ライフサイエンスコーパス: Gossypium

1 oid (containing "A" and "D" genomes) cotton (Gossypium).

2 ancestrally retained prior to the origin of Gossypium.

3 ere specific to either the A or D genomes of Gossypium.

4 t comprehensive identification of lncRNAs in Gossypium.

5 nase (RLK) gene family in Oryza, Glycine and Gossypium.

6 the directionality of genome size change in Gossypium.

7 ch as the A- and D-genomes of allotetraploid Gossypium.

8 y be common in the allotetraploid nucleus of Gossypium.

9 terized set of 16 diploid species of cotton (Gossypium) and 4 species representing allopolyploid deri

10 e divergence in diploid members of the genus Gossypium, and this pattern is conserved in allotetraplo

11 mes) as well as its two diploid progenitors, Gossypium arboreum (A genome) and Gossypium raimondii (D

12 m, as well as the model diploid progenitors, Gossypium arboreum (A) and Gossypium raimondii (D).

13 Dt genome with the already sequenced diploid Gossypium arboreum (AA) and Gossypium raimondii (DD) gen

14 Here we sequenced and assembled the Gossypium arboreum (AA; 2n = 26) genome, a putative cont

15 (+)-Delta-cadinene synthase (DCS) from Gossypium arboreum (tree cotton) is a sesquiterpene cycl

16 inant (+)-delta-cadinene synthase (DCS) from Gossypium arboreum catalyzes the metal-dependent cycliza

17 erichia coli from CDN1-C1 cDNA isolated from Gossypium arboreum cyclizes (1RS)-[1-2H](E, E)-FDP to >9

18 ogy modeling using the template structure of Gossypium arboreum delta-cadinene synthase.

19 ers compared with growing the Asiatic cotton Gossypium arboreum L.

20 iber cDNAs of a cultivated diploid species ( Gossypium arboreum L.).

21 TCP gene family in a diploid cotton species, Gossypium arboreum, including phylogenetic analysis, chr

22 DD) Gossypium hirsutum ("Upland" cotton) and Gossypium barbadense ("Sea Island," "Pima," or "Egyptian

23 that is preferentially expressed in cotton (Gossypium barbadense L. cv Sea Island) fiber was isolate

24 In Pima cotton (Gossypium barbadense L.), a crop that is bred for irriga

25 In one recently formed polyploid, cotton (Gossypium barbadense L.; AD genome), 83 non-cross-hybrid

26 families in the genome of tetraploid cotton (Gossypium barbadense L; [39]) revealed a small subset of

27 cultivated species of allopolyploid cotton, Gossypium barbadense produces extra-long fibers for the

28 sts of adaxial guard cells from Pima cotton (Gossypium barbadense) and coleoptile tips from corn (Zea

29 Pima cotton (Gossypium barbadense) is widely cultivated because of it

30 .), squash (Cucurbita moschata), and cotton (Gossypium barbadense) macrofossils were excavated from a

31 P), to sesquiterpene phytoalexins in cotton (Gossypium barbadense) plants is catalyzed by delta-cadin

32 nes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only

33 oschata), peanuts (Arachis sp.), and cotton (Gossypium barbadense).

34 ommercial importance, Gossypium hirsutum and Gossypium barbadense, were domesticated after polyploidi

35 patterns of genetic divergence among diploid Gossypium (cotton) genomes, 780 cDNA, genomic DNA and si

36 In Gossypium (cotton), the 3-fold genome size variation amo

37 Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotid

38 The inferred Gossypium gene order corresponded more closely than the

39 hat represent a nonredundant set of putative Gossypium genes containing partial or full-length coding

40 ions and subgenomic distributions of cotton (Gossypium) genes/QTLs that confer resistance to the bact

41 ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago, conferred a

42 c maps for diploid (D) and tetraploid (AtDt) Gossypium genomes composed of sequence-tagged sites (STS

43 one, and only one, D-genome diploid cotton, Gossypium gossypioides, contains moderate levels of (oth

44 Like maize, Gossypium has undergone a threefold increase in genome s

45 uence repeat (SSR) loci were re-sequenced in Gossypium herbaceum (A1 genome), G. arboreum (A2), G. ra

46 elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longic

47 An expression library of dark-grown cotton (Gossypium hirsutm L.) cotyledons was screened with antib

48 s between cultivars of allotetraploid (AADD) Gossypium hirsutum ("Upland" cotton) and Gossypium barba

49 cotton seed proteomes from the allopolyploid Gossypium hirsutum (AD genome) and its model A-genome an

50 al structure of recombinant annexin Gh1 from Gossypium hirsutum (cotton fibre) has been determined an

51 rough examining the tips of young elongating Gossypium hirsutum (Gh) and G. barbadense (Gb) fibers.

52 ss-1 (Li1) is a monogenic dominant mutant of Gossypium hirsutum (upland cotton) with a phenotype of i

53 enomic coding sequences from upland cotton ( Gossypium hirsutum ) BRI1 ( GhBRI1 ) were obtained and c

54 characterize genome-wide diversity among 440 Gossypium hirsutum and 219 G. barbadense cultivars and l

55 motor kinesins, Kinesin-13A, from the cotton Gossypium hirsutum and Arabidopsis thaliana.

56 Gossypium hirsutum and G. barbadense, are the two cultiv

57 o independently domesticated cotton species, Gossypium hirsutum and G. barbadense.

58 rm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic co

59 loid species of great commercial importance, Gossypium hirsutum and Gossypium barbadense, were domest

60 Gossypium hirsutum contributes the most production of co

61 hesis, a family of transgenic cotton plants (Gossypium hirsutum cv. Coker 312 elite) was produced tha

62 nslocation breakpoints, and telosome arms in Gossypium hirsutum cytogenetic stocks by fluorescence in

63 virus-induced gene silencing, we identified Gossypium hirsutum GhWRKY59 as an important transcriptio

64 Gossypium hirsutum has proven difficult to sequence owin

65 Gossypium hirsutum is an allotetraploid cotton species p

66 While the widely cultivated cotton species Gossypium hirsutum is generally susceptible, the diploid

67 ses of 32 789 high-quality ESTs derived from Gossypium hirsutum L.

68 Here we sequenced the allotetraploid Gossypium hirsutum L. acc.

69 Cotton (Gossypium hirsutum L. cv Acala SJ-1) fibers were also an

70 re isolated from cotton cultivars Coker 312 (Gossypium hirsutum L.) and Sea Island (G. barbadense L.)

71 asing the leaf temperature of intact cotton (Gossypium hirsutum L.) and wheat (Triticum aestivum L.)

72 ured in vivo during the expansion of cotton (Gossypium hirsutum L.) cotyledons.

73 Cotton (Gossypium hirsutum L.) fibers are single-celled trichome

74 We have characterized cotton (Gossypium hirsutum L.) genes encoding type 1 metallothio

75 Two homologous cotton (Gossypium hirsutum L.) genes, GhCTL1 and GhCTL2, encode

76 iased distribution in the tetraploid cotton (Gossypium hirsutum L.) genome that was also linked to di

77 chitinase and 1,3-beta-glucanase in cotton (Gossypium hirsutum L.) leaves.

78 cDNA clone (997 bp in length) from a cotton (Gossypium hirsutum L.) library which putatively encodes

79 American cotton (Gossypium hirsutum L.), transformed with Bacillus thurin

80 radiation hybrid" (WWRH) panel from cotton (Gossypium hirsutum L.).

81 the elongating fiber cells of Upland cotton (Gossypium hirsutum L.).

82 CotMYBA, a myb gene which is expressed in Gossypium hirsutum ovules and has some homology to MIXTA

83 Here, we investigated the role of a cotton (Gossypium hirsutum) actin gene in the organization of ac

84 f homoeologous loci in allopolyploid cotton (Gossypium hirsutum) and in species representing its dipl

85 The fibers of cotton (Gossypium hirsutum) are single-cell trichomes that under

86 that specific AGPs were produced by cotton (Gossypium hirsutum) calli undergoing SE and that when th

87 ase in Nicotiana or subunit 1 of cottonseed (Gossypium hirsutum) catalase were introduced in the sens

88 We have characterized two cotton (Gossypium hirsutum) cDNA clones and identified one rice

89 Domestication of upland cotton (Gossypium hirsutum) converted it from a lanky photoperio

90 s from several plant sources (mature cotton (Gossypium hirsutum) embryos, roots of cotton seedlings,

91 encoding annexin was isolated from a cotton (Gossypium hirsutum) fiber cDNA library.

92 Cotton (Gossypium hirsutum) fibers are single-celled seed coat h

93 We used cotton (Gossypium hirsutum) fibers that underwent robust elongat

94 In cotton (Gossypium hirsutum) fibers, cortical microtubules underg

95 Developing cotton (Gossypium hirsutum) fibers, cultured in vitro with their

96 in, GhKCH1, has been identified from cotton (Gossypium hirsutum) fibers.

97 Upland cotton (Gossypium hirsutum) has long been an important economic

98 Cotton (Gossypium hirsutum) provides the world's dominant renewa

99 photosynthetic, cotyledon library of cotton (Gossypium hirsutum) seedlings with putative plastid-targ

100 NAEs in vitro and in vivo in imbibed cotton (Gossypium hirsutum) seeds.

101 ponses of field and greenhouse-grown cotton (Gossypium hirsutum) source leaves to water-deficit stres

102 A silencing vector for cotton (Gossypium hirsutum) was developed from the geminivirus C

103 including wheat (Triticum aestivum), cotton (Gossypium hirsutum), and soybean (Glycine max), have con

104 VL5) with its target gene GhCHR from cotton (Gossypium hirsutum).

105 s directly in seed tissues of upland cotton (Gossypium hirsutum).

106 mmon beans (Phaseolus vulgaris), and cotton (Gossypium hirsutum).

107 emic disease resistance in the dicot cotton (Gossypium hirsutum).

108 dely cultivated cotton is an allotetraploid (Gossypium hirsutum, AADD) that contains GhMYB2A and GhMY

109 nomes (A(T) and D(T)) of the allotetraploid, Gossypium hirsutum, as well as the model diploid progeni

110 synthases of other prokaryotes, Arabidopsis, Gossypium hirsutum, Populus alba x Populus tremula, corn

111 and DT) of the allopolyploid cotton species, Gossypium hirsutum.

112 ted for 10 of 40 genes examined in ovules of Gossypium hirsutum.

113 with genomic DNA from allotetraploid cotton Gossypium hirsutum.

114 ries were derived from allopolyploid cotton (Gossypium hirsutum; A(T) and D(T) genomes) as well as it

115 s], tobacco [Nicotiana tabacum], and cotton [Gossypium hirsutum]) from warm regions.

116 which the six most informative interspecific Gossypium hirsutumxG. barbadense genetic maps were used

117 in naturally occurring allopolyploid cotton (Gossypium L.), a synthetic allopolyploid of the same gen

118 me duplication (WGD) event(s) in the diploid Gossypium lineage and its (their) effects: a genome-leve

119 round of genome duplication occurred in the Gossypium lineage.

120 bred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the ou

121 and tetraploid members of the cotton genus (Gossypium, Malvaceae).

122 studies have suggested that diploid cotton (Gossypium) might be an ancient polyploid.

123 in only one of the five tetraploid species (Gossypium mustelinum).

124 of divergent paralogues and recombinants in Gossypium, Nicotiana, Tripsacum, Winteraceae, and Zea ri

125 ogenitors, Gossypium arboreum (A genome) and Gossypium raimondii (D genome).

126 loid progenitors, Gossypium arboreum (A) and Gossypium raimondii (D).

127 equenced diploid Gossypium arboreum (AA) and Gossypium raimondii (DD) genomes revealed conserved gene

128 Annotated whole genome sequences of Gossypium raimondii are available with aligned genetic m

129 duplications were shared by G. arboreum and Gossypium raimondii before speciation.

130 13 major scaffolds of the recently released Gossypium raimondii genome indicating high level of homo

131 YB genes were identified in cotton D genome (Gossypium raimondii), that are much larger than that fou

132 oidy, we studied a model diploid progenitor (Gossypium raimondii, D-genome) of the allopolyploid (AD-

133 gene densities in corresponding regions from Gossypium raimondii, V. vinifera, Arabidopsis thaliana a

134 e datasets collected from the cotton species Gossypium raimondii.

135 is of the TCP transcription factor family in Gossypium raimondii.

136 r and the outgroup D genome of non-spinnable Gossypium raimondii.

137 ypsy-like retrotransposon sequences, Gorge3 (Gossypium retrotransposable gypsy-like element), appears

138 nd those from related A and D genome diploid Gossypium species ( G. arboreum and G. thurberi ) indica

139 mic sequences from several tetraploid (AtDt) Gossypium species and genotypes with putative diploid A-

140 Allotetraploid Gossypium species are inferred to contain at least 14 lo

141 ences have differentially accumulated in the Gossypium species with the smallest genome, G. raimondii

142 Adh gene copy number varies among Gossypium species, with diploids containing at least sev

143 Drought is a key limiting factor for cotton (Gossypium spp.) production, as more than half of the glo

144 The reference genome sequence for cotton (Gossypium spp.) revealed a ploidy change of a complexity

145 ps of extant diploid and tetraploid cottons (Gossypium spp.) were used to infer the approximate order

146 ar mechanisms of fiber initiation in cotton (Gossypium spp.), an integrated approach combining transc

147 the world's natural fiber comes from cotton (Gossypium spp.), which is an important crop worldwide.

148 tion of lncRNAs has been reported in cotton (Gossypium spp.).

149 ponsible for allelic differences between the Gossypium tetraploids and their diploid progenitors.

150 e representative diploid (n = 13) members of Gossypium that vary in genome size from 880 to 2460 Mb (

151 ion-yr-old) and synthetic tetraploid cotton (Gossypium) to determine whether homoeologous gene pairs

152 Because ESTs from diploid and allotetraploid Gossypium were combined in a single assembly, we were in

153 et several hundred homeologous gene pairs of Gossypium were printed on custom NimbleGen microarrays.