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1 ERV promoters drive tissue-specific and lineage-specific
2 ERV proteins may trigger lupus through structural and fu
3 ERV reactivation is accompanied by an epigenetic shift f
4 ERVs are commonly found in two forms, the full-length pr
5 ERVs are epigenetically silenced during development, yet
6 ERVs are provirus insertions in germline cells that are
7 ERVs belong to a diverse group of mobile genetic element
8 ERVs can proliferate within the genome of their host unt
12 ion-defective human endogenous retrovirus 9 (ERV-9) and thousands of copies of its solitary long term
18 nd performing simple correlations across all ERV lineages, we show that when ERVs lose the env gene t
20 subsequent revascularization (25%), or to an ERV group (n = 152), which mandated revascularization wi
22 ce of different ERV lineages, so we analyzed ERV loci recovered from 38 mammal genomes by in silico s
23 on and interaction properties of the p24 and ERV-29 cargo adaptors, as well as their role in cellulas
26 sulfide intermediate between thioredoxin and ERV domains was highlighted by rapid reaction studies in
27 pported clade in retroviral phylogenies, and ERVs that group with these genera have been termed class
28 g to germline integration and inheritance as ERVs, genetic parasites whose remnants today constitute
31 we characterized a family of class II avian ERVs, "TgERV-F," that acquired a mammalian gammaretrovir
32 ity have revealed novel interactions between ERVs and their hosts, with the potential to cause or con
33 properties of individual ERE isolates (both ERVs and sLTRs) were then characterized in the following
36 rly 5% of the genome assembly is occupied by ERV-derived sequences, a quantity comparable to findings
37 pt that some of the gene products encoded by ERVs and other endogenous viral elements may offer to th
38 t-transcriptionally silence coding-competent ERVs, while 18 nt tRFs specifically interfere with rever
39 tern of retroviral evolution and contrasting ERV diversity with known retroviral diversity, our study
40 ion of dedicated host mechanisms controlling ERV activity have revealed novel interactions between ER
42 termined the relative abundance of different ERV lineages, so we analyzed ERV loci recovered from 38
46 le elements, endogenous retroviral elements (ERVs) containing long terminal repeats (LTRs), are silen
47 g in vitro and polymorphic ERVs, older fixed ERVs) allowed us to disentangle integration vs. fixation
49 sues, suggesting that tissues permissive for ERV activity gain access to an otherwise silenced source
50 eloped a pipeline to screen full genomes for ERVs, and using this pipeline, we have located over 800
51 cases where transcription is initiated from ERV sequences that are located in gene proximal promoter
54 al BLT-1, low levels of minimally functional ERV-1, and inversed coexpression when compared to neutro
55 ansgenic zebrafish harboring the beta-globin ERV-9 LTR coupled to the GFP gene, the LTR enhancer was
56 lobin gene locus showed that the beta-globin ERV-9 LTR enhancer initiated RNA synthesis from the LTR
58 otal of 1,509 of approximately 319,000 human ERV LTR regions have a near-perfect p53 DNA binding site
61 low gene density and elevated rates of human ERV integration in males for chromosome Y and segmental
62 ies for individual genes indicate that human ERV p53 sites are likely part of the p53 transcriptional
64 LTR, although members of one group of human ERVs (HERVs), HERV-K, were recently active with members
69 ant H3.3 is enriched at class I and class II ERVs, notably those of the early transposon (ETn)/MusD f
72 rphism than X-MLVs, and these differences in ERV acquisition and fixation are linked to subspecies-sp
75 onstrate that ZFP809 is required to initiate ERV silencing during embryonic development but becomes l
76 arly placental morphogenesis, because intact ERV envelope genes were found to be expressed in the syn
79 en merged to the Repbase collection of known ERV/long terminal repeat (LTR) elements to annotate the
81 f the methodology used here to analyze large ERV datasets and improve understanding of retroviral evo
83 process became available when a full-length ERV isolated from koalas (KoRV) was shown to have integr
85 ls and birds were screened, and epsilon-like ERV fragments were found in all primate and tree shrew g
87 ver 800 fragments of endogenous epsilon-like ERVs in the genomes of all major groups of primates, inc
88 y few mammals are known to have epsilon-like ERVs; however, we have identified over 800 fragments of
89 oxin domains to a catalytically more limited ERV domain has produced an efficient catalyst for the di
90 al history of a specific retrovirus lineage (ERV-Fc) that disseminated widely between ~33 and ~15 mil
98 ubspecies origins of laboratory mouse XP-MLV ERVs and their coevolutionary trajectory with their XPR1
104 ial cells on matrigels and unlike MV-Edm, MV-ERV infected newly formed blood vessels in chorioallanto
106 fection clearly show the potential use of MV-ERV in gene therapy for targeting tumor-associated vascu
107 specificity, potency, and feasibility of MV-ERV infection clearly show the potential use of MV-ERV i
111 he mechanistic level, Rif1 directly occupies ERVs and is required for repressive histone mark H3K9me3
112 ty-three percent of 1-year survivors (85% of ERV group and 80% of IMS group) were in New York Heart A
113 lecular mimicry, whereas the accumulation of ERV-derived nucleic acids stimulates interferon and anti
115 nt greater appreciation of the complexity of ERV biology and the identification of dedicated host mec
117 transcribed from many of the 4000 copies of ERV-9 LTR retrotransposons acted by a similar cis mechan
118 obal knockdown or locus-specific deletion of ERV-9 lncRNAs in human erythroblasts carrying approximat
119 m recent studies cataloging the diversity of ERV LTRs acting as important transcriptional regulatory
121 formation decreases rapidly as a function of ERV age and that an age dependent model of solo-LTR form
123 counteracted LPS and TNF-alpha induction of ERV-1 overexpression and endogenous diabetic overexpress
124 Trex1 deficiency or blocked integration of ERV-encoded DNA also promotes lupus in murine models.
127 A solitary long terminal repeat (LTR) of ERV-9 human endogenous retrovirus is located upstream of
129 The solitary long terminal repeats (LTRs) of ERV-9 endogenous retrovirus contain the U3, R, and U5 re
132 Here we show that an LTR retrotransposon of ERV-9 human endogenous retrovirus located 40-70 kb upstr
133 transcribed from the LTR retrotransposons of ERV-9 human endogenous retrovirus activated transcriptio
134 that intronic RNAs arising from U3 sLTRs of ERV-9 were expressed as both sense (S) and antisense (AS
136 ethylation and transcriptional activation of ERVs, including CpG-rich IAP (intracisternal A particle)
138 g that the envelope of a particular class of ERVs of sheep, endogenous Jaagsiekte sheep retroviruses
139 te proviruses from the three main classes of ERVs, which were further resolved into 13 major families
140 reciated role for immunity in the control of ERVs and provide a potential mechanistic link between im
144 tion, we examine whether the distribution of ERVs can be explained by host factors predicted to influ
146 e diversity, we uncover a great diversity of ERVs, indicating that retroviral sequences are much more
147 cale consistent with a substantial effect of ERVs on the function and evolution of the human genome.
151 solo-LTR formation describes the history of ERVs more accurately than the commonly used exponential
152 an unexpectedly strong functional impact of ERVs in disrupting gene transcription at a distance and
157 ranslocation (TET) enzymes at LTR regions of ERVs, because vitamin C acts as a cofactor for TET prote
159 any previously uncharacterized repressors of ERVs, and defined an essential role of Rif1 in the epige
160 KRAB-ZFP) family, initiates the silencing of ERVs in a sequence-specific manner via recruitment of he
163 The findings suggest that, during oogenesis, ERV-9 LTR enhancers in the human genome could activate t
169 tionary ages (young in vitro and polymorphic ERVs, older fixed ERVs) allowed us to disentangle integr
170 contributions from xenotropic and polytropic ERVs differentially alter the regions responsible for re
172 peculate how this interaction could preserve ERV/host chimeric gene products affecting female fertili
174 LTR sequences derived from distantly related ERVs have been exapted as regulatory sequences for many
177 tic signal from large endogenous retrovirus (ERV) datasets by collapsing information to facilitate br
180 on of hypermethylated endogenous retrovirus (ERV) genes accompanies the response and ERV overexpressi
181 e mapped thousands of endogenous retrovirus (ERV) germline integrants in highly divergent, previously
182 port that LTR class I endogenous retrovirus (ERV) retroelements impact considerably the transcription
184 nce gene is a coopted endogenous retrovirus (ERV) sequence related to the gag gene of the MuERV-L ERV
186 biallelic and include endogenous retrovirus (ERV) targets, the rest show monoallelic binding based ei
187 ctionally transcribed endogenous retrovirus (ERV) transcripts, increased cytosolic dsRNA, and activat
188 etrotransposons, or endogenous retroviruses (ERV), account for most novel insertions and are expresse
206 viruses have become endogenous retroviruses (ERVs) on several occasions, integrating into germ line c
210 ting in the form of endogenous retroviruses (ERVs) that account for nearly one-tenth of the mouse and
211 us MLVs derive from endogenous retroviruses (ERVs) that were acquired by the wild mouse progenitors o
213 The life cycle of endogenous retroviruses (ERVs), also called long terminal repeat (LTR) retrotrans
214 al tracts, and also endogenous retroviruses (ERVs), comprising a substantial fraction of the mammalia
215 elements, including endogenous retroviruses (ERVs), constitute a large fraction of the mammalian geno
217 siderable number of endogenous retroviruses (ERVs), relics of ancestral infectious retroviruses, whos
220 ividual families of endogenous retroviruses (ERVs), they have remained active throughout the mammalia
221 ng the germ line as endogenous retroviruses (ERVs), where they lose their infectivity over time but c
228 REs (a total of 111 endogenous retroviruses [ERVs] and 488 solo long terminal repeats [sLTRs]) within
229 andomization to the early revascularization (ERV) or initial medical stabilization (IMS) arms of the
230 patients in the emergency revascularization (ERV) group and by clinical selection in 100 of 150 (67%)
232 the embryonic axin gene show that a solitary ERV-9 LTR has been stably integrated in the respective l
235 isease, there is mounting evidence that some ERVs have become integral components of normal host deve
236 rrying a single copy of the primate-specific ERV-9 LTR in the 100 kb human beta-globin gene locus.
237 in other tissues shows that species-specific ERV enhancer activity is generally restricted to hypomet
238 mouse viruses derive directly from specific ERVs or arise by recombination between different ERVs.
239 f innate immunity, and that lineage-specific ERVs have dispersed numerous IFN-inducible enhancers ind
257 e space, and a larger protein containing the ERV/ALR domain, quiescin-sulfhydryl oxidase (QSOX).
260 contrast, the proximal CXXC disulfide in the ERV (essential for respiration and vegetative growth) do
261 -year survival was 46.7% for patients in the ERV group compared with 33.6% in the IMS group (absolute
263 ults demonstrate the unique potential of the ERV fossil record for studying the processes of viral sp
266 As acted in cis to stabilize assembly of the ERV-9 LTR enhancer complex and facilitate long-range LTR
267 ts carrying approximately 4000 copies of the ERV-9 LTRs and in transgenic mouse erythroblasts carryin
270 the redox properties between members of the ERV/ALR family of sulfhydryl oxidases provides insights
273 cluding the beta-globin gene locus where the ERV-9 LTR is juxtaposed to the locus control region (bet
276 CRISPR-Cas9 deletion of a subset of these ERV elements in the human genome impaired expression of
278 bryos and embryonic stem cells (ESCs), these ERVs remain silenced when Np95 is deleted alone or in co
280 histone modifications) in +/-32 kb of these ERVs' integration sites and in control regions, and anal
288 e that recruitment of DAXX, H3.3 and KAP1 to ERVs is co-dependent and occurs upstream of ESET, linkin
289 ibution of de novo ASLV integration sites to ERVs indicated that purifying selection against gene dis
292 el of recovery for shock patients undergoing ERV is similar to that of historical controls not in car
293 provide a useful framework for understanding ERV evolution, enabling the testing of evolutionary hypo
294 lutionary side effects, it is useful to view ERVs as fossil representatives of retroviruses extant at
295 s across all ERV lineages, we show that when ERVs lose the env gene their proliferation within that g
296 nfections and certain cancers, coincide with ERV expression, suggesting that transcriptional reawaken
298 imeric transcripts that are initiated within ERV long terminal repeat (LTR) sequences and read-throug
299 ach P-MLV has an E-MLV backbone with P- or X-ERV replacements that together cover 100% of the recombi
300 ow close relationships to a small xenotropic ERV subgroup largely confined to the inbred mouse Y chro
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