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1 DUB activity was necessary for inflammasome association
2 DUB inhibitors, especially the inhibitors of proteasomal
3 DUB profiling identified 28 DUBs that cleave DIX-ubiquit
4 DUBs directly recognize existing conformations, but may
5 DUBs present specificity toward different ubiquitin chai
6 DUBs used in UbiCRest can be obtained commercially; howe
7 DUBs were, moreover, found to be associated with several
13 la pneumophila SidE effector family harbor a DUB module important for ubiquitin dynamics on the bacte
14 oronavirus papain-like protease (PLpro) is a DUB that cleaves ISG15, a two-domain Ub-like protein, an
15 and protein analysis show that Rpn11/POH1, a DUB enzyme upstream of 20S proteasome, is more highly ex
17 observations raise the question of whether a DUB can control the fate of a nonubiquitinated ERAD subs
18 dy reveals an unexpected paradigm in which a DUB prevents undesired ubiquitination to sharpen substra
20 believe the field of drug discovery against DUBs is still in its infancy, but advances in assay deve
24 ric inhibitors of the ubiquitin E1-E2-E3 and DUB enzymatic cascade developed over the past decade wit
28 as necessary for inflammasome association as DUB inhibition also impaired ASC oligomerization and cas
29 Successful capture of the TRIM-25-associated DUB, ubiquitin specific protease 15, demonstrated the ve
30 y, we probed the role of the ERAD-associated DUB, YOD1, during retro-translocation of the nonubiquiti
31 ntly, we identify USP13 as a gp78-associated DUB that eliminates ubiquitin conjugates from Ubl4A to m
32 nction and that JosD1, a membrane-associated DUB whose activity is regulated by ubiquitination, helps
33 via targeting the 19S proteasome-associated DUBs (UCHL5 and USP14), without effecting on the 20S pro
34 ione inhibits both 19S proteasome-associated DUBs and 20S proteasome activity with a mechanism distin
39 is study investigates the importance of BAP1 DUB activity and the interactions with FoxK2 and HCF-1 i
44 ur findings uncover a pivotal role of BRCC36 DUB in limiting DSB processing and repair and illustrate
45 a new regulatory mechanism underlying BRCC36 DUB activity, subcellular localization, and biological f
46 transcription factors, induction of IDOL by DUB inhibition is LXR-independent and occurs in Lxralpha
48 ariant of ubiquitin (HA-Ub-VME), we captured DUBs that are differentially recruited to the cytosol on
50 derable functional redundancy among cellular DUBs that restrict ubiquitin-dependent protein assembly
51 seudo DUB allosterically activates a cognate DUB partner and implicates super dimerization as a new r
60 gly, an MHV68 mutant lacking deubiquitinase (DUB) activity, embedded within the large tegument protei
62 derivatives block proteasome deubiquitinase (DUB) activity and have been developed and tested in the
74 domain (UBD), 10 out of 12 deubiquitinases (DUBs), including USP8, USP15 and USP30, are impaired in
75 oteasome peptidases and 19S deubiquitinases (DUBs) are becoming attractive targets of cancer therapy.
76 There are approximately 90 deubiquitinases (DUBs) encoded in the human genome, of which 79 are predi
78 ubiquitin ligases (E3s) and deubiquitinases (DUBs), enzymes with opposing activities, can both promot
81 s implicate ERAD-associated deubiquitinases (DUBs) as positive and negative regulators during ERAD, r
82 f two proteasome-associated deubiquitinases (DUBs), Rpn11 and Ubp6, and explored their impact on over
83 ssed to a similar extent by deubiquitinases (DUBs) as that of a native Nepsilon-Gly-L-Lys isopeptide
87 ovarian tumor (OTU) family deubiquitinases (DUBs) exist in humans, and most members regulate cell-si
88 omponents, particularly key deubiquitinases (DUBs) of the ubiquitin-specific protease (USP) class.
89 rate, and susceptibility to deubiquitinases (DUBs) affect processing of different substrates by prote
90 n be antagonized by various deubiquitinases (DUBs) including the CYLD tumour suppressor that attenuat
93 onjugating, E3 ligase, and deubiquitinating (DUB) enzymes offers an ideal platform for modulating act
94 vestigated whether the EBV deubiquitinating (DUB) enzyme encoded by BPLF1 targets ubiquitinated PCNA
98 ction of Ataxin-3 (ATXN3), a deubiquitylase (DUB) involved in Machado-Joseph Disease (MJD), remains e
101 ng cancer cells to identify deubiquitylases (DUBs) that have an impact on PI3K signaling by regulatin
102 examined whether targeting deubiquitylating (DUB) enzymes upstream of 20S proteasome overcomes protea
106 und that both forms of ATXN7 greatly enhance DUB activity but that ATXN7-92Q NT is largely insoluble
107 ently shown to be a deubiquitinating enzyme (DUB) and to possess deISGylating activity, as previously
108 th understanding of deubiquitinating enzyme (DUB) catalysis, particularly the mode of ubiquitin bindi
109 a Zn(2+)-dependent deubiquitinating enzyme (DUB) that hydrolyzes lysine-63-linked ubiquitin chains a
110 STAM3 (AMSH3) is a deubiquitinating enzyme (DUB) that interacts with endosomal complex required for
111 ate that USP25 is a deubiquitinating enzyme (DUB) that negatively regulates IL-17-triggered signaling
113 and the specialized deubiquitinating enzyme (DUB), ataxin-3, participate in initiating, regulating, a
114 have identified the deubiquitinating enzyme (DUB), ubiquitin-specific protease 7 (USP7), as a novel r
115 udied; however, the deubiquitinating enzyme (DUB), which regulates TRAF2 stability, has not been iden
116 , we identified the deubiquitination enzyme (DUB) USP20 as a pivotal regulator of ATR-related DDR pat
120 ffectively inhibit deubiquitinating enzymes (DUB), including the enzymes USP9x and UCH37, which are a
121 t can be reversed by deubiquitinase enzymes (DUBs) that remove ubiquitin moieties from the protein th
122 inating as well as deubiquitinating enzymes (DUBs) can regulate these processes by modifying the ubiq
124 is modification by deubiquitinating enzymes (DUBs) impacts genome maintenance in vivo is largely unkn
125 f linkage-specific deubiquitinating enzymes (DUBs) in parallel reactions, followed by gel-based analy
126 To search for the deubiquitinating enzymes (DUBs) involved in the antiviral activity of IFN, we used
131 f viruses encoding deubiquitinating enzymes (DUBs) suggests they remove ubiquitin to evade ubiquitin-
134 r homologous human deubiquitinating enzymes (DUBs), and no significant cytotoxicity in Vero E6 and HE
135 ing superfamily of deubiquitinating enzymes (DUBs), which is capable of inhibiting ISG15 production a
137 to 26 S-associated deubiquitinating enzymes (DUBs): in yeast to Ubp6, which is essential for the ATPa
139 pproach to uncover deubiquitylating enzymes (DUBs) that participate during TCR signaling in primary m
140 Here we show that deubiquitylating enzymes (DUBs) USP14 and UCHL5 are more highly expressed in MM ce
145 any of three members of the Josephin family DUBs: ataxin 3 (ATXN3), ataxin 3-like (ATXN3L) and Josep
148 verall, to our knowledge, USP13 is the first DUB identified to modulate STAT1 and play a role in the
150 roteins, ATXN7L3 and ENY2, are necessary for DUB activity toward histone H2Bub1 and other substrates.
151 heterodimers (super dimers) was required for DUB activity and interaction with targeting proteins SHM
153 gn and preparation of a FRET-based assay for DUBs based on the application of our recent chemical met
154 Our results uncover a novel function for DUBs in the endocytic pathway by which Ubp2 and Ubp15 po
156 ase 3 (USP3; Usp3Delta/Delta), a histone H2A DUB which negatively regulates ubiquitin-dependent DDR s
161 e observations led us to discover two H2Bub1 DUBs, USP27X and USP51, which function independently of
162 A interference screening to identify a human DUB, ubiquitin-specific protease (USP) 13, whose express
163 re, we reveal a previously unannotated human DUB, OTULIN (also known as FAM105B), which is exquisitel
165 idually overexpressing the majority of human DUBs on RNF8/RNF168-mediated 53BP1 retention at DSB site
166 iew, we discuss the recent findings on human DUBs that participate in genome maintenance, with a focu
167 Here we reveal USP48 as the first identified DUB to deubiquitinate and stabilize TRAF2 in epithelial
171 nism between the silencing machinery and its DUB partner allows erasure of active PTMs and the de nov
176 s of the OTU and JAB/MPN/Mov34 metalloenzyme DUB families and highlight that all USPs tested display
178 IC50 value of the nonspecific small molecule DUB inhibitor N-ethylmaleimide was 16.2+/-3.2 muM and ca
180 he role of USP19 in ERAD and suggest a novel DUB regulation that involves chaperone association and m
183 e evasion, but the selective inactivation of DUB activity also opens unique possibilities for develop
185 protein cleavage was intact, but the loss of DUB activity strikingly enhanced innate immune signaling
186 hese findings establish a novel mechanism of DUB regulation that may be integrated with other redox-d
187 We further discuss the many mechanisms of DUB regulation with a focus on those that modulate catal
188 e and highlight the therapeutic potential of DUB inhibitors for chronic auto-inflammatory diseases.
189 yed to assess the potency and specificity of DUB inhibitors by profiling 11 compounds against a panel
190 168 pathway and illustrate the usefulness of DUB overexpression screens for identification of antagon
192 icate that the regulation of the activity of DUBs is important for homeostasis and is achieved by mul
194 in-specific proteases (USP) are one class of DUBs that have drawn special attention as cancer targets
196 ectively, our results reveal a new family of DUBs that may have specialized roles in regulating prote
197 e we report the discovery of a new family of DUBs, which we have named MINDY (motif interacting with
198 cal entities for the selective inhibition of DUBs based on these tools are also highlighted with sele
200 hat the isothiocyanate-induced inhibition of DUBs may also explain how isothiocyanates affect inflamm
202 uncovers a novel class of dual inhibitors of DUBs and proteasome and suggests a potential clinical st
207 ome maintenance, with a focus on the role of DUBs in the modulation of DNA repair and DNA damage sign
209 e points to the important regulatory role of DUBs, the molecular basis of their regulation is still n
214 iverse roles of deubiquitinating enzymes, or DUBs, in determining the fate of specific proteins conti
216 n melanoma 2 pathways, and lack of the ORF64 DUB was associated with impaired delivery of viral DNA t
219 analysis and five crystal structures of OTU DUBs with or without Ub substrates reveal four mechanism
221 Ub chain restriction analysis, in which OTU DUBs are used as restriction enzymes to reveal linkage t
222 otein substrates involved in these pathways, DUBs provide an untapped means of modulating many import
227 w the polycomb repressive-deubiquitinase (PR-DUB) complex controls substrate selection specificity, w
230 ancestry for BAP1 and Uch37 regulators in PR-DUB, INO80 chromatin remodelling and proteosome complexe
232 ed a strategy to selectively disable PL(pro) DUB activity, we were able to specifically examine the e
233 n effective inhibitor of the 19S proteasomal DUBs and suggests a potentially new strategy for cancer
234 rs, especially the inhibitors of proteasomal DUBs are becoming a research hotspot in targeted cancer
237 ide an explanation of how an inactive pseudo DUB allosterically activates a cognate DUB partner and i
238 domain protein BRCC36 associates with pseudo DUB MPN(-) proteins KIAA0157 or Abraxas, which are essen
239 details for generating a toolkit of purified DUBs and for profiling their linkage preferences in vitr
240 mutate this surface to significantly reduce DUB activity without affecting polyprotein cleavage.
241 how that Arabidopsis AMSH1, an AMSH3-related DUB, interacts with the ESCRT-III subunit vacuolar prote
242 r results establish that two closely related DUBs differ markedly in activity and function and that J
246 ystal structure of the Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to a ubiquitinated nucleosome reveals t
249 there is an urgent need to identify specific DUBs associated with therapeutically relevant targets of
250 ) via targeting both 19S proteasome-specific DUBs and 20S proteolytic peptidases with a mechanism dis
252 cal data provide the rationale for targeting DUB enzyme Rpn11 upstream of 20S proteasome to enhance c
253 P15 in MM disease models validates targeting DUBs in the ubiquitin proteasomal cascade to overcome pr
254 ptualize the many layers of specificity that DUBs encompass to control the ubiquitin code and discuss
258 sequencing) analysis revealed that both the DUB and HAT modules bind most SAGA target genes even tho
264 itin binding and the individual steps in the DUB catalytic turnover, is imperative for exploiting DUB
266 Here, we report that ubiquitination of the DUB ataxin-3 at lysine residue 117, which markedly enhan
276 a ubiquitinated nucleosome reveals that the DUB module primarily contacts H2A/H2B, with an arginine
280 library to develop inhibitors targeting the DUBs USP7 and USP10, which are involved in regulating le
283 el and potent inhibitor able to inhibit this DUB in time-dependent manner with k(inact) = 0.065 min(-
287 biquitination in HSC signaling, and point to DUB-specific inhibitors as reagents to expand stem cell
292 how that USP51, a previously uncharacterized DUB, deubiquitylates H2AK13,15ub and regulates DNA damag
295 ubiquitinated by cellular USP1, by the viral DUB can disrupt repair of DNA damage by compromising rec
296 ensitive and fast assay to quantify in vitro DUB enzyme activity using matrix-assisted laser desorpti
297 ubiquitin code and discuss examples in which DUB specificity has been understood at the molecular lev
298 y to oxidative inhibition is associated with DUB activation wherein the active site cysteine is conve
299 ctively, and can be used in combination with DUBs to generate K29- and K33-linked chains for biochemi
300 rrogation of these branched derivatives with DUBs reveals that the relative orientation of the two Ub
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