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1 r stability and cleavage by an endonuclease (EcoRI).
2 three restriction enzymes (BsoBI, XhoI, and EcoRI).
3 ferent from that of the related endonuclease EcoRI.
4 igated and compared with a previous study on EcoRI.
5 ch greater dependence on osmotic stress than EcoRI.
6 sequence discrimination of substrate DNA by EcoRI.
7 .39 for HindIII, .04 for BamHI, and .02 for EcoRI.
8 ation of the circular SV40 genomic DNAs with EcoRI.
9 ontaining scaffold to M13mp7L2 linearized by EcoRI.
10 M.XmnI is loosely related to M.EcoRI.
11 eters for the cleavage reaction catalyzed by EcoRI.
12 adducts appeared to inactivate or sequester EcoRI.
13 -open were cleaved poorly, or not at all, by EcoRI.
15 is part of, or immediately adjacent to, the EcoRI active site and which is conserved in the distantl
16 nd PCR amplification was carried out with an EcoRI adaptor-specific primer labelled with fluorescent
18 n directing sequence-specific DNA binding by EcoRI and are also crucial in assisting site discriminat
22 otected supercoiled plasmid from cleavage by EcoRI and DraI enzymes at their respective restriction s
24 ctive ecoRVR gene between the cloning sites (EcoRI and HindII or NotI) permits the positive selection
26 project, two whole-genome restriction maps (EcoRI and HindIII) of R. sphaeroides strain 2.4.1 were c
27 n with the restriction enzymes BamHI, BglII, EcoRI and KpnI increased the efficiency of linearized pl
28 R products were then digested with PvuII and EcoRI and ligated into a vector which had this same regi
29 terize the cognate and star site activity of EcoRI and MfeI and demonstrate genome-wide decreases in
30 ective primers were examined, and one, using EcoRI and MseI with additional selective TC bases on the
31 enomic DNAs were digested with endonucleases EcoRI and MseI, site-specific adaptors were ligated, and
33 tivity by type II restriction enzymes BamHI, EcoRI and SalI, and inhibition was confirmed through the
36 esidues identified, 11 are conserved between EcoRI and the isoschizomer RsrI (which shares 50% identi
40 sing different restriction enzymes (HindIII, EcoRI, and MboI, respectively), were evaluated with a se
41 s digested with the restriction endonuclease EcoRI, and restriction fragment length polymorphisms wer
42 haromyces was digested with the endonuclease EcoRI, and the resultant fragments were separated by ele
43 currence of Class I SSRs in end-sequences of EcoRI- and HindIII-digested BAC clones was one SSR per 4
48 e show that at the cognate sequence (GAATTC) EcoRI binding releases about 70 fewer water molecules th
49 of a splay in the G(4)-C(9) base pair of the EcoRI binding site and a potential pocket of flexibility
52 creased end-to-end distance resulting from M.EcoRI binding, mediated by a mechanism novel for DNA met
54 how a prototypical restriction endonuclease, EcoRI, binds to the DNA target sequence--GAATTC--in the
55 t with levels of restriction site avoidance, EcoRI, but not EcoRV, cleaves self-DNA at a measurable r
57 te that the site-specific restriction enzyme EcoRI can be conjugated to 20-nm fluorescent nanoparticl
58 absence of Cu(2+), the Mg(2+)-dependence of EcoRI catalysis shows positive cooperativity, which woul
63 restriction endonuclease analysis (REA) with EcoRI clustered the U.S. and European isolates into two
65 of DNA adducts and the crystal structure of EcoRI complexed to substrate suggest a model to explain
66 the absence of cofactor magnesium ions, the EcoRI conjugates bind to specific sequences on double-st
67 rence in hydration changes by both BamHI and EcoRI could be attributed to these dissimilar secondary
69 also subjected to Southern blot analysis of EcoRI-digested genomic DNA using the same full-length HT
71 of P1 cleavage sites in pBR322, achieved by EcoRI digestion after the original P1 attack, showed an
74 with 5-azadeoxycytosine restored the normal EcoRI digestion pattern of wt1 in these cells indicating
76 viously characterized specificity-enhanced M.EcoRI DNA adenine methyltransferase mutant suggest a clo
77 ctional gene was localized to a 2.15-kb SacI-EcoRI DNA fragment containing an open reading frame of 5
83 ), k(off), and k(on)) was determined for the EcoRI DNA methyltransferase under noncatalytic condition
85 rgetics and kinetics of base flipping by the EcoRI DNA methyltransferase were investigated by two met
90 ith recent crystal and NMR structures of the EcoRI dodecamer, where an overall bend of seven degrees
95 okI, BglI, BglII, PvuII, SfiI, BssSI, BsoBI, EcoRI, EcoRV, MspI, and HinP1I were subjected to oxidizi
96 inding constants of the restriction nuclease EcoRI enable us to determine the diffusion rate of nonsp
99 the dissociation rate of specifically bound EcoRI endonuclease and the ratio of non-specific and spe
101 rameters governing cleavage of pBR322 DNA by EcoRI endonuclease are highly sensitive to ionic environ
104 2+) coordinates to histidine residues in the EcoRI endonuclease homodimer bound to its specific DNA r
108 We have isolated temperature-sensitive (TS) EcoRI endonuclease mutants (R56Q, G78D, P90S, V97I, R105
110 A direct competition experiment with the EcoRI endonuclease shows the methyltransferase to be sli
112 , we have exploited "promiscuous" mutants of EcoRI endonuclease to study the detailed mechanism by wh
115 I(E111Q), a hydrolytically defective form of EcoRI endonuclease) placed on the helix between the two
117 late Tel1 activation after expression of the EcoRI endonuclease, which generates "clean" DNA ends.
118 uence, and no change in energy transfer with EcoRI endonuclease, which leaves this sequence unbent.
119 ion X-ray crystal structure of the wild-type EcoRI endonuclease-DNA complex revealed that: (1) the TS
120 ncreased recombination and suppressed HO and EcoRI endonuclease-induced killing of rad50 strains.
122 s method uses cellular DNA digested with the EcoRI enzyme and the restriction fragment length polymor
124 1A gene is included entirely within a 6.4-kb EcoRI fragment and comprises two coding exons separated
125 here the cloning and mapping of this 21.5 kb EcoRI fragment and it was shown to complement each of th
130 7% sensitivity with primer pairs directed to EcoRI fragment D, 32% sensitivity with primer pairs dire
133 the 4.29 kb SspI fragment and an overlapping EcoRI fragment from one end of the inverted repeat, whil
135 l 11p15.5 breakpoint which disrupts a 7.8 kb EcoRI fragment in all three of the delta t(X;11) chromos
143 Southern blot hybridization of a 827-bp 3' EcoRI fragment of the TAL-H cDNA to human-mouse somatic
144 sfection of plasmids containing the EK or JK EcoRI fragment or a 3-kb plasmid with the UL34.5 gene of
145 fragment revealed that the presence of this EcoRI fragment resulted from an inability of this enzyme
146 y(dG-dC) polynucleotides and to a 400-bp DNA EcoRI fragment resulted in a shift in the fragment size
149 nd 5590 possessed insertions within a 5.0 kb EcoRI fragment that is not contiguous with the exoenzyme
150 Six mini-Tn 10 insertions in the 3.7 kb EcoRI fragment were recombined into the L. pneumophila c
151 ural gene resides within a 7.4-kilobase SalI-EcoRI fragment with four exons corresponding to amino ac
152 cted in vitro by deleting an internal 1.4-kb EcoRI fragment, did not show blue-staining sectors.
153 d with HGPRT within a 4.3-kilobase pair (kb) EcoRI fragment, implying that the two genes arose as a r
159 ide probe.A Lambda ZAP II library containing EcoRI fragments of L. kirschneri DNA was screened, and a
166 have been mapped in the DNA sequence of the EcoRI-H and -Dhet fragments of B95-8 Epstein-Barr virus.
167 8 to 20 bands, when hybridized to EcoRI- or EcoRI-HaeIII-digested DNA of independent C. tropicalis i
169 ivity with engineered high-fidelity variants EcoRI-HF and MfeI-HF, as well as quantify the influence
171 anogen bromide-activated Sepharose 4B) binds EcoRI in the absence of Mg2+ and elutes when Mg2+ is app
172 positive cooperativity, which would enhance EcoRI inactivation of foreign DNA by irreparable double-
173 exon 3 of HPRT: The enzymes BamHI, BglII and EcoRI increased the illegitimate integration efficiency
176 ficient for EcoRI of 3 x 10(4) bp(2) s(-)(1) EcoRI is able to diffuse approximately 150 bp, on averag
177 expectedly, Mg(2+)-catalyzed DNA cleavage by EcoRI is profoundly inhibited by Cu(2+) binding at these
178 This distortion of DNA conformation by M.EcoRI is shown to be important for sequence-specific bin
179 lthough the method described is specific for EcoRI, it can be readily modified for the purification o
180 gated: seven enzymes with a single cut site (EcoRI, KpnI, NdeI, NotI, NruI, SmaI, XbaI), two enzymes
182 nts were generated by partial digestion with EcoRI (library segments 1--4: 24-fold) and MboI (segment
187 I endonuclease mutants in the absence of the EcoRI methyltransferase induces the SOS DNA repair respo
191 h a bending-impaired, enhanced-specificity M.EcoRI mutant show minimal differences with the cognate D
193 solution and solid-state NMR studies of the EcoRI nuclease target sequence, and solid-state NMR stud
194 We calculate a diffusion coefficient for EcoRI of 3 x 10(4) bp(2) s(-)(1) EcoRI is able to diffus
195 t and control DNA samples were digested with EcoRI or PstI and Southern-hybridized with the DMP1, DMP
197 containing 8 to 20 bands, when hybridized to EcoRI- or EcoRI-HaeIII-digested DNA of independent C. tr
206 ups, conserved in the active sites of EcoRV, EcoRI, PvuII, and BamHI endonucleases, suggests that lig
208 both association and catalytic phases of the EcoRI reaction, acting to change the specificity of the
209 nced by using a detector probe containing an EcoRI recognition sequence at its 5'-end that is not hom
211 as homologous templates, for insertion of an EcoRI recognition site at the RIF1 locus and introductio
212 double (pGEM-luc and pSV-beta-galactosidase) EcoRI recognition sites were imaged, and the bound enzym
213 tions of the local, internal dynamics in the EcoRI restriction binding site, -GAATTC- induced by cyti
214 created a fluorescent marker using a mutant EcoRI restriction endonuclease (K249C) that enables prol
216 dated by confirming that DNA cleavage by the EcoRI restriction endonuclease causes inversion of confi
218 kb) bound to a slide surface was digested by EcoRI restriction endonuclease, and the resulting restri
223 ndIII and tissue plasminogen activator (TPA) EcoRI restriction fragment length polymorphisms-based ge
226 sis revealed 5.5- and 2.4-kb Mu1-hybridizing EcoRI restriction fragments in all of the male-sterile a
227 The rice-pathogenic strain contained 57 EcoRI restriction fragments that hybridize to the MGR586
228 on-specific probes to interrogate a detailed EcoRI restriction map of the region, ZNF genes were foun
232 genomic DNA in cells carrying the wild-type EcoRI restriction-modification system: (a) binding to Ec
233 ferent UGPase-cDNAs with BamHI, HindIII, and EcoRI revealed that at least two mRNA populations were p
236 x of discrimination [D] = 0.995) than either EcoRI ribotyping (D = 0.950) or AscI or ApaI single-enzy
240 e contig, we determined the locations of the EcoRI, SacII, EagI, and NotI restriction sites in the cl
243 ted diffusion processes, that occur prior to EcoRI sequence recognition and subsequent to DNA cleavag
244 arental pBR322, which contains only a single EcoRI sequence, ruling out slow release of the enzyme fr
246 5 map unit) was cloned and inserted into the EcoRI site (1.0 map unit) in the late region of simian v
251 average structure and B-factors; within the EcoRI site itself, the rms deviation between the average
253 extends for 3012 nucleotides from the single EcoRI site to beyond the PstI site in the 3' long termin
254 hat occur once the enzyme has arrived at the EcoRI site, are essentially insensitive to ionic strengt
256 Semi-quantitative estimates of rates of EcoRI* site cleavage in vivo, predicted using the bindin
259 a pBR322 variant bearing two closely spaced EcoRI sites is governed by the same turnover number as h
260 iate looping of a segment of Ins that brings EcoRI sites located at -623 and +761 bp (relative to the
261 st artificial chromosomes (YACs) at specific EcoRI sites located within or adjacent to sequence-tagge
262 nce in uncloned DNA between the two terminal EcoRI sites of a YAC insert was approximately 1 Mbp larg
267 triction-modification system: (a) binding to EcoRI* sites is more probable than for wild-type enzyme
268 nity and elevated cleavage rate constants at EcoRI* sites makes double-strand cleavage of these sites
270 mmary, these mutations provide insights into EcoRI structure and function, and complement previous ge
272 The nucleotide sequence of a 7.0-kb EcoRV-EcoRI subclone was determined and found to contain open
276 GAATTC, decreases the binding free energy of EcoRI to values nearly indistinguishable from nonspecifi
277 We measured the kinetics of DNA bending by M.EcoRI using DNA labeled at both 5'-ends and observed cha
278 e substrates (GAATTT, GGATTC) of wild type M.EcoRI using fluorescence resonance energy transfer and 2
280 r amplification (Ramp), S17C BamHI and K249C EcoRI, were conjugated to oligonucleotides, and immobili
281 enetically modified form of the endonuclease EcoRI which lacks cleavage activity but retains binding
282 etween complexes of the restriction nuclease EcoRI with nonspecific DNA and with the enzyme's recogni
284 the cognate GAATTC site than does wild-type EcoRI yet displays relaxed specificity deriving from tig
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