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1 IRES activity was dependent on upstream MAPK (mitogen-ac
3 nesis of the miR-134 binding site in Sabin-1 IRES relieved miR-134-mediated repression indicating tha
4 PK activity is a major determinant of type 1 IRES competency, host cell cytotoxicity, and viral proli
6 SRPK activity to enhance picornavirus type 1 IRES translation and favor PVSRIPO tumor cell toxicity a
7 diverges structurally from canonical Type 1 IRESs (e.g. poliovirus) but nevertheless also contains a
10 o corresponding elements in canonical Type 1 IRESs, and non-canonical flanking domains (d8, d9 and d1
11 reconstitution of initiation on three Type 1 IRESs: poliovirus (PV), enterovirus 71 (EV71), and bovin
14 ons are labeled by expression of the or111-7:IRES:GAL4 transgene whose axons terminate in the central
15 K1 mediates adaptive responses by activating IRES-dependent translation, and the impairments in trans
16 ovirus 2A protease generates a high-affinity IRES binding truncation of eIF4G that stimulates eIF4A d
19 indings are consistent with NCL acting as an IRES trans-acting factor (ITAF) for ORF2 translation and
20 s nuclear ribonucleoprotein, hnRNP A1, is an IRES transacting factor (ITAF) that regulates the IRES-d
26 nctional link between tRNA modification- and IRES-dependent translation during tumor cell invasion an
27 inaccessibility of the pyrimidine tract and IRES activity, as determined in both in vitro and in viv
28 screen identified hnRNP A1 (A1) and RPS25 as IRES-binding trans-acting factors required for ER stress
29 1, which can program increased initiation at IRES motifs on mRNA by the translational initiation comp
31 the deletion of IIId2 from the CSFV and BDV IRES elements impairs initiation of translation by inhib
34 omains, facilitating head swivel and biasing IRES translocation via hitherto-elusive intermediates wi
35 nd 3) the retarding effect of ribosome-bound IRES on protein synthesis is largely overcome following
39 e canonical Type 1 and divergent cadicivirus IRESs require the same IRES trans-acting factor, poly(C)
42 cular mechanism by which La stimulates CCND1 IRES-mediated translation, and we propose that its RNA c
44 suggesting that this viral IRES and cellular IRES may have similar strategies for internal translatio
46 ellow fluorescent protein expression in ChAT-IRES-Cre mice, we tested the hypothesis that there is a
50 reERLacZ (Prom1C-L) mice, in which a CreERT2-IRES-nuclear LacZ cassette is knocked into the first ATG
51 sults distinguished two pathways of 80S:CrPV IRES complex assembly that produce elongation-competent
52 itiation factor nor initiator tRNA, the CrPV IRES jumpstarts translation in the elongation phase from
56 Once the 60S is recruited, the binary CrPV-IRES/80S complex oscillates between canonical and rotate
57 oscopy, we have solved the structure of CrPV-IRES bound to the ribosome of the yeast Kluyveromyces la
58 is Virus Internal Ribosomal Entry Site (CrPV-IRES) binds the small ribosomal subunit (40S) and the tr
59 sis virus internal ribosome entry site (CrPV-IRES) is a folded structure in a viral mRNA that allows
60 ompanying factor-binding data show that CrPV-IRES binding mimics a pretranslocation rather than initi
61 both states, the pseudoknot PKI of the CrPV-IRES mimics a tRNA/mRNA interaction in the decoding cent
63 interact with pseudoknot I (PKI) of the CrPV-IRES stabilizing it in a conformation reminiscent of a h
64 rgenic IRES of Cricket Paralysis Virus (CrPV-IRES) forms a tight complex with 80S ribosomes capable o
65 e demonstrate that C11 also blocks cyclin D1 IRES-dependent initiation and demonstrates synergistic a
68 ubset of mutations that are known to disrupt IRES activity failed to produce virus, demonstrating the
72 ell as Apc(+/Min) and Apc(CKO/CKO)/Lgr5-EGFP-IRES-CreERT2 mice, were analyzed by immunohistochemistry
73 ble knockout (Cbl/Cbl-b DKO) using Lgr5-EGFP-IRES-CreERT2, to demonstrate a mammary epithelial cell-a
74 r 5-positive (Lgr5(+)) stem cells (Lgr5-eGFP-IRES-CreERT2/Rosa26-TdTomato mice) and in situ hybridiza
75 he other hand, the CDV IRES forms a 40S/eIF3/IRES ternary complex, with multiple points of contact.
77 s work provides key details into how an EV71 IRES structure adapts to hijack a cellular protein, and
81 us (SVV), a picornavirus, is dispensable for IRES activity, while the IIId2 sub-domains of two pestiv
86 tagenesis, we demonstrate that the HIV-1 gag IRES does not use pre-folded RNA structure to drive func
87 a bicistronic reporter construct, HIV-1 gag IRES' activity is cell type-specific, with higher activi
88 devoid of extensive secondary structure has IRES activity and produces low levels of viral coat prot
89 Here we demonstrate that eIF4E regulates HAV IRES-mediated translation by two distinct mechanisms.
92 demonstrated that after binding, the 40S:HCV IRES complex is conformationally dynamic, undergoing slo
93 ovide an overview of approaches to block HCV IRES function by nucleic acid, peptide, and small molecu
95 Our data support a single-step model of HCV IRES recruitment to 40S subunits, irreversible on the in
96 pecifically contributes to activation of HCV IRES-driven translation by miR-122, but not to other act
99 ce of the rRNA interaction and show that HCV IRES activity requires a 3-nt Watson-Crick base-pairing
100 rokaryotes, the rRNA-binding site in the HCV IRES functions as an essential component of a more compl
102 rt translation mediated by the wild-type HCV IRES, but did not block translation mediated by the cap
105 ion in the 3' NTR and domain IIId of the HCV-IRES in the 5' NTR, and promoted HCV replication and tra
106 containing a human rhinovirus type 2 (HRV2) IRES, is demonstrating early promise in clinical trials
110 ution revealed that as with canonical Type I IRESs, 48S complex formation requires eukaryotic initiat
111 However, in contrast to canonical Type I IRESs, subsequent recruitment of 43S ribosomal complexes
112 oach reveals that the PKI domain of the IAPV IRES adopts an RNA structure that resembles a complete t
113 rovirus Israeli acute paralysis virus (IAPV) IRES PKI domain can uncouple 0 and +1 frame translation,
114 ned the role of previously characterized IGR IRES mutations on viral yield and translation in CrPV-in
116 g the key IRES-ribosome interactions for IGR IRES translation in infected cells, which highlights the
117 s have provided mechanistic details into IGR IRES translation, these studies have been limited to in
122 ation of IRES-J007, which displayed improved IRES-dependent initiation blockade and synergistic anti-
123 rkedly reduces an equol-mediated increase in IRES-dependent mRNA translation and the expression of sp
125 ne-tract within a stable hairpin inactivates IRES activity, since the stronger the stability of the h
131 to virus production, thus revealing the key IRES-ribosome interactions for IGR IRES translation in i
132 om HeLa cells to examine their effects on L1 IRES-mediated translation and L1 retrotransposition.
136 ole for the specific interaction of HCV-like IRESs with eIF3 in preventing ribosomal association of e
137 demonstrate that adjacent mutations modulate IRES activity, independently of protein-coding sequence
139 findings may be applicable to cellular mRNA IRES that also have little or no sequences/structures in
140 , we show that ribosomes assembled on mutant IRESs that direct exclusive 0 or +1 frame translation la
141 ikingly, PCBP2 enhanced initiation on mutant IRESs that retained consensus GNRA tetraloops, whereas m
144 locking the interaction of a requisite c-MYC IRES trans-acting factor, heterogeneous nuclear ribonucl
145 a small molecule capable of inhibiting c-MYC IRES translation as a consequence of blocking the intera
148 ain how c-myc was maintained, we studied myc IRES (internal ribosome entry site) function, which does
149 ound that prevented binding of A1 to the myc IRES and specifically inhibited myc IRES activity in MM
150 es the question of what effect the necessary IRES dissociation from the tRNA binding sites, and ultim
151 del with mice that overexpress the ErbB2/Neu-IRES-Cre transgene (NIC) specifically in the mammary epi
154 igated and resulted in the identification of IRES-J007, which displayed improved IRES-dependent initi
155 re knockin mice with a targeted insertion of IRES-Cre at the Ins2 locus and demonstrated with a cell
156 o studies revealed slowed growth kinetics of IRES-controlled VSVs in most of the cell lines tested.
160 x and Hsp90 to upregulate the translation of IRES-containing transcripts such as HIF1a, Myc and VEGF,
162 ounts for 15 gene-targeted strains of the OR-IRES-marker design coexpressing a fluorescent protein.
166 TN-mut) was inserted in frame into the pEF1a-IRES-DsRed-Express2 vector and transfected into bovine f
167 usion, the studies have shown that the pEF1a-IRES-DsRed-Express2-bMSTN-mut recombinant plasmid could
169 sought to determine whether the picornavirus IRES could be engineered into VSV to attenuate its neuro
170 Therefore, our data reveal how picornavirus IRESs use eIF4E-dependent and -independent mechanisms to
172 S) trans-acting factor (ITAF) for poliovirus IRES-mediated translation; however, it is not known whet
174 ell lines, we were able to identify putative IRES activity (nucleotides 442-637) in the coding region
175 This provides a mechanism to explain why PV IRES-mediated translation is stimulated by eIF4E availab
177 Initiation on Type 1 IRESs also requires IRES trans-acting factors (ITAFs), and several candidate
179 F2 with a GTP analog stabilizes the ribosome-IRES complex in a rotated state with an extra ~3 degrees
180 anINs) in p48Cre; TetO-KrasG12D; Rosa26(rtTa-IRES-EGFP) (iKras*) mice and LSL-KrasG12D mice bred with
181 divergent cadicivirus IRESs require the same IRES trans-acting factor, poly(C)-binding protein 2 (PCB
185 ergenic region internal ribosome entry site (IRES) adopts a triple-pseudoknotted RNA structure and oc
186 discovered an internal ribosome entry site (IRES) at the 5' untranslated region of the p53 mRNA.
187 s virus (EMCV) internal ribosome entry site (IRES) at the same sites as linear molecules with the IRE
189 he function of Internal Ribosome Entry Site (IRES) elements is intimately linked to their RNA structu
190 NAs containing internal ribosome entry site (IRES) elements such as those encoding for the tumor supp
194 iation routes, internal ribosome entry site (IRES) initiation and ribosome shunting, rely on ribosoma
196 ugh structured internal ribosome entry site (IRES) RNAs can manipulate ribosomes to initiate translat
197 e tests on the internal ribosome entry site (IRES) segments yield satisfiable results with experiment
199 s use a type I Internal Ribosome Entry Site (IRES) structure to facilitate protein synthesis and prom
200 ilitated by an internal ribosome entry site (IRES) that can autonomously bind a 40S ribosomal subunit
202 s an important internal ribosome entry site (IRES) trans-acting factor (ITAF) for poliovirus IRES-med
203 We define an internal ribosome entry site (IRES) within ELANE and demonstrate that adjacent mutatio
204 om usage of an internal ribosome entry site (IRES) within exon 5 that is glucocorticoid inducible.
206 C virus (HCV) internal ribosome entry site (IRES), we measured the rates of 40S subunit arrival to t
207 vation of this internal ribosome entry site (IRES)-dependent mRNA translation initiation pathway resu
210 Picornavirus internal ribosomal entry site (IRES)-mediated translation and cytopathogenic effects ar
216 disease virus internal ribosome entry site (IRES); this junction contains highly conserved motifs fo
217 iral genomes, internal ribosome entry sites (IRES) can be used to bypass the traditional requirement
223 Viruses use internal ribosome entry sites (IRESs) to minimize or, like the CrPV IRES, eliminate the
231 in slice preparation of transgenic adult Sst-IRES-Cre mice expressing tdTomato fluorescence, channelr
232 e shown that the human La protein stimulates IRES-mediated translation of the cooperative oncogene CC
237 poses: relieving the competition between the IRES and eIF3 for a common binding site on the 40S subun
238 These studies show that PCBP2 enables the IRES to exploit the GNRA tetraloop to enhance initiation
239 During this unusual translocation event, the IRES undergoes a pronounced conformational change to a m
244 ing a previously unseen binding state of the IRES and directly rationalizing that an eEF2-dependent t
246 ed a truncated reading frame upstream of the IRES by exon skipping, which led to synthesis of a funct
248 that an eEF2-dependent translocation of the IRES is required to allow the first A-site occupation.
251 d eukaryotes depends on the structure of the IRES RNA, but in bacteria this RNA uses a different mech
253 34 to Sabin-1 IRES caused degradation of the IRES transcript in a miR-134 and sequence specific manne
258 quence conservation of the 5' UTR render the IRES RNA a potential target for the development of selec
261 ubgenomic RNAs, strongly suggesting that the IRES was active in the gRNA invivo Since the TCV CP also
269 osensor internal ribosome entry site (thermo-IRES) elements, whose normalized cap-independent transla
271 umerous layers of Hox gene regulation, these IRES elements are essential for converting Hox transcrip
277 ween bacterial and eukaryotic ribosomes this IRES binds directly to both and occupies the space norma
278 KH3 is critical for PCBP2's binding to this IRES whereas KH1 is essential for PCBP2's function in pr
279 light a process of noncanonical translation, IRES-mediated translation, that is a growing source for
281 he ribosome-bound Taura syndrome virus (TSV) IRES belonging to the family of Dicistroviridae intergen
282 ficiency is lower than that of the wild-type IRES element, which on the other hand is fully resistant
289 Rather, MNK catalytic activity enabled viral IRES-mediated translation/host cell cytotoxicity through
292 ionally conserved switches involved in viral IRES-driven translation and may be captured by identical
293 tion of Raf-MEK-ERK1/2 signals induced viral IRES-mediated translation in a manner dependent on MNK1/
294 The tRNA shape-mimicry enables the viral IRES to gain access to the ribosome tRNA-binding sites a
295 nce conservation, suggesting that this viral IRES and cellular IRES may have similar strategies for i
301 We further demonstrate that co-therapy with IRES-J007 and PP242 significantly reduces tumor growth o
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