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1 HERV (-H, -K, and -L family)-specific T cell responses w
2 HERV DNA sequences in the human genome represent the rem
3 HERV-E expression in ccRCC linearly correlated with HIF-
4 HERV-K (HML-2) RNA was found in plasma fractions of HIV-
5 HERV-K deoxyuridine triphosphate nucleotidohydrolase ind
6 HERV-K ENV imparts an endocytic entry pathway that requi
7 HERV-K envelope and deoxyuridine triphosphate nucleotido
8 HERV-K expression strongly correlated with TDP-43, a mul
9 HERV-K pol transcripts were increased in patients with A
10 HERV-K(HML-2)-specific CD8+ T cells obtained from HIV-1-
11 HERV-K113 has full-length open reading frames for all vi
12 HERV-K18 env transcripts were not significantly differen
13 HERV-K18 env transcripts, HHV-6 viral copy number, and H
14 HERVs are silenced in most normal tissues, up-regulated
15 ngth RNA of the env gene of the type 1 and 2 HERV-K (HML-2) viruses collected from the plasma of seve
16 nsistent with the proposed mode of action, a HERV-K(HML-2)-specific CD8+ T cell clone exhibited compr
20 13 years) were tested for responses against HERV peptides in gamma interferon (IFN-gamma) enzyme imm
23 This work also demonstrates that although HERV-K (HML-2) proviruses in the human genome are highly
26 in HERV-K proviruses in the human genome and HERV-K DNA generated during in vitro replication in the
27 xed in the modern human genome (HERV-K60 and HERV-KI) were subjected to hypermutation by a cytidine d
29 -reactivity between homologous HIV-1-Pol and HERV-K(HML-2)-Pol determinants, raising the possibility
30 possibility that homology between HIV-1 and HERVs plays a role in shaping, and perhaps enhancing, th
33 se findings suggest a possible role for anti-HERV immunity in the control of chronic HIV-1 infection
34 is article, we demonstrate that a human anti-HERV-K (HML-2) transmembrane protein Ab binds specifical
35 g assays detected significant titers of anti-HERV-K env IgG in a large proportion of BC patients.
39 ) coimmunoprecipitation of virion-associated HERV-K(CON) Gag with HIV-1 Gag, and (iii) rescue of a la
40 n marked contrast to other betaretroviruses, HERV-K ENV imparts broad species tropism in cultured cel
41 ral therapy (HAART) had stronger and broader HERV-specific T cell responses than HAART-suppressed pat
42 l cells (PAEC) to apoptosis was increased by HERV-K deoxyuridine triphosphate nucleotidohydrolase in
46 ric analyses of an HLA-B51-restricted CD8(+) HERV response in one HIV-1-infected individual revealed
50 eplication and that certain highly conserved HERV-derived proteins may serve as promising therapeutic
58 , there are conflicting reports on detecting HERV RNA in non-cellular clinical samples such as plasma
59 imary lymphocytes express up to 32 different HERV-K envelopes, and that at least two of the most expr
61 C45A3) and an endogenous retroviral element (HERV-K_22q11.23), a prostate-specific androgen-repressed
64 although members of one group of human ERVs (HERVs), HERV-K, were recently active with members that r
66 control of HIV-1 infection and for exploring HERV-K(HML-2)-targeted HIV-1 vaccines and immunotherapeu
67 nd that one of the most abundantly expressed HERV-K envelopes not only makes a full-length protein bu
70 re capable of lysing target cells expressing HERV-K env protein in BC patients but not in normal fema
75 lpha can serve as transcriptional factor for HERV-E by binding with HIF response element (HRE) locali
80 odern infectious HERV-K has yet to be found, HERV-K activation has been associated with cancers, auto
84 s that are fixed in the modern human genome (HERV-K60 and HERV-KI) were subjected to hypermutation by
86 Indeed, reverse transcription of genomic HERV-K RNA into the DNA form is able to occur in three d
88 xpression of the endogenous retrovirus group HERV-K (HML-2) is seen in many human cancers, although t
89 members of one group of human ERVs (HERVs), HERV-K, were recently active with members that remain ne
90 ge of human endogenous retroviruses (HERVs), HERV-K(HML2), is upregulated in many cancers, some autoi
91 The results for all four loci showed higher HERV-K expression in the basal subtype, suggesting simil
92 addition, precise mapping of the defects in HERV-K proviruses as was done here identifies the key po
94 the spectrum of mutations that are found in HERV-K proviruses in the human genome and HERV-K DNA gen
95 V-1 Tat protein caused a 13-fold increase in HERV-K (HML-2) gag RNA transcripts in Jurkat T cells and
96 e LTR was found to be hypomethylated only in HERV-E-expressing ccRCC while other tumors and normal ti
100 ghout the human genome, but as no infectious HERV-K virus has been detected to date, the mechanism by
104 ncytins, this protein, called suppressyn, is HERV-derived, placenta-specific and well-conserved over
105 rt that human endogenous retrovirus group K (HERV-K) (HML-2) proviruses are expressed at significantl
106 st that human endogenous retrovirus group K (HERV-K) provirus expression plays a role in the pathogen
107 that RNA from human endogenous retrovirus K (HERV-K) (HML-2), a relatively recent entrant into the hu
108 mplicated the human endogenous retrovirus K (HERV-K) dUTPase located within the PSORS1 locus in the m
111 encoded by a human endogenous retrovirus K (HERV-K) may be a candidate gene for the psoriasis suscep
112 V, as well as human endogenous retrovirus K (HERV-K)108--a betaretrovirus-like human endogenous retro
113 n of the human endogenous retrovirus type K (HERV-K) (HML-2), we used next-generation sequencing to d
117 ription of the HML-2 lineage of HERV type K [HERV-K(HML-2)] and the expression of Gag and Env protein
118 tested for human endogenous retrovirus-K18 (HERV-K18) env transcripts using a TaqMan quantitative po
120 that canonical retroviruses package, modern HERV-K viruses can contain reverse-transcribed DNA (RT-D
123 dy, we demonstrate that wild-type and mutant HERV-K dUTPase proteins induce the activation of NF-kapp
124 uman primary cells with wild-type and mutant HERV-K dUTPase proteins triggered the secretion of T(H)1
125 ls that seemingly lack K111, we discover new HERV-K (HML-2) members hidden in pericentromeres of seve
126 -1 infection activates expression of a novel HERV-K (HML-2) provirus, termed K111, present in multipl
128 us retroviruses (HERVs) by comparing de novo HERV integration targeting with the distribution of fixe
129 a distribution intermediate between de novo HERV-K(Con) integration sites and older fixed HERV-Ks.
130 sruptive to host mRNA synthesis, but de novo HERV-K(Con) integration within transcription units showe
131 nome, and we have detected the activation of HERV-K (HML-2) proviruses in the blood of patients with
133 These properties reflect the activity of HERV-K and suggest the existence of additional unique lo
134 We performed a cross-sectional analysis of HERV-specific T cell responses in 42 vertically HIV-1-in
135 Construction of a near-complete catalog of HERV-T fossils in primate genomes allowed us to estimate
138 diabetes have significantly fewer copies of HERV-K(C4) and that this effect is not solely due to lin
139 We conclude that the slower dynamics of HERV-H suggest a host role for the internal regions of t
143 al repeat, suggesting that the expression of HERV-K (HML-2) RNA in these patients may involve sense a
145 data indicated that increased expression of HERV-K is associated with decreased mutation of H-Ras (w
147 In this study, we determined the extent of HERV-K env expression in human breast cancer (BC) and wh
149 nscript encoding the entire envelope gene of HERV-E as expressed selectively in ccRCC tumors, as dist
150 y, one of them, the envelope glycoprotein of HERV-K18, is incorporated into HIV-1 in an HIV matrix-sp
151 that a previously undetected, large group of HERV-K (HML-2) proviruses, which are descendants of the
152 ce more recently, such as the HML-2 group of HERV-K elements, still retain intact open reading frames
155 ted in transcription of the HML-2 lineage of HERV type K [HERV-K(HML-2)] and the expression of Gag an
158 We have identified a specific pattern of HERV-K expression in ALS, which may potentially define t
160 electron microscopy, we show the presence of HERV-K (HML-2) virus-like particles in the plasma of lym
161 -1 Gag, as demonstrated by (i) processing of HERV-K(CON) Gag by HIV-1 protease in virions, (ii) coimm
164 ed entry pathway and that the restriction of HERV-K to primate genomes reflects downstream stages of
168 covery and case-control association study of HERV-K dUTPase variants in 708 psoriasis cases and 349 h
170 ribed loci in the HML-2 and 3 subfamilies of HERV-K, with a specific pattern of expression including
171 n particular, RNA from the HML-2 subgroup of HERV-K proviruses has been reported to be highly express
173 tem to investigate to what extent virions of HERV-Kcon, murine leukemia virus, and HIV-1 have the abi
174 These findings indicate that accumulation of HERVs in the human germline is a two-step process: integ
175 expression of HERV-K (HML-2), the family of HERVs that most recently entered the genome, is tightly
176 ssays demonstrated that the effect of Tat on HERV-K (HML-2) expression occurred at the level of the t
178 er, a new class of insertionally polymorphic HERV-K family members, present in a minority of individu
179 is of a total of 36 nonreference polymorphic HERV-K proviruses, including 19 newly reported loci, wit
180 We propose that insertionally polymorphic HERVs could be novel genetic risk factors and hence prov
182 es of Alu, L1 and SVA elements (and possibly HERV-K elements) remain actively mobile in the human gen
184 tained both immature and correctly processed HERV-K (HML-2) proteins and virus-like particles that we
185 tides predicted to be products of the CT-RCC HERV-E envelope transcript-stimulated CD8(+) T cells, wh
188 igher antibody responses against recombinant HERV-K dUTPase in psoriasis patients compared with contr
189 Taken together, we generated high-resolution HERV-K expression profiles specific for activated human
192 oblast-specific human endogenous retroviral (HERV) envelope proteins, called syncytins, and their wid
193 previously that human endogenous retroviral (HERV) mRNA transcripts and protein are found in cells of
197 e that elements of the endogenous retrovirus HERV-K (HML-2) can be found in the blood of modern-day h
198 at upregulation of the endogenous retrovirus HERV-K could both initiate and sustain activation of the
200 ement (LINE) or human endogenous retrovirus (HERV) repeats as a cause of deletions, duplications, and
201 be derived from human endogenous retrovirus (HERV) type E and were expressed in RCC cell lines and fr
202 transduction of human endogenous retrovirus (HERV)-Kcon, a consensus of the HERV-K(HML-2) family, wer
204 Expression of a human endogenous retrovirus (HERV-K) was determined in autopsy brain tissue of patien
206 RNA of a type K human endogenous retrovirus, HERV-K (HML-2), at high titers in the plasma of HIV-1-in
209 Though most human endogenous retroviruses (HERVs) are thought to be irrelevant to our biology notab
211 cumulation of human endogenous retroviruses (HERVs) by comparing de novo HERV integration targeting w
213 fate of most human endogenous retroviruses (HERVs) has been to undergo recombinational deletion.
218 ne lineage of human endogenous retroviruses (HERVs), HERV-K(HML2), is upregulated in many cancers, so
220 s composed of human endogenous retroviruses (HERVs), which are thought to be inactive remnants of anc
224 While the youngest of these retroviruses, HERV-K(HML-2), termed HK2, is able to code for all viral
230 fection, but our knowledge on which specific HERV-Ks are expressed in primary lymphocytes currently i
232 s opposed to the other subtypes) and suggest HERV-K as a possible target for cancer vaccines or immun
236 in cells of HIV-1-infected patients and that HERV-K (HML-2)-specific T cells can eliminate HIV-1-infe
237 ring HIV-1 infection, it is conceivable that HERV-K could affect HIV-1 replication, either by competi
242 part a narrow species tropism, we found that HERV-K ENV mediates broad tropism encompassing cells fro
249 t ERV groups is observed but we suggest that HERV-K activity may have increased in humans since they
253 he more recently acquired HERVs, such as the HERV-K (HML-2) group, maintain coding open reading frame
254 elope protein that prevents infection by the HERV-T virus and likely contributed to the extinction of
255 Our data support an independent role for the HERV-K dUTPase on psoriasis susceptibility, and suggest
256 In conclusion, this report identifies the HERV-K HML-2 loci whose expression profiles differ upon
257 es of protein and drug binding motifs in the HERV RNA ensemble that do not occur in minimum free ener
259 gy notable exceptions include members of the HERV-H family that are necessary for the correct functio
260 ipitation assays, mutational analysis of the HERV-K (HML-2) long terminal repeat, and treatments with
261 imary lymphocytes, and the expression of the HERV-K (HML-2) rec and np9 oncogenes was also markedly i
262 osylation sites, suggesting that some of the HERV-K (HML-2) viral RNAs have undergone reverse transcr
265 to evaluate differences in expression of the HERV-K family in breast cancers of the various subtypes.
266 s retrovirus (HERV)-Kcon, a consensus of the HERV-K(HML-2) family, were analyzed and found to reside
267 idence supporting the recent activity of the HERV-K(HML2) group, which has been implicated in human d
268 f HLA alleles associated with psoriasis, the HERV-K SNPs rs9264082 and rs3134774 remained significant
272 he youngest human ERVs (HERVs) belong to the HERV-K(HML-2) subgroup and were endogenized within the p
275 e also show experimentally that two of these HERV-K env sequences (K18 and K102) retain their ability
276 nt T cell populations corresponding to these HERV and HIV-1 epitopes, ruling out cross-reactivity.
281 2, and K18) constitute over 90% of the total HERV-K expression in primary human lymphocytes of five d
282 e investigated the abilities of Gag from two HERV-K proviruses to support production of virus-like pa
284 We also present striking evidence that two HERV-K(HML-2) proviruses that are fixed in the modern hu
286 nificantly activates expression of 26 unique HERV-K (HML-2) proviruses, silences 12, and does not sig
287 verall, our results offer evidence of unique HERV-E envelope peptides presented on the surface of ccR
288 identifying six novel, previously unreported HERV-K(HML2) elements (HERV-K is human endogenous retrov
290 lls expressing Gag proteins of both viruses, HERV-K(CON) Gag colocalized with HIV-1 Gag at the plasma
291 We investigated 826 fixed and 1,065 in vitro HERV-Ks in human, and 1,624 fixed and 242 polymorphic ET
295 reading frames for all viral proteins, while HERV-K101 has a full-length gag open reading frame and i
296 dence that HIV-1 Gag heteromultimerizes with HERV-K Gag at the plasma membrane, presumably through NC
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