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1 GAA expansions were evaluated by polymerase chain reacti
2 GAA induces antioxidative response and inhibits accumula
3 GAA is implemented in OO perl and is available here: htt
4 GAA maturation increases its affinity for glycogen by 7-
5 GAA peptide vaccination in children with gliomas is gene
6 (GAA)n*(TTC)n repeats were cloned into bacterial plasmids
7 GAAs for these peptides are EphA2, interleukin (IL)-13 r
8 GAAs were EphA2, interleukin-13 receptor alpha 2 (IL-13R
9 mic DNA were noted with Cervista (P=0.0015), GAA treatment had no significant effects on Aptima HPV s
10 epeats in the frataxin (FXN) gene: every 100 GAA repeats on the smaller repeat allele was associated
15 s a molecular model of FRDA by inserting 560 GAA*TTC repeats into an intron of a GFP reporter minigen
16 individuals are compound heterozygous for a GAA expansion and a FXN point/insertion/deletion mutatio
17 ed in almost all cases by homozygosity for a GAA trinucleotide repeat expansion in the frataxin gene.
19 FRDA patients, 26 heterozygous carriers of a GAA expansion, and 53 controls underwent oral and intrav
21 ity of FRDA mutations involve expansion of a GAA*TTC-repeat tract in intron 1, which leads to an FXN
22 N) that results from low FXN levels due to a GAA triplet repeat expansion or, occasionally, from miss
24 eta-linked polyamide programmed to target a (GAA)3 repeat yielded a CSI microarray-derived sequence m
25 afirin was dissolved in glacial acetic acid (GAA) and simple coacervation was performed by rapid addi
26 mpounds and identified gossypol acetic acid (GAA) as a potent inhibitor of oxidative stress-induced R
27 s can be facilitated by glacial acetic acid (GAA) treatment of primary liquid-based collections to re
28 cytology processing and glacial acetic acid (GAA) treatment, may occur prior to the arrival of specim
29 thermal properties of guanidinoacetic acid (GAA) and its aqueous solutions have been performed to te
30 us expansion of the guanine-adenine-adenine (GAA) repeats in intron 1 of the FXN gene leading to tran
32 cific gene subset enriched for AAA, CAA, and GAA codons is impaired in the absence of URM1- and ELP-d
34 t tracts (CTG)n, (CAG)n, (CGG)n, (CCG)n and (GAA)n, are associated with diseases including myotonic d
36 analysis in 21 children showed positive anti-GAA immune responses in 13: to IL-13Ralpha2 in 10, EphA2
37 he GAA activity in plasma and prevented anti-GAA antibody formation in immunocompetent GAA-knockout m
38 etic peptides for glioma-associated antigen (GAA) epitopes and administration of polyinosinic-polycyt
39 DC1s loaded with glioma-associated antigen (GAA)-derived CTL epitope peptides prolonged the survival
40 fied a series of glioma-associated antigens (GAAs) commonly overexpressed in pediatric gliomas, we in
46 originated from naturally occurring DSBs at (GAA)n microsatellites in Saccharomyces cerevisiae These
49 was not dependent on the presence of 12-copy GAA trinucleotide repeats in the promoter region and did
54 ataxia (FRDA) are homozygous for an expanded GAA triplet repeat (GAA-TR) mutation in intron 1 of the
55 reich ataxia (FRDA) is caused by an expanded GAA triplet-repeat (GAA-TR) mutation in the FXN gene.
56 t inherited ataxia, is caused by an expanded GAA triplet-repeat sequence in intron 1 of the FXN gene.
57 ure and formation of triplex DNA at expanded GAA TTC repeats have been shown to regulate the FXN gene
58 Among 133 patients homozygous for expanded GAA repeats, the mean (SD) age was 31 (10) years (age ra
62 ence of heterochromatin at the long expanded GAA TTC repeats, which is enriched in hypoacetylated his
63 We demonstrate that the presence of expanded GAA repeats recapitulates the epigenetic modifications a
65 a model system, we demonstrate that expanded GAA/TTC repeats represent a threat to eukaryotic genome
67 analyze somatic instability of the expanded GAA triplet-repeat sequence in multiple tissues obtained
68 Thus, somatic instability of the expanded GAA triplet-repeat sequence may contribute directly to d
69 pressive chromatin spreads from the expanded GAA triplet-repeat sequence to cause epigenetic silencin
70 r objective was to test whether the expanded GAA triplet-repeat sequence undergoes further expansion
71 both upstream and downstream of the expanded GAA triplet-repeat sequence, without any change in trans
73 ive epigenetic modifications at the expanded GAA-FXN locus may lead to NL relocation, where further r
74 pressive chromatin extends from the expanded GAA-TR in intron 1 to the upstream regions of the FXN ge
78 eam (R(2) = 0.89, p = 0.002) of the expanded GAA-TR mutation, suggesting that FXN promoter silencing
82 om deficient elongation through the expanded GAA-TR sequence because of repeat-proximal heterochromat
84 utation in Friedreich ataxia is an expanded (GAA*TTC)n sequence, which is highly unstable in human so
85 Friedreich ataxia is caused by an expanded (GAA*TTC)n sequence, which is unstable during intergenera
86 hile it is generally believed that expanded (GAA)n repeats block transcription elongation, fine mecha
87 We examined instability of the expanded (GAA*TTC)(n) sequence in mammalian cells by analyzing ind
88 iness of the RNA polymerase within expanded (GAA)n runs but was not accompanied by the enzyme's disso
89 mouse and a transgenic line (MTP) expressing GAA only in skeletal muscle, as well as a detailed analy
90 no-associated virus (AAV)9 vector expressing GAA (AAV9-hGAA) into the tibialis anterior muscle of Gaa
91 ere we describe the development of the first GAA-expanded FXN genomic DNA reporter model of FRDA.
92 ulfite sequence analysis of the FXN flanking GAA regions reveals a shift in the FRDA DNA methylation
93 esults, 21.9% reverted to negative following GAA treatment; the correlate value was 2.7% for Aptima H
96 ough yeast and reporter construct models for GAA.TTC triplet-repeat expansion have been reported, stu
108 acterized by lack of acid-alpha glucosidase (GAA) resulting in ubiquitous lysosomal glycogen accumula
109 ng lysosomal enzyme acid alpha -glucosidase (GAA) (also called "acid maltase"), causes death in early
110 n-hydrolyzing enzyme acid alpha-glucosidase (GAA) activity, which results in lysosomal glycogen accum
111 acement therapy with acid alpha-glucosidase (GAA) has achieved only partial efficacy in Pompe disease
112 aded in lysosomes by acid alpha-glucosidase (GAA) in mammals, but it is unclear why and how glycogen
114 the lysosomal enzyme acid alpha-glucosidase (GAA) with recombinant GlcNAc-phosphotransferase and unco
115 ysosomal delivery of acid alpha-glucosidase (GAA), the enzyme deficient in patients with Pompe diseas
117 acement therapy with acid alpha-glucosidase (GAA), which has been attributed to inefficient cation-in
120 that proton transfer from guanidinoacetate (GAA) to Asp-134 and methyl transfer from S-adenosyl-L-me
121 hment and concentration of guanidinoacetate (GAA) and creatine in plasma sample for kinetic studies i
123 g sequence unaffected and (iii) heterozygous GAA*TTC expansion carriers with approximately 50% decrea
125 eich ataxia (FRDA) is caused by a homozygous GAA repeat expansion mutation within intron 1 of the FXN
129 ting that liver-specific expression of human GAA with the AAV vector would induce immune tolerance an
132 acement therapy (ERT) with recombinant human GAA was demonstrated during clinical trials that prolong
133 surrounding the cleavage site revealed human GAA contains histidine at 201 while other species contai
135 ut mice by 6 wk after a challenge with human GAA and Freund's adjuvant; in contrast, administration o
136 e-mRNA at a region upstream of hyperexpanded GAA repeats in FRDA and control cells, indicating simila
137 ein, we analyze the effects of hyperexpanded GAA repeats on transcription status and chromatin modifi
138 modifications associated with hyperexpanded GAA repeats are independent of initiation and progressio
142 ti-GAA antibody formation in immunocompetent GAA-knockout mice for 18 wk, predicting that liver-speci
144 he lack of effectiveness from clenbuterol in GAA-KO mice that lacked CI-MPR in muscle, where it faile
145 IR showed that when kafirin was dissolved in GAA its alpha-helical conformation increased substantial
147 de (Glc4), a urinary biomarker, was lower in GAA-KO mice following combination therapy, compared with
148 Dissociation of the kafirin molecules in GAA, assuming a alpha-helical conformation may have enha
149 urther characterized the role of MutSbeta in GAA.TTC expansion using a functional assay in primary FR
152 RNA.DNA hybrids have a potential role in GAA.TTC tract instability and in the mechanism underlyin
153 tudy demonstrated that knockdown of Stbd1 in GAA knock-out mice did not alter lysosomal glycogen stor
155 to bind and thermostabilize GAA and increase GAA translocation to lysosomes in both wild-type and Pom
157 ne therapy induced a tolerance to introduced GAA, and this strategy could enhance the efficacy of ERT
158 rited ataxia caused primarily by an intronic GAA.TTC triplet repeat expansion in the frataxin (FXN) g
163 In most Friedreich ataxia patients, a large GAA-repeat expansion is present within the first intron
164 riedreich's ataxia (FRDA) is caused by large GAA expansions in intron 1 of the frataxin gene (FXN), w
178 bust antibody response was provoked in naive GAA-knockout mice by 6 wk after a challenge with human G
180 s most effective, whereas late correction of GAA expression was not effective in modifying parameters
182 n of this GC 5'ss required a high density of GAA/CAA-containing splicing enhancers in the exonized se
185 It was found that isotopic enrichment of GAA reached a plateau by 30min of infusion of [1-(13)C]g
186 a (FRDA) is caused by biallelic expansion of GAA repeats leading to the transcriptional silencing of
188 We found that the rates of expansions of GAA repeats increased exponentially with their lengths.
189 ataxia (FRDA) is caused by hyperexpansion of GAA*TTC repeats located in the first intron of the FXN g
190 ty of an Aptima HPV result is independent of GAA treatment and routine automated cytology processing.
192 r lysosomal glycogen content to the level of GAA knock-out mice, as did a mutant lacking the Atg8 fam
197 was inversely correlated with the number of GAA repeats in the frataxin (FXN) gene: every 100 GAA re
200 type correction, specifically restoration of GAA to skeletal muscle and the nervous system for treatm
201 were estimated and discussed in the scope of GAA self-aggregation in aqueous solutions using experime
202 ated uptake and intracellular trafficking of GAA during muscle-specific GAA expression with an adeno-
203 ed CI-MPR-mediated uptake and trafficking of GAA in mice with Pompe disease, and a similarly enhanced
204 lenbuterol treatment enhanced trafficking of GAA to lysosomes, given that GAA was expressed within my
208 lyzing the formation of nucleosome arrays on GAA TTC-containing plasmids, the triplex structure was s
209 causes extensive RNA.DNA hybrid formation on GAA.TTC templates in bacteria as well as in defined tran
210 brain, cerebellum and heart tissues from our GAA repeat expansion-containing FRDA YAC transgenic mice
211 FXN, there are a number of other polymorphic GAA/TTC loci in the human genome where the size variatio
212 Small pool PCR analysis showed that pure (GAA.TTC)44+ sequences at the FXN locus are unstable in s
213 mozygous for an expanded GAA triplet repeat (GAA-TR) mutation in intron 1 of the FXN gene, which resu
215 emonstrate that AAV9-hGAA is able to replace GAA to the affected tissue and modify AChR mRNA expressi
216 vely enables transcription across repressive GAA repeats that silence frataxin expression in Friedrei
219 c expansions of the triplet-repeat sequence (GAA.TTC) cause transcriptional repression of the Frataxi
221 ion, the DNA sequence of the CudA half site, GAA, is identical to metazoan STAT half sites, although
222 XN gene (pBAC-FXN-Luc) and replacing the six GAA repeats present in the vector with an approximately
223 nt on smaller, so-called 'pre-mutation' size GAA.TTC repeats, that do not cause disease, but are pron
225 ar trafficking of GAA during muscle-specific GAA expression with an adeno-associated virus (AAV) vect
227 ontain a conserved 10-bp motif (GAAAAG(C)/(T)GAA), and that deletion of these repeats results in a lo
229 the lysosome, the mature form of GILT-tagged GAA was indistinguishable from rhGAA and persisted with
232 because synthetic nucleic acids that target GAA repeats can be lead compounds for restoring curative
234 nst at least one of the vaccination-targeted GAAs in peripheral blood mononuclear cells in 58% of pat
235 ecific pyrrole-imidazole polyamide targeting GAA.TTC triplet-repeat DNA partially blocked repeat expa
238 nd solubility measurements, it is found that GAA is more thermally stable but less soluble comparing
241 with and without GAA treatment, we show that GAA treatment significantly reduces genomic DNA content
242 r localization in single cells, we show that GAA-expanded repeats decrease the number of FXN mRNA mol
244 measurements for the GAA TTC duplex and the GAA GAA TTC triplex, and on the effect of histone acetyl
245 NAs derived from the human FXN gene, and the GAA GAA TTC triplex, were examined for their ability to
249 compelling evidence for the link between the GAA expansion, the DNA methylation profile, FXN expressi
250 order structure as a fragment containing the GAA-repeat expansion showed an increased interaction fre
251 ining a liver-specific promoter elevated the GAA activity in plasma and prevented anti-GAA antibody f
253 Nase I accessibility in regions flanking the GAA repeats in patients was decreased compared with heal
254 he first direct binding measurements for the GAA TTC duplex and the GAA GAA TTC triplex, and on the e
255 in CAG.CTG repeat expansion, its role in the GAA.TTC expansion of Friedreich ataxia (FRDA) is less cl
256 lation of specific CpG sites upstream of the GAA repeat and histone modifications in regions flanking
261 se arrests in the promoter distal end of the GAA.TTC tract and an extensive RNA.DNA hybrid is tightly
263 nor the effect of histone acetylation on the GAA TTC duplex or the GAA GAA TTC triplex has been measu
265 ompared to the pUC control DNA) and that the GAA GAA TTC triplex further lowers the nucleosome assemb
266 reconstitution assays demonstrated that the GAA TTC duplex excludes nucleosomes (53% decrease compar
267 his comprehensive analysis revealed that the GAA-induced silencing effect does not influence expressi
268 led with high-throughput sequencing that the GAA-repeat expansion in FRDA cells stimulates a higher-o
270 othesis is that structures formed within the GAA.TTC repeat during transcription attract DNA repair e
271 scular disorder caused by expansions of the (GAA)n repeat in the first intron of the frataxin gene.
272 hypothesized that genetic stability of the (GAA*TTC)n sequence may require efficient RecA-dependent
276 of replication is known to occur within the (GAA*TTC)n sequence when GAA is the lagging strand templa
277 bitors are shown to bind and thermostabilize GAA and increase GAA translocation to lysosomes in both
278 xon of the B19V pre-mRNA is defined by three GAA motif-containing exonic splicing enhancers and a G/G
283 rate in vitro and large-scale trinucleotide (GAA)n repeat expansions in vivo, implying failed phospha
284 to analyze large-scale expansions of triplet GAA repeats responsible for the human disease Friedreich
288 odegenerative disorder caused by an unstable GAA repeat expansion mutation within intron 1 of the FXN
291 hat the increase in genetic instability when GAA serves as the lagging strand template is seen in Rec
292 ted significantly increased instability when GAA was the lagging strand template in strains that were
293 to occur within the (GAA*TTC)n sequence when GAA is the lagging strand template, we hypothesized that
295 d in Escherichia coli are more unstable when GAA is the lagging strand template, suggesting erroneous
296 age and by 60% at 13 months as compared with GAA knock-out mice, indicating that the transport of gly
297 degree of frataxin reduction correlates with GAA.TTC tract length, but the mechanism of reduction rem
298 ilot study of subcutaneous vaccinations with GAA epitope peptides in HLA-A2-positive children with ne
299 med on 465 tandem specimens with and without GAA treatment, we show that GAA treatment significantly
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