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1 FDRs had an increased risk of CRC (hazard rate ratio [HR
2 FDRs, second-degree relatives, and first cousins of pati
3 promising genes from 10 QTLs (P </= 0.0001; FDR </= 0.10) that exhibited reproducible associations w
6 year: HR 1.21, 95% CI 1.08-1.35, P = 0.001, FDR = 0.008; 2 years: HR 1.18, 95% CI 1.06-1.32, P = 0.0
13 y different EMT protein expression (P < .05, FDR < 0.20), cell migration, glucose uptake, and hexokin
22 ant druggable genes outside the MHC, and 128 FDR-significant biological pathways related to neurons,
24 genes upon viral stimulation (p<1.00E(-15), FDR<1.00E(-14)), including various immune function and i
25 = 238; HR, 1.23; 95% CI, 1.07-1.42) or >/=2 FDRs with CRC (n = 35; HR, 2.04; 95% CI, 1.44-2.86) were
27 three cis-eQTL associations (P<1.4 x 10(-3), FDR<0.05) at 1p36 (CDC42), 1p34 (CDCA8) and 2q31 (HOXD9)
29 he 304 independent variants associated at 5% FDR in this study explain 21.2% of CAD heritability and
35 on our previous list of loci meeting the 5% FDR threshold, thus providing strong support that the re
36 Using stringent criteria (Fold change > 1.5; FDR < 0.05), three genes were found to be significantly
39 n was shown between Lachnospira and acetate (FDR-corrected P = 0.002) or butyrate (FDR-corrected P =
40 have decomposed various factors that affect FDR estimation, and illustrated the direction and extent
42 perspective, individuals with more affected FDRs should start screening earlier and at shorter inter
44 DR at any given level, we further develop an FDR-controlled MSC procedure, which combines a local FDR
46 evotella (FDR p-value = 0.03), Anaerococcus (FDR p-value = 0.07), and Dialister (FDR p-value = 0.09)
47 n status identified 27 genes (p</=0.0006 and FDR</=0.30) that responded differently to viral stimulat
48 al rare variants, whereas the Bonferroni and FDR are exceedingly over-conservative for rare variants
49 ompetitive performance in terms of power and FDR control for RNA-seq differential expression analysis
51 and bump hunting methods showed appropriate FDR control and the highest power when methylation level
52 y the bump hunting method showed appropriate FDR control and the highest power when methylation level
54 genes and 12 and eight TFs were associated (FDR-adjusted P-value <0.05) with ovarian cancer survival
57 anscript expression of seven nearby genes at FDR < 0.05 (BABAM1, DCLRE1B/PHTF1, PEX14, RAD51L1, SRGAP
63 q-value procedure and also result in better FDR control and higher stability than Storey's q-value p
65 prostate cancer and show that the bootstrap FDRs are highly useful in selecting the most robust patt
70 ed transcripts with at least twofold change (FDR corrected p < 0.05) in needle tissues in response to
72 h using a combination of RES and conditional FDR improved power of traditional GWAS for gene discover
74 the five SNPs, all identified by conditional FDR, were replicated (P < 0.05) in an independent sample
82 rolled MSC procedure is valid in controlling FDR at a prespecified level and is more powerful than th
83 d generates procedures of weakly controlling FDR, and with C > 1.22, the procedures strongly control
90 health protections were removed in 2006, DC FDR spiked in 2007-2009 versus 2004-2006 (p < 0.05), in
91 rtial lead service line replacements, and DC FDR dropped to historically low levels in 2010-2011 afte
93 s alpha4 and alpha2, nidogen 1, and decorin (FDR-adjusted P value < 10(-7)) and minor enrichment of l
97 To address the need to accurately determine FDRs for automated glycopeptide assignments, we develope
98 ococcus (FDR p-value = 0.07), and Dialister (FDR p-value = 0.09) were detected at higher relative abu
104 ro entries, and KEGG pathways were enriched (FDR <0.05) with differentially expressed genes involved
109 Among transcripts differentially expressed (FDR < 0.05) between muscle or adipose cells of insulin-s
111 ound to be overabundant by more than 2-fold (FDR corrected p-value </=0.032, fold change (log2) >/= 1
112 ound to be overabundant by more than 2-fold (FDR corrected p-value </=0.032, fold change (log2) >/= 1
113 cript in WD-fed rats (approximately 30-fold, FDR = 0.01) which supports previous literature underscor
114 lyzed using Partek Genomics Suite (1.4-fold, FDR adjusted p0.05) and Ingenuity Pathway Analysis Softw
115 19 phosphatases were upregulated (0.66-fold; FDR = 0.05) in TNBC compared with ER-positive breast can
116 ars of age: HR, 1.33; 95% CI, 1.06-1.62; for FDR >70 years of age: HR, 1.14; 95% CI, 0.93-1.45; P tre
117 ars of age: HR, 1.27; 95% CI, 0.97-1.63; for FDR 60-70 years of age: HR, 1.33; 95% CI, 1.06-1.62; for
118 power improved when gene expression data for FDR-controlled informative weighting of association test
119 sk based on age at diagnosis in the FDR (for FDR <60 years of age: HR, 1.27; 95% CI, 0.97-1.63; for F
122 late the 748 differentially expressed genes (FDR < 0.01) that were mainly enriched into mitochondrial
125 e identified both gene (99 individual genes, FDR < 0.05) and gene set (four of the six reported multi
128 ple sizes, the Bon-EV procedure has improved FDR control and stability compared with the Storey's q-v
132 boost in power with the annotation-informed FDR method, and provide insight into the genetic archite
134 cantly associated with interleukin-6 levels (FDR<0.05) after adjusting for age, sex and blood cell co
137 rolled MSC procedure, which combines a local FDR-based adaptive procedure with the MSC procedure.
142 e full list of RT-PCR tested exons, the MATS FDR estimates matched well with the experimental validat
144 ll activation (downregulated in current MDD, FDR=5.8 x 10(-5)) and IL-6 pathways (upregulated in curr
145 valuator (GPE), a tool that helps to measure FDRs in identifying glycopeptides without using a decoy
146 ssociated with purine nucleotide metabolism (FDR < 0.01), indicating an adaptation to the limited ava
147 ytomegalovirus (CMV; >4 log10 DNA copies/mL; FDR-adjusted P = .08), and presence of Epstein-Barr viru
149 h Ghanaian RVV responders and nonresponders (FDR, 0.008 vs 0.003) and Dutch infants and Ghanaian nonr
150 nt between RVV responders and nonresponders (FDR, 0.12), and Ghanaian responders were more similar to
155 hod works well for an accurate estimation of FDR in various scenarios, and we illustrate the applicat
157 DEGs affect both magnitude and precision of FDR estimation, while the correlation structure mainly a
159 s method against other SNP callers using our FDR method with three fungal genomes, finding that it wa
160 anscripts (expression difference >2-fold, p [FDR] < 0.01) after a seven-day treatment with nZnO (aver
161 group testing and regression, Porphyromonas (FDR p-value = 0.02), Prevotella (FDR p-value = 0.03), An
162 stically significantly improved predictions (FDR < 0.05) for three cancers but those quantitative gai
163 l blood of women who developed preeclampsia (FDR <0.05 in the Vitamin D Antenatal Asthma Reduction Tr
164 phyromonas (FDR p-value = 0.02), Prevotella (FDR p-value = 0.03), Anaerococcus (FDR p-value = 0.07),
168 nces between LCLs at a false discovery rate (FDR) < 0.05, which accounted for ~ 37% of the gene expre
169 cant pathways for BMD [false discovery rate (FDR) < 0.05], such as KEGG FOCAL ADHESION and KEGG AXON
173 t cis-regulated genes (false discovery rate (FDR) </= 0.05), 2,743 (12%) showed context-dependent eQT
174 significant SNPs with false discovery rate (FDR) </=0.05 were mapped to one novel gene PRPF6 and two
176 erythritol [P < 0.001, false discovery rate (FDR) = 0.0435], and the targeted assay revealed 15-fold
178 adjustment and (iii) a false discovery rate (FDR) adjustment which is widely used in transcriptome st
180 ROC) curve to minimize false discovery rate (FDR) and calculate the best thresholds based on how simu
181 location rate, and the false discovery rate (FDR) and false non-discovery rate (FNDR) of MSC can be e
183 Using the conditional false discovery rate (FDR) approach, we evaluated pleiotropy in SNPs associate
188 ing procedures such as false discovery rate (FDR) control, methods that take into account the phyloge
189 Crucial steps such as false discovery rate (FDR) control, retention time normalization and handling
190 asma adiponectin after false-discovery rate (FDR) correction (empirical P < 0.001, FDR = 0.008, famil
192 The results, at a false discovery rate (FDR) cutoff of 0.1, consisted of 44 769 and 50 792 SNP-c
196 tatus at a genome-wide false discovery rate (FDR) of 0.05, while simultaneously controlling for confo
199 nsitivity of 90% and a false discovery rate (FDR) of 3%, surpassing the performance of expression-bas
203 P- values < 8x10 - 5 ; false discovery rate (FDR) q-values < 0.01) that were much more strongly assoc
205 We used conjunction false discovery rate (FDR) to evaluate genetic pleiotropy and conditional FDR
207 ts (fold change>/=1.5, false discovery rate (FDR)</=0.3; p<0.05) compared with controls including a c
208 significant frequency (false discovery rate (FDR)<0.05) of non-silent mutations include TP53 (47.1%),
210 A total of 321 genes (false discovery rate (FDR)<5%) were differentially expressed at baseline betwe
211 ,002 proteins (at a 1% false discovery rate (FDR)) in yeast (Saccharomyces cerevisiae strain BY4741)
212 of 33 muscle mRNAs (5% false discovery rate (FDR)), six of which, linked to mitochondrial dysfunction
213 as the Bonferroni and false discovery rate (FDR), are often impractical to apply, as a majority of t
215 ating stratum-specific false discovery rate (FDR), where strata are classified according to enrichmen
216 method for estimating false discovery rate (FDR), which is a conventional significance measure in th
217 pySM, a framework for false discovery rate (FDR)-controlled metabolite annotation at the level of th
218 producer Lachnospira [false-discovery rate (FDR)-corrected P = 0.25] but decreased pro-inflammatory
228 ated miRNAs (P < 0.05, false discovery rate (FDR): 10%) were then validated in a second blinded "test
229 rotransmission system (false discovery rate (FDR)=0.0097) and the serotonergic system (FDR=0.0213).
230 ; P value adjusted for false discovery rate [FDR-P] = 0.017) and XRCC1 rs1799782 (OR, 1.57; 95% CI, 1
231 plicated 16 CpG-sites (false discovery rate [FDR] < 0.05), at 11 independent loci including MIR21.
233 ic signature (P < .05, false discovery rate [FDR] < 0.20), which was confirmed to have differences in
234 with cis-acting eQTLs (false discovery rate [FDR] <5%; P < 1.96 x 10(-5)) and 49 expression-insulin s
237 provement index (>30%; false discovery rate [FDR] corrected p < 0.0008) and nontrained WM tests after
241 ecologic study notes that fetal death rates (FDR) during the Washington DC drinking water "lead crisi
243 is tool for comparing False Discovery Rates (FDR), we include a method for determining homozygous and
248 CRC and adenomas in first-degree relatives (FDRs) and second-degree relatives and first cousins of i
254 154 and 2863 genes that were TH-responsive (FDR < 0.05) in the tilapia cerebellum, thalamus-pituitar
255 tibody-positive individuals and seronegative FDRs clustered together but separate from those of new-o
256 , subjects with autoantibodies, seronegative FDRs, and new-onset patients had different levels of the
258 is-surgery interval (48 up, 2 down; Siggenes FDR 0.05) in a manner independent of both subtype and sa
259 hway analysis, we identified 39 significant (FDR < 0.05) genes and 127 significantly (FDR < 0.05) enr
260 RNA sequencing identified five significant (FDR<0.01) and seven trending (0.01FDR<0.02) gene sets re
261 nt (FDR < 0.05) genes and 127 significantly (FDR < 0.05) enriched gene sets, which were missed by our
262 Twenty-one polymorphisms were significantly (FDR-adjusted P < 0.05) associated with mRNA expression a
264 methods have better sensitivity and similar FDR in calling heterozygous SNPs than the VarScan method
268 diagnosed with MI and 14 enriched GO terms (FDR < 0.05, enrichment > 2) were identified, including '
273 ces in risk based on age at diagnosis in the FDR (for FDR <60 years of age: HR, 1.27; 95% CI, 0.97-1.
276 l validation is not possible, minimising the FDR and improving specificity may be a preferable trade-
279 Simulation study also demonstrates that the FDR-controlled MSC procedure is valid in controlling FDR
282 vements after adaptive WMT (Global: training FDR corrected, p = 0.004), and only HIV participants imp
284 NP was detected by analyses of unconditional FDR and traditional GWAS in the discovery sample (N = 59
287 ith inclusion of index patients and untested FDRs gave the smallest bias: +2% (SD, 2%) in BRCA1 and +
288 index patients and a proportion of untested FDRs provide suitable CLTRs for carriers counseled in th
290 ) performs the simpler MTA of P-values using FDR and (ii) obtains noncentralities by back-transformin
291 = .08), and presence of Epstein-Barr virus (FDR-adjusted P = .06) in semen to be associated with det
293 are scored against the ETD data, from which FDRs can be calculated accurately based on the number of
294 predicting glucocorticoid dose of >0.9 with FDR adjusted P values in the range 3.3 E-04 -1.9 E-10.
295 cific analyses, we identified more CpGs with FDR<0.05 among female infants (n=38) than among male inf
298 ere 19 significant pathways, which withstood FDR correction for multiple testing that were identified
299 groups at 1 and 6 months after adaptive WMT (FDR corrected, p < 0.0001), with normalization of brain
300 and nontrained WM tests after adaptive WMT (FDR corrected, p </= 0.001), but not after nonadaptive W
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