNA depends on Cdc13 localization at DSBs and on the SUMO ligase Siz1, which is required for
29 deficiency reduces histone ubiquitination at DSBs, decreasing the recruitment of 53BP1, and decreases
30 terference influences the population-average DSB landscape but also demonstrate that locally inhibito
33 ein determinants of DSB hotspots - they bind DSB hotspots with high specificity and are required for
34 NA double-strand break (DSB) sites, blocking DSB repair, which led to DSB accumulation, DNA damage re
35 efore and after a double-stranded DNA break (DSB), to estimate the level of chromatin decompaction.
36 sive resection of a DNA double-strand break (DSB) by a multisubunit helicase-nuclease machine (e.g. R
37 ith repair of a defined double-strand break (DSB) by the synthesis-dependent strand-annealing (SDSA)
38 lating cessation of DNA double-strand break (DSB) formation following crossover designation, and ensu
42 ci, suggesting that DNA double-strand break (DSB) repair by homologous recombination (HR) was comprom
43 thway choice within DNA double-strand break (DSB) repair is a tightly regulated process to maintain g
45 mbination (HR) is a DNA double-strand break (DSB) repair pathway that protects the genome from chromo
46 HEJ) is the predominant double-strand break (DSB) repair pathway throughout the cell cycle and accoun
47 competition from other double-strand break (DSB) repair pathways, including non-homologous end-joini
48 pression of several DNA double-strand break (DSB) repair proteins and formation of repair complexes,
50 r-prone pathway for DNA double-strand break (DSB) repair, is implicated in genomic rearrangement and
51 mbination (HR)-mediated double-strand break (DSB) repair, which is mediated through its ability to me
52 he progerin-induced DNA double-strand break (DSB) sites, blocking DSB repair, which led to DSB accumu
53 mechanical processes of double-strand break (DSB)-repair, especially the auxiliary factor(s) that can
55 f contrast agent on DNA double-strand-break (DSB) formation in patients undergoing magnetic resonance
57 as been reported that double-stranded break (DSB)-induced small RNAs (diRNAs) are generated via the R
58 lyzes excision through double strand breaks (DSB) and the joining of newly excised transposon ends wi
59 ncluding 53BP1, to DNA double-strand breaks (DSB) and undergoes dynamic acetylation during DSB repair
61 ity in the form of DNA double strand breaks (DSB) in cancer cells that lack the tumor suppressor gene
63 NA lesions (OCDL), DNA double-strand breaks (DSB), apoptosis, and the local and systemic immune respo
65 digital PCR assay for double-strand breaks (DSB-ddPCR) to investigate the kinetics of Cas9-mediated
66 g of induced nuclear double-stranded breaks (DSB) but the resulting nuclear integrants are often imme
67 en species-induced DNA double-strand breaks (DSBs) and were modestly sensitive to poly-ADP-ribose pol
68 y chosen to repair DNA double-strand breaks (DSBs) are critically influenced by the nucleosome packag
72 bset of programmed DNA double-strand breaks (DSBs) are repaired as crossovers, with the remainder bec
74 9, which generates DNA double-strand breaks (DSBs) at target loci, is a powerful tool for editing gen
75 d in the repair of DNA double-strand breaks (DSBs) by homologous recombination (HR), the molecular me
77 g the formation of DNA double-strand breaks (DSBs) by the Spo11 endonuclease early in prophase I, at
78 ical evidence that DNA double-strand breaks (DSBs) can be directly generated by Top1 at sites of geno
79 pair efficiency of DNA double-strand breaks (DSBs) caused by exposure to gamma radiation across archa
81 etection and repair of double-strand breaks (DSBs) in DNA, although detail concerning how Kaposi's sa
85 In pre-B cells, DNA double-strand breaks (DSBs) induced at Igkappa loci by the Rag1/Rag2 (RAG) end
86 d genome stability.DNA double-strand breaks (DSBs) induced by topoisomerase II (TOP2) are rejoined by
87 lytic resection of DNA double-strand breaks (DSBs) is essential for both checkpoint activation and ho
95 helps recruit BRCA1 to double-strand breaks (DSBs) through the scaffold protein CCDC98 (Abraxas) and
96 End resection of DNA double-strand breaks (DSBs) to generate 3'-single-stranded DNA facilitates DSB
97 combination-initiating double-strand breaks (DSBs) via a feedback loop triggered by crossover designa
108 RAD51 loading to DNA double-stranded breaks (DSBs) and stalled replication forks, enabling two distin
109 amination of how DNA double-stranded breaks (DSBs) are repaired, with many components of the ubiquiti
110 ent that induces DNA double-stranded breaks (DSBs) does not affect the interaction between DDB2 and X
114 se directly initiates the resection of clean DSBs by cleaving the 5' strand DNA approximately 10-20 n
117 sts that multiple mechanisms of conservative DSB repair may contribute to tumor suppression in human
118 e demonstrate that HR repair of conventional DSBs is severely compromised in DEK-deficient cells.
121 vide evidence indicating that Tel1-dependent DSB interference influences the population-average DSB l
124 bs1 (MRN) and Ku70-Ku80 (Ku) direct distinct DSB repair pathways, but the interplay between these com
126 s can be produced by a single engineered DNA DSB in H2ax knockout cells, and that the production of t
131 f the three major pathways known to mend DNA DSBs, namely homologous recombination (HR), nonhomologou
133 with Ub, using the cellular response to DNA DSBs as the primary setting to compare these modificatio
136 f PRMT5-mediated arginine methylation during DSB repair pathway choice through its ability to regulat
137 ly BLISS to profile endogenous and exogenous DSBs in low-input samples of cancer cells, embryonic ste
138 generate 3'-single-stranded DNA facilitates DSB repair via error-free homologous recombination (HR)
139 vironment surrounding DSBs which facilitates DSB repair and which is framed by extensive ZMYND8 domai
140 y immunofluorescence analysis of 53BP1 foci; DSB levels were determined by neutral comet assay; weste
141 ADP-ribosylation is also apparent following DSBs in vivo, by generating a strain with mutations at E
142 though tumor suppressor CtIP is critical for DSB end resection, a key initial event of HR repair, the
144 erved NHEJ to be the predominant pathway for DSB repair in our assay, MMEJ was significantly enhanced
156 recombination (HR) repair of heterochromatic DSBs relies on the relocalization of DSBs to the nuclear
158 under most irradiation conditions; however, DSBs were elevated only after exposure to lower doses.
161 s, Tel1 absence causes widespread changes in DSB distributions across large chromosomal domains.
164 ate that ruxolitinib-induced deficiencies in DSB repair pathways sensitized MPN cells to synthetic le
168 ment to DSBs, indicating that MLH1's role in DSB response/repair is important for suppressing TSI.
172 itivity to bleomycin, a drug known to induce DSBs, further supports that NMD pathway mutants are defe
173 g Beclin 1 improved the repair of IR-induced DSB, but did not restore an autophagy response in cells
177 detected from CRISPR/Cas9- or TALEN-induced DSBs within the examined endogenous genes in Arabidopsis
178 a highlight the threat posed by TOP2-induced DSBs during transcription and demonstrate the importance
179 ak-induced replication in which the invading DSB end and its donor template share a 108-base-pair hom
180 to 8 are deleted in a switching B cell line, DSB formation is severely reduced and CSR frequency is i
181 ologous end joining (NHEJ) are the two major DSB repair pathways that are highly conserved from yeast
182 und-Thomson Syndrome, promotes the two major DSB repair pathways, non-homologous end joining (NHEJ) a
185 nome coined "hot spots." In mammals, meiotic DSB site selection is directed in part by sequence-speci
186 elated SCs of other species regulate meiotic DSB formation to form crossovers crucial for meiosis.
187 ed chromosomes, suggesting that many meiotic DSBs are normally repaired by intersister recombination
189 gh recruitment of the MRE11-RAD50-NBS1 (MRN) DSB-sensing complex to viral genomes and activation of t
190 is that bKu would bind persistently to mtDNA DSBs, thereby preventing mtDNA replication or repair.
191 GRs that originated from naturally occurring DSBs at (GAA)n microsatellites in Saccharomyces cerevisi
193 11-oligonucleotide complexes, a byproduct of DSB formation, to reveal aspects of the contribution of
195 ec27, and Mug20) are protein determinants of DSB hotspots - they bind DSB hotspots with high specific
196 ysis of gammaH2AX foci showed no evidence of DSB induction after MR examination, independent of the a
197 Thus, our findings reveal the involvement of DSB repair in PD-L1 expression and provide mechanistic i
198 of genotoxic stress, but the involvement of DSB repair in PD-L1 expression has not been investigated
199 prehensive assessment of the localization of DSB repair proteins during KSHV replication, we have det
200 may allow the virus to evade localization of DSB repair proteins that would otherwise have a detrimen
203 dy identifies nRAGE as a master regulator of DSB-repair, the absence of which orchestrates persistent
206 her IgH germline transcription or joining of DSBs within S regions by classical nonhomologous end joi
207 uring the following: (1) direct labelling of DSBs in fixed cells or tissue sections on a solid surfac
208 regation of chromosomes, but the majority of DSBs are processed toward a safer alternative, namely no
211 n vitro transcription; (3) quantification of DSBs through unique molecular identifiers; and (4) easy
212 romatic DSBs relies on the relocalization of DSBs to the nuclear periphery before Rad51 recruitment.
218 racts with MDC1 and is recruited to sites of DSBs to facilitate the interaction of phospho-ATM with M
220 the absence of which orchestrates persistent DSB signaling to senescence, tissue-fibrosis and oncogen
221 ized away from both transient and persistent DSBs, whereas HPV E7 is only capable of impairing RAD51
222 n compromised HR and misrejoining of S-phase DSBs, and increased the sensitivity to DNA-damaging agen
227 of oocytes containing a synapsis-proficient, DSB repair-defective mutation in a gene (Trip13) require
229 X-ray-induced strand breaks, to recapitulate DSB repair via MMEJ or nonhomologous end-joining (NHEJ).
232 Atg7, suggesting that Beclin 1 may regulate DSB repair independent of autophagy in the cells exposed
235 shed that Polmu is the one adapted to repair DSBs with non-complementary ends, the most challenging s
240 rich motifs associated with meiosis-specific DSBs fold into intramolecular G-quadruplex and i-motif s
242 rming gammaH2AX immunofluorescence staining, DSBs were quantified with automated digital microscopy.
243 eric RNA:DNA hybrids, telomeric/subtelomeric DSBs and VSG switching frequency back to WT levels.
245 restricted chromatin environment surrounding DSBs which facilitates DSB repair and which is framed by
246 equirement by linear amplification of tagged DSBs by in vitro transcription; (3) quantification of DS
248 Therefore, this study provides evidence that DSB-mediated replication is the predominant form of mtDN
255 gions or harboring additional lesions at the DSB site, undergo resection prior to repair by c-NHEJ an
258 iencies and hyper-resection 0.15 kb from the DSB that was dependent on the nuclease activity of Dna2-
260 patient cells have pronounced defects in the DSB-induced histone modification, chromatin remodelling
265 panied by impaired recruitment of MRX to the DSB, and other functions of MRX in HR including the recr
266 OFD1 loss also adversely impacted upon the DSB-induced G2-M checkpoint, inducing a hypersensitive a
268 modulating the cell cycle stage at which the DSB was induced, we were able to avoid mosaicism in clea
269 e map genome-wide and at high resolution the DSBs induced by a restriction enzyme, and we characteriz
273 SB) sites, blocking DSB repair, which led to DSB accumulation, DNA damage responses, and early replic
275 s BRCA1 recruitment, and sensitizes cells to DSBs from IR or stalled replication forks that require H
276 Notably, artificial targeting of Fun30 to DSBs is sufficient to bypass the cell cycle regulation o
277 ) disrupt BRCA1-independent RAD51 loading to DSBs and stalled forks in PARPi-resistant BRCA1-deficien
278 In this study, the XPA mislocalization to DSBs occurred at stalled or collapsed replication forks,
280 pression of TSI requires MLH1 recruitment to DSBs, indicating that MLH1's role in DSB response/repair
285 dings suggest that translocation of TRADD to DSBs into the nucleus contributes to cell survival in re
286 ere, we used CRISPR/Cas9- or TALEN-triggered DSBs to characterize diRNAs in Arabidopsis and rice.
290 calizes with chromatin bound BRCA2, and upon DSB induction, RAD51 colocalizes with BRCA2-BCCIP foci.
292 d H4K16ac in cells after exposure to various DSB-inducing agents, including neocarzinostatin, gamma r
295 DSB clusters peak around 500 keV/mum, while DSB multiplicities per cluster steadily increase with LE
296 nucleotide loss or addition, explaining why DSBs repaired by NHEJ are rarely restored to their origi
298 ates in the nucleoplasm and colocalizes with DSBs in rad52Delta cells, leading to de novo telomere ad
299 ties with mechanisms in yeast that deal with DSBs in distinct sites that are difficult to repair, inc
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