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1 ble of forming four-stranded DNA structures (G-quadruplexes).
2 , via the formation of a K(+)-ion-stabilized G-quadruplex.
3 ional features, including an unknown form of G-quadruplex.
4 specifically to human telomeric antiparallel G-quadruplex.
5 cytosine across from a replication-stalling G-quadruplex.
6 ling enzymes, FANCJ partially stabilizes the G-quadruplex.
7 tive, four-stranded, helical fold known as a G-quadruplex.
8 alternative four-stranded structure known as G-quadruplex.
9 -ray crystal structures of a left-handed DNA G-quadruplex.
10 o distribute between a monomeric and dimeric G-quadruplex.
11 a stable DNA secondary structure known as a G-quadruplex.
12 ture of this peptide bound to a parallel DNA G-quadruplex.
13 ires interaction of TRF2 with a p21 promoter G-quadruplex.
14 sting selectivity for human telomeric hybrid G-quadruplex.
15 tion of various secondary structures such as G-quadruplexes.
16 orm stable four-stranded structures known as G-quadruplexes.
17 tives that can be used as optical probes for G-quadruplexes.
18 e property of individual human telomeric DNA G-quadruplexes.
19 highly stable secondary structures including G-quadruplexes.
20 emblies, such as G-ribbons, G4-quartets, and G-quadruplexes.
21 tro into non-canonical DNA structures called G-quadruplexes.
22 s in concentrated solutions of various model G-quadruplexes.
23 e, which can be used as an optical probe for G-quadruplexes.
24 rmation of perfectly aligned tetra-molecular G-quadruplexes.
25 telomeric G-quadruplex from other telomeric G-quadruplexes.
26 compound stabilizes the three existing KRAS G-quadruplexes.
27 , analogous to (but different from) that for G-quadruplexes.
28 f broadening the definition of irregular RNA G-quadruplexes, a bioinformatic search was performed to
31 monstrate the formation of a parallel folded G-quadruplex and a B-form duplex DNA stacked coaxially.
32 pregnanol derivatives that recognize the MYC G-quadruplex and BCL2 i-motif promoter DNA structures lo
33 iosis-specific DSBs fold into intramolecular G-quadruplex and i-motif structures, both in vitro and i
34 monstrate mutual exclusivity between the MYC G-quadruplex and i-motif, providing a rationale for a mo
36 lve diverse DNA structures (duplex, hairpin, G-quadruplex and single-stranded), ligand types (ion, sm
37 selectively stabilize human telomeric hybrid G-quadruplex and strongly inhibit telomerase activity wi
38 These studies show that T-oligo can form a G-quadruplex and that the antitumor effects of T-oligo m
39 ce formed between putative parallel stranded G-quadruplexes and a duplex DNA sequence constructed fro
40 show increased selectivity toward the viral G-quadruplexes and display remarkable antiviral activity
41 ion translated into stabilization of the LTR G-quadruplexes and increased promoter silencing activity
42 cur near G-rich sequences capable of forming G-quadruplexes and JBP2 is needed, as it does not occur
43 ribe the mechanism by which FANCJ recognizes G-quadruplexes and mediates their stepwise unfolding, bu
45 (DSB) in Saccharomyces cerevisiae folds into G-quadruplex, and the C-rich sequence complementary to t
47 de insight into the sequence requirements of G-quadruplexes, and should facilitate the analysis of su
53 RNA-binding protein footprints revealed that G quadruplexes are enriched in heterogeneous nuclear rib
56 rginine to L-citrulline by a series of hemin/G-quadruplex-arginine aptamer conjugated nucleoapzymes.
57 plex at the 5'-end, followed by the stronger G-quadruplex at the 3'-end via various intermediates.
58 then proceeded through disrupting the weaker G-quadruplex at the 5'-end, followed by the stronger G-q
59 two guanine electron donors into crystalline G-quadruplex-based organic frameworks, wherein the elect
61 ion termination due to formation of a hybrid G-quadruplex between the nascent RNA and the nontemplate
62 cetamidine-containing side chains (CATDs) as G-quadruplex binders and have examined their anticancer
66 chanistic insight, we studied the effects of G-quadruplex-binding ligands on hTERT expression and obs
70 thermal, pH (i-motif), K(+) ion/crown ether (G-quadruplexes), chemical (pH-doped polyaniline), or bio
71 at least 6 cycling times by heat to transfer G-quadruplex conformation to single strand of DNA sequen
73 Folding of the LTR promoter into dynamic G-quadruplex conformations has been shown to suppress it
74 ng of an NMS construct and that of truncated G-quadruplex constructs revealed a quadruplex-quadruplex
76 on (EMT)-associated CD44 isoform switch in a G-quadruplex-dependent manner, which results in inhibiti
77 to screen for small molecules able to induce G-quadruplex-dependent transcriptional reprogramming.
82 to 10-fold and on bimolecular anti-parallel G-quadruplex DNA structures and three-stranded D-loop ap
84 retains limited accessibility, of telomeric G-quadruplex DNA to complementary single stranded DNA an
85 Since then, the number of studies reporting G-quadruplex DNA unfolding by helicase enzymes has rapid
86 ateral elements, exhibits strong affinity to G-quadruplex DNA, it displays a much weaker affinity for
88 ther substrates such as replication fork and G-quadruplex DNA, triplex DNA was a preferred substrate
91 hen, the assembly of antibody and alkylthiol/G-quadruplex DNA/hemin on gold nanoparticles was used as
94 ticles (MNPs) as supporting matrix and hemin/G-quadruplex DNAzyme as signal amplifier for determinati
95 e colorimetric determination system based on G-quadruplex DNAzyme integrated with a smartphone was de
96 DNA present in a sample, by exposing a hemin/G-quadruplex DNAzyme, which then catalyzes the generatio
100 iazole rings shows higher affinity for c-MYC G-quadruplex, exhibits fluorescence "turn-on" response w
102 of the duplex to unmask the PQS, adopting a G-quadruplex fold in which apurinic/apyrimidinic endonuc
104 es that govern the formation of stable Tel22 G-quadruplexes, folding intermediates, and ligand-quadru
105 hate footprinting revealed some evidence for G-quadruplex formation in (G3T)n sequences, this was not
106 molecule strongly stabilized and accelerated G-quadruplex formation in both Na(+) and K(+) ion-contai
108 rnative DNA structures, we have investigated G-quadruplex formation within negatively supercoiled DNA
110 es: (i) the intramolecular parallel-stranded G-quadruplex formed by the 22-mer four-repeat human telo
112 Our investigation has been performed for G-quadruplexes formed by folding of GGG(TTAGGG)3 single
113 cribe not only the basic structural motif of G-quadruplexes formed by, e.g., telomeric DNA sequences,
114 t high-affinity compounds that bind putative G-quadruplex forming sequences only rarely have a high d
115 Here we demonstrate that RNA elements with G-quadruplex-forming capacity promote exon inclusion.
117 of sequences but can also be found for other G-quadruplex-forming motifs, arguing for widespread appl
118 wth, which helps explain why we detected few G-quadruplex-forming regions in bacterial transcriptomes
120 when OG is formed in guanine-rich, potential G-quadruplex-forming sequences (PQS) in promoter-coding
126 mall-molecule optical probe (DAOTA-M2) and a G-quadruplex from the promoter region of the c-myc oncog
127 een proposed that expanded transcripts adopt G-quadruplex (G-Q) structures and associate with protein
130 WRN RECQ helicase protein binds and unwinds G-quadruplex (G4) DNA substrates in vitro, and we identi
134 ro presence of a stable secondary structure, G-quadruplex (G4) in the 5' UTR of P1-HNF4A, the predomi
139 MYC's promoter is governed by a higher order G-quadruplex (G4) structure in the NHE III1 region.
142 hysical properties typically associated with G-quadruplex (G4) structures render them a significant b
143 Guanine rich nucleic acid sequences can form G-quadruplex (G4) structures that interfere with DNA rep
145 econdary, four-stranded DNA structure termed G-quadruplex (G4), which has been implicated in genomic
150 de chains was designed to target DNA and RNA G-quadruplexes (G4) in the promoter and 5'-UTR mRNA of t
153 r complex (Pt-DA) has been incorporated into G-quadruplex G4K(+) borate hydrogels by using borate est
162 ions between the human telomeric RNA (TERRA) G-quadruplex (GQ) and its ligands, it was found that the
170 ps or non-canonical DNA structures including G-quadruplexes has been proposed as the major underlying
171 knowledge about the structural properties of G-quadruplexes has helped to design and develop a repert
172 The structural and topological diversity of G-quadruplexes have attracted great attention for decade
175 talline phase behaviors of two other related G-quadruplexes: (i) the intramolecular parallel-stranded
178 with strong G/C skew and propensity to form G-quadruplex in non-template DNA, corroborating with all
179 on governed by the EF1a interaction with the G-quadruplex in the NRF2 5' UTR during oxidative stress.
182 g from enhanced eIF4A-dependent unwinding of G-quadruplexes in the 5' untranslated region of GW182 mR
183 h-order DNA structures into two constituting G-quadruplexes in the promoter of the human telomerase r
185 of mammalian RNA regions that can fold into G-quadruplexes in vitro, but in contrast to previous ass
186 d the identification and characterization of G-quadruplexes in vivo as well as in vitro, and at a muc
188 hanical and thermodynamic stabilities of the G-quadruplex inside the nanocage increase with decreasin
189 or molecularly crowded buffer solutions, the G-quadruplex inside the nanocage is significantly more s
190 plicational or co-transcriptional folding of G-quadruplex inside the polymerase machinery in cells.
191 ,2,3-de]quinazoline, was found to be a novel G-quadruplex interactive agent that interfered with tran
194 clearly demonstrate that what defines a RNA G-quadruplex is much broader than what we previously bel
196 ign of ligands targeting human telomeric DNA G-quadruplexes is a complex problem due to the structura
197 e compound on the Mid-region i-motif and the G-quadruplexes leads to downregulation of KRAS gene expr
198 we demonstrate that three of the most potent G-quadruplex ligands (360A, Phen-DC3, and pyridostatin)
199 lity to perform high-throughput screening of G-quadruplex ligands for the development of drug molecul
201 ce of DNA secondary structures, specifically G-quadruplex-like DNA, within the CTD coding region.
202 igoguanine motifs at their 5'-ends, assemble G-quadruplex-like structures and interact with the trans
203 matic search was performed to find potential G-quadruplexes located in the untranslated regions of hu
206 otif for specific interactions with guanine (G)-quadruplexes, mRNA elements implicated in the disease
207 by small-molecule-mediated stabilization of G-quadruplex nucleic acid secondary structures triggers
208 esses occurring at specific locations within G-quadruplex nucleic acids, providing valuable probes fo
211 up to form unique DNA secondary structures: G-quadruplexes on the G-rich strand and i-motifs on the
214 by ectopic oncogenic expression of cyclin E, G-quadruplexes, or R-loop formation facilitate the ALT p
215 nism of hTERT epigenetic control involving a G-quadruplex promoter motif, which potentially can be ta
217 e structural basis for tight gold(I) complex/G-quadruplex recognition and its selectivity are describ
218 However, the structural basis for specific G-quadruplex recognition by proteins has not been unders
219 ndria, transcription termination events at a G-quadruplex region near the replication origin are thou
220 quencing (rG4-seq), a transcriptome-wide RNA G-quadruplex (rG4) profiling method that couples rG4-med
223 several G4 motifs capable to form stable RNA G-quadruplex (RG4) structures that can serve as targets
225 xafluoroisopropanol mixture highly increased G-quadruplex sensitivity with no modification of the phy
230 rmore, we demonstrated that mutating PIF1, a G-quadruplex-specific helicase, results in increased CTD
235 These results suggest a potential role for G-quadruplex stabilizers in the treatment of KSHV-associ
236 tigation led to the identification of potent G-quadruplex stabilizers with high selectivity over dupl
239 endency to obstruct DNA replication, we used G-quadruplex stabilizing compounds to examine their effe
245 exit channel to prevent formation of the RNA G-quadruplex structure required for termination and thus
246 of ATP, the ATP-binding aptamer folds into a G-quadruplex structure that is resistant to Exo I digest
248 Although different ions can stabilize a G-quadruplex structure, the preferred bound ions are typ
249 in aqueous-media, which first implements the G-quadruplex structure-switching biosensing principle in
250 verify the signaling principle competency of G-quadruplex structure-switching in graphene electronic
253 e, N-Methyl mesoporphyrin IX, binds to these G-quadruplex structures and generates significantly ampl
254 guanine-rich oligonucleotides, non-canonical G-quadruplex structures are based on G-quartets formed b
257 says reveal that the POT1-TPP1 complex binds G-quadruplex structures formed in buffers containing Na(
258 an affinity that is fivefold higher than for G-quadruplex structures formed in the presence of K(+).
260 selected derivatives have been shown to trap G-quadruplex structures in the nucleus of cancer cells.
261 repeats of the sequence d(TTAGGG) that form G-quadruplex structures made of stacked guanines with mo
263 ts provide further support for the idea that G-quadruplex structures may have a critical role in tran
264 ediether (Sd) hole acceptor separated by DNA G-quadruplex structures possessing 2-to-4 tetrads by mea
265 nucleolin is able to specifically recognize G-quadruplex structures present in the LTR promoter.
266 sequences in nucleic acids can assemble into G-quadruplex structures that involve G-quartets linked b
267 n telomere DNA fragments fold into different G-quadruplex structures with parallel, hybrid, and antip
268 a neuroblastoma cell line, in particular at G-quadruplex structures, and recombinant CSB can melt G-
277 rescence lifetimes are observed in vitro for G-quadruplexes than for double- and single-stranded nucl
278 e investigate the sequence requirements of a G-quadruplex that can both bind GTP and promote peroxida
279 h hole sharing among the guanines within the G-quadruplex that is kinetically competitive with the fo
282 s were recently developed to track and label G-quadruplexes: these higher-order nucleic acid structur
283 ater binding preference towards DNA than RNA G-quadruplexes, thus indicating two levels of selectivit
284 duce conformational changes of telomeric DNA G-quadruplexes to an antiparallel structure (as determin
285 quadruplexes, the parallel-stranded Pu24-myc G-quadruplex, to which Phen-DC3 is known to bind by end-
287 ondary structure is substantially faster for G-quadruplex topologies formed in the presence of Na(+)
290 Finally, we compare the mesophases of the G-quadruplexes, under PEG-induced crowding conditions, w
292 Introducing the term 'clustered damage to G-quadruplexes' we report here on the structural effects
293 dulate translation in cellulo Some irregular G-quadruplexes were observed to either promote or repres
294 a robust machinery that globally unfolds RNA G-quadruplexes, whereas some bacteria have instead under
295 ture can result in the unfolding of existing G-quadruplexes which can lead to telomere shortening.
296 induce targeted mechanical unfolding of the G-quadruplex while leaving the nanocage unperturbed.
297 click-chemistry coupling, we sandwiched one G-quadruplex with two dsDNA handles while leaving the ot
298 g both human telomeric and oncogene promoter G-quadruplexes with different folding topologies as targ
299 e revealed multiple motifs predicted to form G-quadruplexes, with the greatest potential detected for
300 study on oxidative damage of human telomere G-quadruplexes without mediation of external molecules.
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