ライフサイエンスコーパス: Halobacterium

1 ns include the major cell surface protein in Halobacterium, a glycoprotein with a partially character

2 The ease of culturing Halobacterium and the availability of methods for its ge

3 physical/functional interaction network for Halobacterium, and an interface to detailed stochastic/k

4 lable transcriptomics data in Archaeoglobus, Halobacterium, and Thermococcus spp.

5 For example, Sulfolobus and Halobacterium are extremely divergent.

6 Fractionation experiments in Pyrococcus and Halobacterium cells revealed that, in vivo, the dimeric

7 ococcus morrhuae, Natronobacterium gregoryi, Halobacterium cutirubrum, Halobacteriurn trapanicum, Met

8 We have analyzed the phenotype of Halobacterium deletion mutants lacking mre11 and/or rad5

9 rotein SpoVJ, Mg2+, and Co2+ chelatases, the Halobacterium GvpN gas vesicle synthesis protein, dynein

10 the dimeric POR from a mesophilic archaeon, Halobacterium halobium (21% identity).

11 from the polar lipids of extreme halophiles, Halobacterium halobium and Halobacterium salinarum, reta

12 bacteriorhodopsin crystals generated in live Halobacterium halobium bacteria and confirmed by electro

13 obe for membrane protein unfolding, we chose Halobacterium halobium bacteriorhodopsin (bR) as a model

14 Spontaneous Evn-resistant mutants of Halobacterium halobium contained mutations in hairpins 8

15 A mutant of an archaeon Halobacterium halobium has been isolated that exhibits r

16 The bop gene of wild-type Halobacterium halobium NRC-1 is transcriptionally induce

17 Exposure of purple membrane from Halobacterium halobium to sublytic concentrations of Tri

18 Escherichia coli or the halophilic archaeum Halobacterium halobium were constructed.

19 Mutants of an archaeon Halobacterium halobium, resistant to the universal inhib

20 -purple transition in the purple membrane of Halobacterium halobium.

21 bacteria and against the halophilic archaeon Halobacterium halobium.

22 remely halophilic archaeum (archaebacterium) Halobacterium halobium.

23 HMG-CoA reductase of the halobacterium Haloferax volcanii was initially partially

24 Although the genomes of closely related Halobacterium, Haloquadratum, and Haloarcula (>90% avera

25 protein family, Archaerhodopsin-3 (Arch) of halobacterium Halorubrum sodomense, was recently shown t

26 e predicted exosome in the Methanococcus and Halobacterium lineages.

27 eening transformants of an orange (Pum- bop) Halobacterium mutant for purple (Pum+ bop+) colonies on

28 In Halobacterium NRC-1 and in Helicobacter pylori, our meth

29 The extremely halophilic archaeon Halobacterium NRC-1 can switch from aerobic energy produ

30 Deletion of the arsADRC gene cluster in a Halobacterium NRC-1 Deltaura3 strain resulted in increas

31 The Halobacterium NRC-1 genome codes for 2,630 predicted pro

32 replication system of the model haloarchaeon Halobacterium NRC-1 is encoded within a circular chromos

33 istance in the extremely halophilic archaeon Halobacterium NRC-1 withstanding up to 110 J/m2 with no

34 he exception of Thermoplasma acidophilum and Halobacterium NRC-1) and some bacteria, including the hy

35 ave reconstructed physiological behaviors of Halobacterium NRC-1, an archaeal halophile, in sublethal

36 on from the bop promoter in the haloarchaeon Halobacterium NRC-1, is highly induced under oxygen-limi

37 ibe the metabolic and regulatory networks of Halobacterium NRC-1.

38 ther there is redundancy of this function in Halobacterium or the gene was misannotated.

39 ere tested with an F1- ATPase, isolated from Halobacterium saccharovorum, by evaluating the rate of A

40 hat share similarity (36 to 56 percent) with Halobacterium salinarium Bat, Azotobacter vinelandii NIF

41 odopsin photocycle in the purple membrane of Halobacterium salinarium have been detected by time-reso

42 The purple membrane of Halobacterium salinarium is a two-dimensional lattice of

43 rent organisms (Saccharomyces cerevisiae and Halobacterium salinarium NRC-1).

44 The Halobacterium salinarium purple membrane is a two-dimens

45 c residues within the N-terminal half of the Halobacterium salinarium signal transducer HtrI [the hal

46 amily of transducer proteins in the Archaeon Halobacterium salinarium using a site-specific multiple

47 amily of transducer proteins in the Archaeon Halobacterium salinarium was identified.

48 dopsin (bR), the light-driven proton pump in Halobacterium salinarium, involves this kind of a change

49 mutant forms of bacteriorhodopsin (sbR) from Halobacterium salinarium, produced by Escherichia coli o

50 n functions as a light-driven proton pump in Halobacterium salinarium.

51 nd pumps protons across the cell membrane of Halobacterium salinarium.

52 proton pump found in the purple membrane of Halobacterium salinarium.

53 driven proton pump in the purple membrane of Halobacterium salinarium.

54 rom the extremely halophilic archaebacterium Halobacterium salinarium.

55 as described earlier for halorhodopsin from Halobacterium salinarium.

56 -terminal regions of HemAT from the archaeon Halobacterium salinarum (HemAT-Hs) and from the Gram-pos

57 The spectral tuning of halorhodopsin from Halobacterium salinarum (shR) during anion transport was

58 Sensory rhodopsin I (SRI) in Halobacterium salinarum acts as a receptor for single-qu

59 Halophilic archaea, such as Halobacterium salinarum and Natronobacterium pharaonis,

60 helix, visual pigment-like proteins found in Halobacterium salinarum and related halophilic Archaea.

61 Using bacteriorhodopsin from Halobacterium salinarum and the translocon SecYEG from E

62 otein A, a beta-barrel, eubacterial MP, (ii) Halobacterium salinarum bacteriorhodopsin, an alpha-heli

63 pic protein bacterioopsin, the apoprotein of Halobacterium salinarum bacteriorhodopsin.

64 d a homologous gene replacement strategy for Halobacterium salinarum based on ura3, which encodes the

65 Halobacterium salinarum displays four distinct kinetic f

66 d oxidative stress responses of the archaeon Halobacterium salinarum exposed to ionizing radiation (I

67 ss conditions in the model archaeal organism Halobacterium salinarum For yeast, our method correctly

68 stribution of Z-DNA-forming sequences in the Halobacterium salinarum GRB chromosome was analyzed by d

69 yptic peptides from bovine serum albumin and Halobacterium salinarum in a high throughput liquid chro

70 Dodecin from the archaeal Halobacterium salinarum is a riboflavin storage device.

71 Signal transduction in the archaeon Halobacterium salinarum is mediated by three distinct su

72 I and the mutant D73E, both reconstituted in Halobacterium salinarum lipids, using FTIR difference sp

73 s a dimer when functionally expressed in the Halobacterium salinarum membrane.

74 y rhodopsin II (SRII) by flash photolysis of Halobacterium salinarum membranes genetically engineered

75 Sensory rhodopsin II (SRII) in Halobacterium salinarum membranes is a phototaxis recept

76 s carry out light-driven proton transport in Halobacterium salinarum membranes.

77 have constructed a model for this process in Halobacterium salinarum NRC-1 through the data-driven di

78 al lineages: a photoheterotrophic halophile (Halobacterium salinarum NRC-1), a hydrogenotrophic metha

79 rotein and in the extended C-terminus of the Halobacterium salinarum protein.

80 roton pump bacteriorhodopsin in the archaeon Halobacterium salinarum requires coordinate synthesis of

81 A fusion protein in which the C-terminus of Halobacterium salinarum sensory rhodopsin I (SRI) is con

82 Halobacterium salinarum sensory rhodopsin II (HsSRII) is

83 low for the archaea using the model organism Halobacterium salinarum sp. NRC-1 and demonstrate its ap

84 dation, we discovered an RNase (VNG2099C) in Halobacterium salinarum that is transcriptionally co-reg

85 eless HtrI, a phototaxis transducer found in Halobacterium salinarum that transmits signals from the

86 Chimeras of the Halobacterium salinarum transducers HtrI and HtrII were

87 As a test case, bacteriorhodopsin (bR) from Halobacterium salinarum was crystallized from a bicellar

88 Halobacterium salinarum was used as the model organism a

89 dried purple membrane patches purified from Halobacterium salinarum with infrared vibrational scatte

90 Using this method, we demonstrated that Halobacterium salinarum, a hypersaline-adapted archaeal

91 conditions of limited iron, the extremophile Halobacterium salinarum, a salt-loving archaeon, mounts

92 e Bacteria (termed HemAT-Hs for the archaeon Halobacterium salinarum, and HemAT-Bs for Bacillus subti

93 iorhodopsin, the light-driven proton pump of Halobacterium salinarum, consists of the membrane apopro

94 the first sensory rhodopsins in the archaeon Halobacterium salinarum, genome projects have revealed a

95 I), a repellent phototaxis receptor found in Halobacterium salinarum, has several homologous residues

96 ers in the phototaxis system of the archaeon Halobacterium salinarum, HtrI and HtrII, are methyl-acce

97 treme halophiles, Halobacterium halobium and Halobacterium salinarum, retain entrapped carboxyfluores

98 epellent phototaxis receptor in the archaeon Halobacterium salinarum, similar to visual pigments in i

99 In the model archaeon Halobacterium salinarum, the transcription factor TrmB r

100 cts of iron homeostasis in the model species Halobacterium salinarum.

101 the cell membrane of the halophilic organism Halobacterium salinarum.

102 e inserted into the membrane of the archaeon Halobacterium salinarum.

103 gh its bound transducer HtrI in the archaeon Halobacterium salinarum.

104 ervation with the rhodopsins of the archaeon Halobacterium salinarum.

105 nsitive phototaxis responses in the archaeon Halobacterium salinarum.

106 the TrmB metabolic GRN in the model archaeon Halobacterium salinarum.

107 ystems analysis of the Cu stress response of Halobacterium salinarum.

108 found in the purple membrane of the archaeon Halobacterium salinarum.

109 duced proton pump in the halophilic archaeon Halobacterium salinarum.

110 entifying how this differs from the archaeon Halobacterium salinarum.

111 acterium Anabaena flos-aquae and the archaea Halobacterium salinarum.

112 h functions as a light-driven proton pump in Halobacterium salinarum.

113 e purple membrane of the salt marsh archaeon Halobacterium salinarum.

114 alorhodopsin, Jaws, derived from Haloarcula (Halobacterium) salinarum (strain Shark) and engineered t

115 oteins, as well as complex H. influenzae and Halobacterium samples, the model is shown to produce pro

116 lts from genetic and nutritional analyses of Halobacterium showed that mutants with lesions in open r

117 r in the genetically tractable Haloarchaeon, Halobacterium sp.

118 Our results show that the Halobacterium sp. has evolved a carefully orchestrated s

119 Comparison of the genome architectures of Halobacterium sp. NRC-1 and H. marismortui suggests a co

120 We purified GCR from Halobacterium sp. NRC-1 and identified the sequence of 2

121 The genome of the halophilic archaeon Halobacterium sp. NRC-1 and predicted proteome have been

122 used for systematic whole-genome analysis of Halobacterium sp. NRC-1 and several other prokaryotes to

123 moautotrophicum and leucyl tRNA derived from Halobacterium sp. NRC-1 as an orthogonal tRNA-synthetase

124 The extremely halophilic archaeon Halobacterium sp. NRC-1 can grow phototrophically by mea

125 Analysis of the complete Halobacterium sp. NRC-1 genome sequence showed that the

126 a brp paralog identified by analysis of the Halobacterium sp. NRC-1 genome, reduced bacteriorhodopsi

127 protein predicted to be encoded by a gene in Halobacterium sp. NRC-1 that is annotated as mercuric re

128 ty of ThrRS from Sulfolobus solfataricus and Halobacterium sp. NRC-1 was inhibited by borrelidin, whe

129 e complete sequence of an extreme halophile, Halobacterium sp. NRC-1, harboring a dynamic 2,571,010-b

130 l binding sites of the Cse4p protein; and in Halobacterium sp. NRC-1, we discoverd subtle differences

131 early five times as many as those encoded in Halobacterium sp. NRC-1--suggesting H. marismortui is si

132 ritional requirements for survival than does Halobacterium sp. NRC-1.

133 Halobacterium sp. NRC-1was used to express the N-termina

134 iZ gene in the extremely halophilic archaeon Halobacterium sp. strain NRC-1 blocked the ability of th

135 c respiration of the archaeal model organism Halobacterium sp. strain NRC-1 by using phenotypic and g

136 A strain of Halobacterium sp. strain NRC-1 carrying a null allele of

137 The genome of Halobacterium sp. strain NRC-1 contains a large gene clu

138 These results indicate that Halobacterium sp. strain NRC-1 contains an arsenite and

139 The genome sequence of Halobacterium sp. strain NRC-1 encodes genes homologous

140 The genome of the halophilic archaeon Halobacterium sp. strain NRC-1 encodes homologs of the e

141 Computer analysis of the Halobacterium sp. strain NRC-1 ORF Vng1581C gene and the

142 The data also show that Halobacterium sp. strain NRC-1 possesses a high-affinity

143 mutants of the extremely halophilic archaeon Halobacterium sp. strain NRC-1 showed that open reading

144 A cbiP mutant strain of the archaeon Halobacterium sp. strain NRC-1 was auxotrophic for adeno

145 s was performed on cell lysates of wild-type Halobacterium sp. strain NRC-1, gas vesicle-deficient mu

146 e analysis of one such replicon, pNRC100, in Halobacterium sp. strain NRC-1, showed that it undergoes

147 tgenomic investigation of the model archaeon Halobacterium sp. strain NRC-1, we used whole-genome DNA

148 enzyme in the extremely halophilic archaeon Halobacterium sp. strain NRC-1.

149 ization in the extremely halophilic archaeon Halobacterium sp. strain NRC-1.

150 le of replication in the halophilic archaeon Halobacterium sp. strain S9.

151 that two major energy production pathways in Halobacterium sp., phototrophy and arginine fermentation

152 acks the three core exosome subunits, and in Halobacterium sp., the superoperon is divided into two p

153 mRNA and protein analyses of four strains of Halobacterium sp.: the wild-type, NRC-1; and three genet

154 In the CysRS of the extreme halophile Halobacterium species NRC-1, deletion of the peptide red

155 mosome of an archaeon, the extreme halophile Halobacterium strain NRC-1.

156 Halobacterium synthesized cobalamin in a chemically defi

157 ed method for gene knockouts/replacements in Halobacterium that relies on both selection and counters

158 plementary to that seen in Methanococcus and Halobacterium, Thermoplasma acidophilum lacks the RNase

159 A cbiB mutant strain of Halobacterium was auxotrophic for adenosylcobinamide-GDP

160 or the repair of DNA double-strand breaks in Halobacterium, whereas Rad50 is dispensable.