ライフサイエンスコーパス: Deinococcus

1 ce in the pathways for dsDNA break repair in Deinococcus.

2 or R only in HU from Thermotoga, Thermus and Deinococcus.

3 the beta-hairpin structure that is unique to Deinococcus and Thermus species SSB proteins.

4 rrelated with the presence of Campylobacter, Deinococcus, and Sulfurospirillum Finally, we quantified

5 Gre factors (GreA and GreB) and the Thermus/Deinococcus anti-Gre factor Gfh1.

6 Deinococcaceae (e.g., Thermus, Meiothermus, Deinococcus) contain A/V-ATPases typically found in Arch

7 diation-resistant bacterial groups reported, Deinococcus, Enterococcus, Lactobacillus, and cyanobacte

8 Bacteria of the genus Deinococcus exhibit an extraordinary ability to withstan

9 e of five proteins induced to high levels in Deinococcus following extreme IR exposure and that play

10 Deinococcus (formerly Micrococcus) radiodurans is remark

11 failed, suggesting that this is an essential Deinococcus gene.

12 e first structures of the amylosucrases from Deinococcus geothermalis and Neisseria polysaccharea in

13 nzyme phosphorylase b from rabbit muscle and Deinococcus geothermalis glycogen branching enzyme.

14 A synthetase from a bacterium of the Thermus-Deinococcus group into the animal nuclear genome.

15 terial lineage of extremophiles, the Thermus-Deinococcus group.

16 contribute to the low substrate affinity of Deinococcus PRODH.

17 ree highly diverse taxonomic groups: Thermus/Deinococcus, Proteobacteria gamma/beta subdivision, and

18 ressed, and characterized a hemeprotein from Deinococcus radiodurans (D. radiodurans NO synthase, dei

19 otein from the radiation-resistant bacterium Deinococcus radiodurans (deiNOS) associates with an unus

20 Deinococcus radiodurans (DEIRA) can survive very high do

21 e RecA proteins of Escherichia coli (Ec) and Deinococcus radiodurans (Dr) both promote a DNA strand e

22 The resistance of Deinococcus radiodurans (Dr) to extreme doses of ionizin

23 Deinococcus radiodurans (Dr) withstands desiccation, rea

24 n enzyme from the amidohydrolase family from Deinococcus radiodurans (Dr-OPH) with homology to phosph

25 Deinococcus radiodurans (Drad), a bacterium with an extr

26 h droplets of the bacterial phytochrome from Deinococcus radiodurans (DrBphP), which is weakly fluore

27 The RecA protein of Deinococcus radiodurans (DrRecA) has a central role in g

28 The RecQ helicase from Deinococcus radiodurans (DrRecQ) is unusual among RecQ f

29 otein from the radiation-resistant bacterium Deinococcus radiodurans (DrSSB) functions as a homodimer

30 The RecA protein of Deinococcus radiodurans (RecA(Dr)) is essential for the

31 on usages are characterized in the genome of Deinococcus radiodurans (strain R1).

32 weakly promiscuous PLL scaffold (Dr0930 from Deinococcus radiodurans ), we designed an extremely effi

33 As an example, we use data on survival of Deinococcus radiodurans after high doses (thousands of G

34 rtholog enhances survival of the eubacterium Deinococcus radiodurans after ultraviolet irradiation.

35 We have purified the RecN protein from Deinococcus radiodurans and characterized its DNA-depend

36 ' from helix 40 of the large subunit rRNA in Deinococcus radiodurans and Escherichia coli, respective

37 einyl-tRNA synthetase from M. jannaschii and Deinococcus radiodurans and its characterization in vitr

38 herichia coli and to characterize DR_1025 of Deinococcus radiodurans and MM_0920 of Methanosarcina ma

39 ke proteins in two heterotrophic eubacteria, Deinococcus radiodurans and Pseudomonas aeruginosa.

40 proteins in the nonphotosynthetic eubacteria Deinococcus radiodurans and Pseudomonas aeruginosa.

41 coded by the radiation-resistant eubacterium Deinococcus radiodurans and show that DNA binding does n

42 In the radiation-resistant bacterium Deinococcus radiodurans and some eukaryotes, Ro has also

43 complex between the SF1B helicase RecD2 from Deinococcus radiodurans and ssDNA in the presence and ab

44 ts and genomic sequence analysis showed that Deinococcus radiodurans and Thermus thermophilus do not

45 te metabolism in the radiation-resistance of Deinococcus radiodurans are discussed.

46 When exponential-phase cultures of Deinococcus radiodurans are exposed to a 5000-Gray dose

47 taining polypeptides (Cys-polypeptides) from Deinococcus radiodurans as well as from mouse B16 melano

48 77) in the L1 loop of the non-discriminating Deinococcus radiodurans AspRS2 is required for tRNA(Asn)

49 crystal structure of the RecD2 helicase from Deinococcus radiodurans at 2.2-A resolution.

50 ome, using the chromophore-binding domain of Deinococcus radiodurans bacterial phytochrome assembled

51 ity by recombining the photosensor module of Deinococcus radiodurans bacterial phytochrome with the e

52 hore in the x-ray structure of a fragment of Deinococcus radiodurans bacteriophytochrome in the Pr fo

53 ino acids within the bilin-binding domain of Deinococcus radiodurans bacteriophytochrome with respect

54 MarR family, regulates uricase expression in Deinococcus radiodurans by binding a shared promoter reg

55 Deinococcus radiodurans can reconstitute its genome from

56 stal structures of this D207H variant of the Deinococcus radiodurans CBD, in which His-207 is observe

57 ynthase in the radiation-resistant bacterium Deinococcus radiodurans charges tRNA with tryptophan and

58 We show applications to the analysis of Deinococcus radiodurans chromosome I, of two strains of

59 Gene Dr1184 from Deinococcus radiodurans codes for a Nudix enzyme (DR-CoA

60 enome of the radiation-resistant eubacterium Deinococcus radiodurans contains an ortholog of an RNA-b

61 the extremely radiation resistant bacterium Deinococcus radiodurans contains genes for two SSB homol

62 The radiation-resistant bacterium Deinococcus radiodurans contains two DNA-binding protein

63 of Ro in the radiation-resistant eubacterium Deinococcus radiodurans contributes to survival of this

64 anges in gene expression as stationary phase Deinococcus radiodurans cultures recover from acute expo

65 Deinococcus radiodurans disproportionately favored TGA m

66 Taq DNA pol C is most closely related to the Deinococcus radiodurans DNA pol C.

67 However, Deinococcus radiodurans Dps-1, which binds DNA with high

68 encoding prolyl-tRNA synthetase) or with the Deinococcus radiodurans DR0705 gene, the ortholog of the

69 The mutY homolog gene (mutY(Dr)) from Deinococcus radiodurans encodes a 39.4-kDa protein consi

70 Q helicase from the radioresistant bacterium Deinococcus radiodurans encodes three "Helicase and RNas

71 Unlike the Haloarcula marismortui and Deinococcus radiodurans examples, the lower portion of h

72 Deinococcus radiodurans exhibits an extraordinary resist

73 of iron, Dps-1 from the radiation-resistant Deinococcus radiodurans fails to protect DNA from hydrox

74 imental data from gene expression studies on Deinococcus radiodurans following DNA damage using cDNA

75 ntial for preserving the genome integrity of Deinococcus radiodurans following treatment by gamma rad

76 New interpretations of the capacity of Deinococcus radiodurans for resistance to high doses of

77 The P5CDHs from Thermus thermophilus and Deinococcus radiodurans form trimer-of-dimers hexamers i

78 rnative sigma factors were identified in the Deinococcus radiodurans genome sequence and designated s

79 n this issue how the genome of the bacterium Deinococcus radiodurans gets reassembled after being sha

80 Deinococcus radiodurans has a remarkable capacity to sur

81 mparison with other Dps proteins, Dps-1 from Deinococcus radiodurans has an extended N terminus compr

82 The MarR homolog, HucR, from Deinococcus radiodurans has been shown to repress expres

83 smidic and intrachromosomal recombination in Deinococcus radiodurans has been studied recently and ha

84 genes from the radiation-resistant organism Deinococcus radiodurans have been cloned into vectors un

85 e we have identified, cloned and deleted the Deinococcus radiodurans HspR homologue, DR0934.

86 the structures of proline dehydrogenase from Deinococcus radiodurans in the oxidized state complexed

87 Here, we demonstrate that the RecF of Deinococcus radiodurans interacts with DNA as an ATP-dep

88 Deinococcus radiodurans is a highly radiation-resistant

89 RecD2 from Deinococcus radiodurans is a superfamily 1 DNA helicase

90 Deinococcus radiodurans is extraordinarily resistant to

91 The bacterium Deinococcus radiodurans is extremely resistant to high l

92 Deinococcus radiodurans is extremely resistant to ionizi

93 Deinococcus radiodurans is highly resistant to radiation

94 The bacterium Deinococcus radiodurans is resistant to extremely high l

95 from the extremely radioresistant bacterium Deinococcus radiodurans is the exact inverse of this est

96 Deinococcus radiodurans is unique in its ability to reco

97 We report that the complex between Deinococcus radiodurans NOS (deiNOS) and an unusual tryp

98 otein in the radiation-resistant eubacterium Deinococcus radiodurans participates in ribosomal RNA (r

99 ructure of the chromophore-binding domain of Deinococcus radiodurans phytochrome assembled with its c

100 re of the chromophore-binding domains of the Deinococcus radiodurans phytochrome at 2.1 A resolution.

101 oreceptor through structural analysis of the Deinococcus radiodurans phytochrome BphP assembled with

102 ochemical, and computational analyses of the Deinococcus radiodurans phytochrome, we demonstrate that

103 ing (Pr) state, the bilin chromophore of the Deinococcus radiodurans proteobacterial phytochrome (DrB

104 Deinococcus radiodurans R1 (DEIRA) is a bacterium best k

105 Deinococcus radiodurans R1 and other members of this gen

106 e complete genome sequence of the bacterium, Deinococcus radiodurans R1 has been released.

107 ual ORFs from Shewanella oneidensis MR-1 and Deinococcus radiodurans R1 have been designed.

108 equence of the radiation-resistant bacterium Deinococcus radiodurans R1 is composed of two chromosome

109 Deinococcus radiodurans R1 is extremely resistant to bot

110 , developed to facilitate gene disruption in Deinococcus radiodurans R1, has been used to inactivate

111 in and Snf2/Rad54 helicase were reported for Deinococcus radiodurans R1, leading to the speculation t

112 e hypothetical uricase regulator (HucR) from Deinococcus radiodurans R1.

113 We show here that Deinococcus radiodurans RecD2 helicase inactivates Esche

114 Intriguingly, Deinococcus radiodurans RecO does not bind SSB-Ct and we

115 Deinococcus radiodurans represents an organism in which

116 Deinococcus radiodurans RNA ligase (DraRnl) is a templat

117 Deinococcus radiodurans RNA ligase (DraRnl) is the found

118 Deinococcus radiodurans RNA ligase (DraRnl) seals 3-OH/5

119 hermophilic Thermus aquaticus and mesophilic Deinococcus radiodurans RNAPs and identify the FL as an

120 Deinococcus radiodurans single-stranded (ss) DNA binding

121 The Deinococcus radiodurans SSB protein has an occluded site

122 rmined a 1.8-A-resolution x-ray structure of Deinococcus radiodurans SSB.

123 IRS24 is a DNA damage-sensitive strain of Deinococcus radiodurans strain 302 carrying a mutation i

124 equence of the radiation-resistant bacterium Deinococcus radiodurans suggests the presence of both di

125 erization of HucR, a novel MarR homolog from Deinococcus radiodurans that demonstrates phenolic sensi

126 fication of the large ribosomal subunit from Deinococcus radiodurans that exploits its association wi

127 this instrument, we employ a model system of Deinococcus radiodurans that has been engineered to expr

128 response of the genomes of cyanobacteria and Deinococcus radiodurans to ionizing radiation.

129 mplex from the radiation-resistant bacterium Deinococcus radiodurans to protect protein epitopes from

130 The ability of Deinococcus radiodurans to recover from extensive DNA da

131 The remarkable ability of bacterium Deinococcus radiodurans to survive extreme doses of gamm

132 re we report the 1.75-A crystal structure of Deinococcus radiodurans topoisomerase IB (DraTopIB), a p

133 Deinococcus radiodurans topoisomerase IB (DraTopIB), an

134 y identified peptides from the microorganism Deinococcus radiodurans was used for the training of the

135 -one ionizing radiation-sensitive strains of Deinococcus radiodurans were evaluated for their ability

136 hesis activity by a different bacterial NOS (Deinococcus radiodurans) but not by any of the three mam

137 aeal (Haloarcula marismortui) and bacterial (Deinococcus radiodurans) large ribosomal subunits have b

138 uman and two bacterial (Escherichia coli and Deinococcus radiodurans) MnSODs.

139 Deinococcus radiodurans, a highly radioresistant and str

140 used to measure in situ Mn(II) speciation in Deinococcus radiodurans, a radiation-resistant bacteria

141 A whole-genome restriction map of Deinococcus radiodurans, a radiation-resistant bacterium

142 Deinococcus radiodurans, a radiation-resistant bacterium

143 certain other bacteria, such as E. coli and Deinococcus radiodurans, although the average mutation r

144 r analyzing mutations in Escherichia coli to Deinococcus radiodurans, an extremeophile with an astoni

145 l subunit RNAs of Haloarcula marismortui and Deinococcus radiodurans, and the small ribosomal subunit

146 e, by comparing RNAPs from Escherichia coli, Deinococcus radiodurans, and Thermus aquaticus, we show

147 present in Yersinia pestis and the other in Deinococcus radiodurans, appear to encode closely relate

148 Here we show that in Synechocystis sp. and Deinococcus radiodurans, as in A. aeolicus, CCA is added

149 ed open reading frames for the microorganism Deinococcus radiodurans, consistent with previous result

150 ned nucleotide co-occurrence patterns in the Deinococcus radiodurans, D. geothermalis, and Thermus th

151 Four of these genomes (Deinococcus radiodurans, Escherichia coli, Haemophilus i

152 tridium sticklandii, Cytophaga hutchinsonii, Deinococcus radiodurans, Escherichia coli, Magnetospiril

153 mic function-type heat shock sigma factor of Deinococcus radiodurans, has been shown to play a centra

154 nformation on DXS, from Escherichia coli and Deinococcus radiodurans, in complex with the coenzyme th

155 We now show that a bacteriophytochrome from Deinococcus radiodurans, incorporating biliverdin as the

156 by one particular family member, ISDra2 from Deinococcus radiodurans, is dramatically stimulated upon

157 Deinococcus radiodurans, known for its extraordinary DNA

158 Shewanella putrefaciens, Synechocystis sp., Deinococcus radiodurans, Pasteurella multocida, and Acti

159 and 200 than those for Escherichia coli and Deinococcus radiodurans, respectively.

160 velopment of bioremediation strategies using Deinococcus radiodurans, the most radiation resistant or

161 ive potential lateral transfer with archaea; Deinococcus radiodurans, the most radiation-resistant mi

162 truction and characterization of recombinant Deinococcus radiodurans, the most radiation-resistant or

163 onuclease A and the ICAT-labeled proteome of Deinococcus radiodurans, the presence of these label-spe

164 In both animal cells and the eubacterium Deinococcus radiodurans, the Ro autoantigen, a ring-shap

165 In the only studied bacterium, Deinococcus radiodurans, the Ro ortholog Rsr functions i

166 ersal in Bacteria as t(6)A is dispensable in Deinococcus radiodurans, Thermus thermophilus, Synechocy

167 The NOS gene from one such bacterium, Deinococcus radiodurans, was cloned and expressed (deiNO

168 member of the amidohydrolase superfamily in Deinococcus radiodurans, was cloned, expressed, and puri

169 siccation- and radiation-resistant bacterium Deinococcus radiodurans, we suggest that the extraordina

170 d based on the radiation-resistant bacterium Deinococcus radiodurans, which is being engineered to ex

171 we analyzed the sHsp system of the bacterium Deinococcus radiodurans, which is resistant against vari

172 viously shown that urate is a ligand for the Deinococcus radiodurans-encoded MarR homolog HucR (hypot

173 aRnl) from the radiation-resistant bacterium Deinococcus radiodurans.

174 the extremely radiation resistant bacterium Deinococcus radiodurans.

175 Shewanella oneidensis, Escherichia coli and Deinococcus radiodurans.

176 r the ionizing radiation-resistant bacterium Deinococcus radiodurans.

177 sensory core of the bacteriophytochrome from Deinococcus radiodurans.

178 ly: LutC protein, encoded by ORF DR_1909, of Deinococcus radiodurans.

179 m the ionizing radiation-resistant bacterium Deinococcus radiodurans.

180 i, and the extremely radioresistant organism Deinococcus radiodurans.

181 ccharomyces cerevisiae, Eschericia coli, and Deinococcus radiodurans.

182 trometry and compared to a tryptic digest of Deinococcus radiodurans.

183 for 50S subunit complexes of the eubacterium Deinococcus radiodurans.

184 r, using the bacteriophytochrome (BphP) from Deinococcus radiodurans.

185 the populations approached that exhibited by Deinococcus radiodurans.

186 Escherichia coli, Thermus thermophilus, and Deinococcus radiodurans.

187 e present the crystal structure of RecF from Deinococcus radiodurans.

188 dinary radiation resistance on the bacterium Deinococcus radiodurans.

189 sis-dependent DNA strand-annealing system of Deinococcus radiodurans.

190 structure of the large ribosomal subunit of Deinococcus radiodurans.

191 were previously uncharacterized, including a Deinococcus-related organism, relatives of which have be

192 |RNN and NNR|YNN codon pairs, whereas in the Deinococcus species the opposite over-/underabundance re

193 This result demonstrates that in Deinococcus, the only route to asparagine is via asparag

194 However, SSB proteins from the Deinococcus-Thermus genera are exceptions to this rule,

195 -Proteobacteria, Clostridia, Actinobacteria, Deinococcus-Thermus species and DNAs from environmental

196 Thermotogales, Actinobacteria, Chloroflexi, Deinococcus-Thermus, and Proteobacteria.

197 n members of Firmicutes, Actinobacteria, and Deinococcus-Thermus, but not in Proteobacteria, where (p

198 cterial phylogenetic tree, i.e., Thermotoga, Deinococcus-Thermus, Cyanobacteria, spirochetes, and alp