ライフサイエンスコーパス: GenBank

1 inst authenticate published ITS sequences in GenBank.

2 390 full-length human HCV 1a sequences from GenBank.

3 ifies itself and nothing else in a search of GenBank.

4 lar to any genes with annotated functions in GenBank.

5 y annotation namespaces, e.g. KEGG or NCBI's GenBank.

6 ing for the deposition of 4,850 sequences to GenBank.

7 uated by testing from 27 to 240 genomes from GenBank.

8 capsid sequence from 56 strains available in GenBank.

9 up of randomly selected Ig heavy chains from Genbank.

10 ions were stable across successive builds of GenBank.

11 cs sites and community data archives such as GenBank.

12 the cloned fragments with the nr-database in Genbank.

13 en the compared RH1 sequences and those from GenBank.

14 t GenBank table files prior to submission to GenBank.

15 nces were identified, 3 of which were not in GenBank.

16 he 11 complete genome sequences available in GenBank.

17 g maize DNA sequences currently available in GenBank.

18 ster virus have been published and listed in GenBank.

19 l databases, such as EntrezGene, UniProt and GenBank.

20 All known sequences were extracted from GenBank.

21 at the protein level with other sequences in GenBank.

22 um, and its sequences have been deposited in GenBank.

23 (UniProt) and the associated mRNA data from Genbank.

24 otein that has no apparent homologues within GenBank.

25 454 technology, but that lacked orthologs in GenBank.

26 is maintained in collaboration with DDBJ and GenBank.

27 The sequences have been deposited in GenBank.

28 were carried out with sequences deposited in GenBank.

29 the common files required for submission to GenBank.

30 a clonal activating point mutation in HRAS (GenBank 3265) (c.37G-->C) in the Spitz nevi and underlyi

31 The apolipoprotein E (APOE [GenBank, 348; OMIM, 107741]) epsilon4 allele is a common

32 One of these lncRNAs, SPRY4-IT1 (GenBank accession ID AK024556), is derived from an intro

33 RNA gene sequencing as Segniliparus rugosus (GenBank accession no. AY 60892).

34 We have cloned two cDNAs, XPLAC (GenBank accession no. AY589511) and XTES (GenBank access

35 C (GenBank accession no. AY589511) and XTES (GenBank accession no. AY989815), which are closely relat

36 nes encoding COMT, designated Mdomt1-Mdomt5 (GenBank accession nos.

37 as an environmental stress-responsive gene (GenBank accession number AL049644.1, locus spcc191.01).

38 novel human PKCdelta isozyme, PKCdeltaVIII (Genbank accession number DQ516383) in human teratocarcin

39 GenBank accession number for Danio rerio disc1: EU273350

40 K14-vGPCR/ORF74 mRNA, terminating at 130873 (GenBank accession number GQ994935), resulting in an appr

41 herin 15 CD3 pointed to amino acids 158-179 (GenBank accession number XP_238200), with homology to th

42 ctional risk variant, named BV677278 for its GenBank accession number, for RD in DCDC2.

43 ers for the gene(s) of interest, such as by: GenBank accession number, NCBI protein accession number,

44 tently matched to B. anthracis plasmid pX02, GenBank accession numbers AF188935.1, AE011191.1, and AE

45 ne abstracts using sequence ID lists such as GenBank accession numbers derived from high-throughput e

46 Supplementary data, including GenBank Accession numbers, are available at Bioinformati

47 are referenced by clone numbers or 16S rRNA GenBank accession numbers, often without taxonomic ancho

48 ther identifiers, such as specimen codes and GenBank accession numbers, to link otherwise disconnecte

49 were annotated, of which 19,786 have unique GenBank accession numbers.

50 GenBank accession numbers: DISC1FP1 (EU302123), Boymaw (

51 GenBank Accession Numbers: FJ010164-FJ010174.

52 GenBank Accession Numbers: GQ850461-GQ850464.

53 GenBank accession numbers: KF041446, KF041447, KF041448,

54 Their sequences were deposited in GenBank [accession numbers GQ465348 to GQ465370].

55 rature, online reports, strain archives, and GenBank accessions.

56 romosome 19p13 to which NTE had been mapped (GenBank AJ004832).

57 ed by the yeast Yarrowia lipolytica (YLLIP2; GenBank: AJ012632) might be used in PERT.

58 of a Lingulodinium EST dataset deposited in GenBank and 94% of the enzymes in 16 primary metabolic K

59 he species and sequences present in the NCBI GenBank and allows for a single step classification of m

60 ific community, prediction, propagation from GenBank and curation by NCBI staff.

61 atabases, and remote sequence retrieval from GenBank and dbSNP.

62 orted at this position in all mammals in the GenBank and Ensembl databases, with arginine reported in

63 Based on the sequences published in GenBank and Ensembl, we designed specific primers and de

64 plished by querying public databases such as GenBank and examining the geospatial metadata in the rec

65 development of central repositories such as GenBank and Gene Expression Omnibus.

66 Unlike other NCBI databases, such as GenBank and Gene, which have a strict data structure, bo

67 l that we use to flag sequences from type in GenBank and in Genomes.

68 Entrez database, Entrez Nucleotide, includes GenBank and is tightly linked to the NCBI Taxonomy datab

69 To access GenBank and its related retrieval and analysis services,

70 To access GenBank and its related retrieval and analysis services,

71 To access GenBank and its related retrieval and analysis services,

72 To access GenBank and its related retrieval and analysis services,

73 To access GenBank and its related retrieval and analysis services,

74 To access GenBank and its related retrieval and analysis services,

75 To access GenBank and its related retrieval and analysis services,

76 To access GenBank and its related retrieval and analysis services,

77 ysis and retrieval resources for the data in GenBank and other biological data available through NCBI

78 ysis and retrieval resources for the data in GenBank and other biological data made available through

79 ysis and retrieval resources for the data in GenBank and other biological data made available through

80 ysis and retrieval resources for the data in GenBank and other biological data made available through

81 ysis and retrieval resources for the data in GenBank and other biological data made available through

82 ysis and retrieval resources for the data in GenBank and other biological data made available through

83 AST provides sequence similarity searches of GenBank and other sequence databases.

84 AST provides sequence similarity searches of GenBank and other sequence databases.

85 AST provides sequence similarity searches of GenBank and other sequence databases.

86 AST provides sequence similarity searches of GenBank and other sequence databases.

87 AST provides sequence similarity searches of GenBank and other sequence databases.

88 AST provides sequence similarity searches of GenBank and other sequence databases.

89 AST provides sequence similarity searches of GenBank and other sequence databases.

90 AST provides sequence similarity searches of GenBank and other sequence databases.

91 AST provides sequence similarity searches of GenBank and other sequence databases.

92 AST provides sequence similarity searches of GenBank and other sequence databases.

93 p up with the continuous flow of new data in GenBank and RefSeq.

94 quences reported in this study) available in GenBank and reported from 23 countries were characterize

95 s of those managing public databases such as GenBank and SwissProt.

96 agenomic search by extracting sequences from GenBank and the 1000 Genomes Project.

97 aking advantage of the exponential growth of GenBank and the creation of NCBI's RefSeq database, we h

98 because of the large number of sequences in GenBank and the large number of highly similar paralogue

99 0 complete bacterial genomes and plasmids in GenBank and were capable of detecting 82% of the ISs and

100 pared to all complete sequences available in GenBank, and haplotype analysis demonstrated 92 haplotyp

101 tent with the corresponding information from GenBank, and produced better performance compared to exi

102 on, 3615 genome sequences occupying 56 MB in GenBank are compressed down to only 167 KB, achieving a

103 EST sequence accession numbers in GenBank are EH 795234 through EH 995233 and EL 000001 th

104 id not resemble any known phage sequences in GenBank as of August 2006.

105 34 420 nifH sequences were identified in GenBank as of November 20, 2012.

106 seen R and the Gene Ontology join BLAST and GenBank as the main components in bioinformatics process

107 rresponding to a gene currently annotated in Genbank as TSGA2 homolog (mouse) to signify 'testis spec

108 0% of cDNA and mRNA sequences contributed to GenBank before the patent application was filed also con

109 Bear Paw; a finding consistent with those of Genbank BLAST.

110 corrected sample dates modified by others in GenBank but also corrected an additional transcriptional

111 ced and compared with sequences available in GenBank by phylogenetic analysis.

112 hic Alu insertions in sequences submitted to GenBank by screening the elements against reference geno

113 that can be used for sequence submission to GenBank (by Sequin or tbl2asn), a GenBank flat file, or

114 l; Pseudopirsonia is cercozoan; two previous GenBank 'Caecitellus' sequences are Adriamonas.

115 n this study combined with 339 obtained from GenBank), collected from patients in 36 provinces in Vie

116 lenok Brachymystax tumensis and analyzed the GenBank complete mt genomes of related species.

117 <30% of the prokaryotic genomes submitted to GenBank contain partial repeat features of specific type

118 arly in the context of missing or incomplete GenBank data, and, whenever possible, should be evaluate

119 ted in this paper have been deposited in the GenBank database (accession nos.

120 ces of the circulating HIV-1 isolates in the GenBank database and observed that, in addition to the p

121 bimonthly releases and daily updates of the GenBank database are available by FTP.

122 bimonthly releases and daily updates of the GenBank database are available by FTP.

123 bi-monthly releases and daily updates of the GenBank database are available by FTP.

124 bimonthly releases and daily updates of the GenBank database are available by FTP.

125 bimonthly releases and daily updates of the GenBank database are available by FTP.

126 bimonthly releases and daily updates of the GenBank database are available by FTP.

127 bimonthly releases and daily updates of the GenBank database are available by FTP.

128 bimonthly releases and daily updates of the GenBank database are available by FTP.

129 bimonthly releases and daily updates of the GenBank database are available by FTP.

130 bimonthly releases and daily updates of the GenBank database are available by FTP.

131 More than 97% of HBV BCP sequences in the GenBank database can be correctly identified by the melt

132 ional Center for Biotechnology Information's GenBank database is problematic because of annotation er

133 a strain of M. catarrhalis available in the GenBank database was analyzed, and open reading frames p

134 6S rRNA gene, listed as G. ferruginea in the GenBank database.

135 quences of Aspergillus spp. deposited in the GenBank database.

136 their homology to annotated sequences in the GenBank database.

137 ted in this paper have been deposited in the GenBank database.

138 ose of other ascaridomorphs available in the GenBank database.

139 ison to bacterial sequences available in the GenBank database.

140 einhardtii expressed sequence tags (ESTs) in GenBank dbEST and community EST assemblies were either o

141 Few GenBank deposits were found to be complete for either re

142 ore, legacy bioinformatics file formats like GenBank do not provide enough information about the purp

143 e data from this article can be found in the GenBank/EMBL data libraries under accession numbers BE 6

144 e data from this article can be found in the GenBank/EMBL data libraries under accession numbers DU 6

145 from this study have been submitted to DDBJ/GenBank/EMBL under accession numbers EU940701-EU977132 (

146 Swiss-Prot, in turn, relies on GenBank/Embl/DDJP for predicted proteins from complete g

147 tabase Collaboration (INSDC), comprising the GenBank, ENA (EMBL) and DDBJ databases.

148 f which 108 exhibited high similarities with Genbank entries.

149 E products for antisense transcripts and the GenBank EST database revealed that TART antisense transc

150 European Molecular Biology Laboratory (EMBL)/GenBank feature table format for reading and displaying

151 In addition to the DDBJ/EMBL/GenBank feature table format, we share metadata formats

152 encing, and produce an annotated sequence in Genbank file format as output.

153 It combines gene annotations from GenBank files and other sources with information retriev

154 hical user interface, validation of uploaded GenBank files, and abilities to import phages from exist

155 pri-miR-199a2 within the human Dnm3os gene (GenBank FJ623959).

156 gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene cons

157 mission to GenBank (by Sequin or tbl2asn), a GenBank flat file, or the predicted protein sequences in

158 es, along with flanking sequences, to search GenBank for identical matching strings.

159 rms, most likely because 70% of the mRNAs in GenBank for these genes were cloned from tumor samples.

160 the MG1655 Genbank record, one of only a few Genbank genome records that are updated by a community e

161 gy Information, comprises a set of duplicate Genbank genome records that can be modified by the NCBI

162 erlapping 400 to 900-bp records found in the Genbank Genome Survey Sequence database.

163 A query of the GenBank genomic database predicts the existence of a sim

164 NREF, PIR, Gene Ontology, KEGG, Entrez Gene, GenBank, GenPept, IMAGE, RefSeq, UniGene, OMIM, PDB, Euk

165 y method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases,

166 divergent regions are identical between the GenBank H. taimen and two lenok subspecies, B. lenok and

167 A comparison of the data with the GenBank H. taimen mt genome (HQ897271) reveals significa

168 1.89 to 8.68, were further confirmed in 163 GenBank HBV-HCC sequences from nine Asia regions, assaye

169 GenBank homology searches using sequence corresponding t

170 proportions of sequences without significant Genbank homology, which has hampered identification of v

171 This was confirmed by analysis of the GenBank Human EST database, which revealed the presence

172 demonstrating that the gene encoding Q5LIW1 (GenBank ID YP_209877.1) was able to complement an API-de

173 novirus to be sequenced and was deposited in GenBank in 1999.

174 ly sequenced plastomes together with 12 from GenBank in an attempt to reconstruct deep relationships

175 GenBank is a comprehensive database that contains public

176 GenBank is a comprehensive database that contains public

177 GenBank is a comprehensive database that contains public

178 GenBank is accessible through NCBI's retrieval system, E

179 GenBank is accessible through the National Center for Bi

180 GenBank is accessible through the National Center for Bi

181 GenBank is accessible through the NCBI Entrez retrieval

182 GenBank is accessible through the NCBI Entrez retrieval

183 GenBank is accessible through the NCBI Entrez retrieval

184 GenBank is accessible through the NCBI Entrez retrieval

185 GenBank is accessible through the NCBI Entrez retrieval

186 GenBank is accessible through the NCBI Nucleotide databa

187 GenBank is accessible through the nuccore, nucest, and n

188 GenBank((R)) (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database that contains publ

189 GenBank((R)) (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database that contains publ

190 Sequences from GenBank, isolated from diseased plants between 1988 and

191 c reference for resources such as PubMed and GenBank, it has grown to its current size of >1300 title

192 ntative set of known structures and searches GenBank iteratively.

193 his particular four-amino acid region, GPPT (GenBank KC329849) versus DLQL (GenBank NC004293), respec

194 These data include all mRNAs from GenBank mapped to all organisms, RefSeq alignments, gene

195 heuristic utilizing knowledge obtained from GenBank metadata (i.e. a 'metadata heuristic').

196 sets such as the nucleotide database in NCBI GenBank, metagenomic datasets in Camera, and the marine

197 nce from annotations of UCSC Known Genes and GenBank mRNA.

198 vel promoters we looked into other evidences-GenBank mRNAs, spliced ESTs, CAGE promoter tags and mRNA

199 region, GPPT (GenBank KC329849) versus DLQL (GenBank NC004293), respectively at residues 389-392.

200 omenclature based on the longest transcript (GenBank: NM_001128227), which encodes a 31-amino acid lo

201 ion c.722dupA (p.Val242Glyfs( *)33) in PEX5 (GenBank: NM_001131023.1).

202 .Arg1173Leu), and c.3008G>A, (p.Gly1003Asp) (GenBank: NM_001273.3), affect evolutionarily highly cons

203 identified two homozygous variants in SPARC (GenBank: NM_003118.3; c.497G>A [p.Arg166His] in individu

204 r protein than the originally described one (GenBank: NM_005476), which has been used previously in m

205 osyl-oligosaccharide glucosidase) mutations (GenBank: NM_006302.2; c.[65C>A; 329G>A] p.[Ala22Glu; Arg

206 ividuals had a homozygous c.692dup mutation (GenBank: NM_022167.3) in the xylosyltransferase II locus

207 etectable homologs from other species in the GenBank NR nucleotide/protein database.

208 In addition to maintaining the GenBank nucleic acid sequence database, the National Cen

209 In addition to maintaining the GenBank nucleic acid sequence database, the National Cen

210 In addition to maintaining the GenBank nucleic acid sequence database, the National Cen

211 expressed sequences collected from the NCBI GenBank Nucleotide database for the construction of tran

212 Two GenBank 'opalinid' sequences are fungal; Pseudopirsonia

213 This motif has no homologs in GenBank or PROSITE and is unique to flightin and parafli

214 GenBank organizes the sequence data received from indivi

215 ving all genomic DNA sequences from the NCBI GenBank, over 1 x 10(11) base pairs of 3.3 x 10(6) seque

216 iales are probably divergent bicoeceans (the GenBank Placidia sequence is a basidiomycete/heterokont

217 f the participating databases, DDBJ, ENA and GenBank, principles of data exchange within the collabor

218 utative environmental peritrich sequences at Genbank, produced a comprehensive tree of peritrichs fro

219 selected taxonomic group have accumulated in GenBank, PUmPER automatically extends the alignment and

220 GenBank (R) is a comprehensive database that contains pu

221 GenBank (R) is a comprehensive database that contains pu

222 GenBank(R) is a comprehensive database that contains pub

223 GenBank(R) is a comprehensive database that contains pub

224 GenBank(R) is a comprehensive database that contains pub

225 In addition to maintaining the GenBank(R) nucleic acid sequence database, the National

226 In addition to maintaining the GenBank(R) nucleic acid sequence database, the National

227 In addition to maintaining the GenBank(R) nucleic acid sequence database, the National

228 grams, and accession numbers are assigned by GenBank(R) staff upon receipt.

229 GenBank((R)) (www.ncbi.nlm.nih.gov/genbank/) is a compre

230 GenBank((R)) (www.ncbi.nlm.nih.gov/genbank/) is a compre

231 GenBank((R)) is a comprehensive database that contains p

232 ry three-marker analysis including taxa from GenBank raises this number to 107 species from 48 genera

233 + links each pseudoknot in PseudoBase to the GenBank record of the corresponding nucleotide sequence

234 source of annotation updates for the MG1655 Genbank record, one of only a few Genbank genome records

235 ana barcode sequences (n = 247, including 24 GenBank records) formed a monophyletic lineage separate

236 a polymorphism along with the corresponding GenBank reference information.

237 he only published IL-10 sequence existing in Genbank reported from C4D guinea pigs, genomic DNA was i

238 shows that it maps to 22q13 rather than the GenBank reported locus of 22p13.

239 Searching the database of GenBank revealed that a large number of expressed sequen

240 1 CGs (30 CGs from our study and 48 CGs from GenBank) revealed two HPV11 lineages (lineages A and B)

241 T similarity (E-value <10-5) to sequences in GenBank's non-redundant databases, indicating that a lar

242 nclature variation and paralogues; moreover, GenBank's structure and tools are not conducive to searc

243 fection-related microbes were chosen through GenBank search and synthesized.

244 arity to published sequences in unrestricted GenBank searches, and there are no significant open read

245 .4 strains identified in this study and from GenBank segregated these viruses into at least 9 distinc

246 ational Center for Biotechnology Information Genbank sequence data archive.

247 ragments between the donor and the recipient GenBank sequence suggests that the introgression is loca

248 This sequence, along with other GenBank sequences from past EV-D68 occurrences, was used

249 A BlastP search of GenBank sequences revealed five glutamine amidotransfera

250 Malo, Tanna, and Epi and compared them with GenBank sequences to determine (i) the distribution of P

251 graphers that rely on geospatial metadata of GenBank sequences.

252 ded sequences and the sequences deposited in GenBank showed plausible misidentifications, and the use

253 ples, and other mammalian cells available in GenBank showed the predominance of a specific structure

254 GenBank staff assign accession numbers upon data receipt

255 ed BankIt or standalone Sequin programs, and GenBank staff assign accession numbers upon data receipt

256 ed BankIt or standalone Sequin programs, and GenBank staff assign accession numbers upon data receipt

257 e sequencing projects into 18 divisions, and GenBank staff assign unique accession.version identifier

258 ed BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receip

259 grams, and accession numbers are assigned by GenBank staff upon receipt.

260 grams, and accession numbers are assigned by GenBank staff upon receipt.

261 grams, and accession numbers are assigned by GenBank staff upon receipt.

262 ograms and accession numbers are assigned by GenBank staff upon receipt.

263 ograms and accession numbers are assigned by GenBank staff upon receipt.

264 Before GenBank submission, EST sequences are typically screened

265 The gene feature table can be used to create GenBank submission.

266 sequences were mined from EST databases and GenBank submissions from four insect orders: Coleoptera

267 We reviewed all GenBank submissions of HIV-1 reverse transcriptase seque

268 gnificant homology with proteins reported in GenBank, suggesting that the genus Emaravirus evolved fu

269 logenies built from 2.6 million sequences in GenBank suggests that signal is strong in vertebrates an

270 similarity to known protein sequences within GenBank, Syn5 shares features with T7-like phages.

271 The PNU can also be used to correct GenBank table files prior to submission to GenBank.

272 ms were twice as likely to be represented in GenBank than their normal tissue-associated splice forms

273 In Genbank the protein deduced from this gene is currently

274 n to displaying the original annotation from GenBank, the CMR makes available secondary automated str

275 Data are publicly available from GenBank, the HapMap web site, and the MITOMAP database.

276 ious name for nitronate monooxygenase in the GenBank(TM) and PDB databases, but the enzyme was not ki

277 similarity 4,985 genes are annotated in the GenBank(TM) as NMO.

278 n more than 490 hypothetical proteins in the GenBank(TM), the vast majority of which are currently mi

279 s and validated complete coding sequences in GenBank to (1) regroup the individual probes into consis

280 s full genomes of influenza A available from Genbank to provide an auto-updating documentation of the

281 e alignment tool that generates contigs from GenBank trace file data and BioExtract Server, a web-bas

282 equence Database(http://www.ncbi.nlm.nih.gov/genbank/TSA.html) under accession numbers JI163767-JI182

283 Annotation updates to Genbank U00096 are transmitted from EcoGene to NCBI.

284 data from this study have been submitted to GenBank under accession numbers: CK329321-CK334090; CF89

285 A sequence comparison search of GenBank using BLASTP revealed several full-length paralo

286 eptides from other Conus species recorded in GenBank, we date the major duplication events after the

287 with the non-redundant set of corn mRNAs in GenBank, we estimate that there are about 50,000 differe

288 risons with available DNA sequence data from GenBank, we estimate the number of species-level genetic

289 By mining DNA microarray data bases at GenBank, we identified up-regulation of membrane type 1

290 th 332 Chinese HRSVB sequences obtained from GenBank were analyzed to determine the geographic and ye

291 clusters for which the first blastn hits in GenBank were members of the known bee phylotypes.

292 ther with 766 HRSV sequences downloaded from GenBank, were analyzed to understand the recent circulat

293 e a novel gene, OSTL (annotated as RNF217 in Genbank), which shares the first exon and a CpG island w

294 reviously existing R. reniformis sequence in GenBank, while the RN_VAR2 sequence is more divergent.

295 82% of the ISs and transposases annotated in GenBank with 80% sequence identity.

296 rRNA gene clone sequences were deposited in GenBank with Accession No. JQ366086-JQ387568.

297 ctuca (SsHV2L) and deposited the sequence in GenBank with accession number KF898354.

298 n this work we utilized A-B PCR and screened GenBank with sequences from isolated clones to identify

299 om putative thylacine mitochondrial genes in GenBank, with one of our samples originating from a dire

300 ical sequence formats, including UniProtXML, Genbank XML, FASTA and FASTQ.