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1 LTR relapsers demonstrated reduced CD8(+)Ki67(+) cells e
2 LTR retrotransposons are mobile elements that are able,
3 LTR retrotransposons are repetitive DNA elements compris
4 LTRs may be infected in PCP outbreaks simultaneously wit
5 LTRs mismatched for CMV (donor(+)/recipient(-); D(+)R(-)
6 LTRs mismatched for CMV (donor+/recipient-; D+R-) are at
9 s to activate gene expression from the HIV-1 LTR and found that KSHV ORF45 is the most potent activat
10 dulate the activation of an integrated HIV-1 LTR and revealed that the most potent individual activat
13 nduced depletion of HDAC1 and 3 on the HIV-1 LTR that was associated with hyperacetylation of histone
15 d that the host protein Naf1 inhibited HIV-1 LTR-driven transcription of HIV genes and contributed to
16 at histone H3K27 and H3R26 orchestrate HIV-1 LTR-mediated transcription, and potentially opens a new
21 ure total HIV DNA, integrated HIV DNA, and 2-LTR circles in CD4(+) T cells from HIV-infected subjects
23 Total HIV DNA, integrated HIV DNA, and 2-LTR circles were detected in, respectively, 100%, 94%, a
24 of additional control conditions, such as 2-LTR quantification and the addition of reverse transcrip
25 levels of episomal HIV DNA (as measured by 2-LTR circles) and decreases the levels of HIV transcripti
27 ci that include approximately full-length (2-LTR) and solo-LTR alleles in addition to the unoccupied
28 An increase in 2-long-terminal-repeat (2-LTR) circles in the depleted FACT complex cell line indi
29 V-1 DNA, including 2-long terminal repeat (2-LTR) circles, and multiply spliced (ms-) and unspliced (
32 0.04), detectable 2-long terminal repeat (2-LTR), and lower nadir CD4(+) (P < 0.01) were independent
34 dividual loci identified three new unfixed 2-LTR proviruses within our set, including an intact provi
35 etermined by 2 independent reviewers) in 250 LTRs in a single university transplantation program.
36 ere with antisense transcription from the 3' LTR and vice versa, even with strong transcription emana
38 ere with antisense transcription from the 3' LTR, allowing viral genes encoded on opposite DNA strand
40 tire HIV-1 genome spanning between 5' and 3' LTRs of integrated HIV-1 proviral DNA copies from latent
43 g the DNA sequence of nucleosome A of the 3'-LTR of the mouse mammary tumor virus (147 bp MMTV-A).
44 7 LTR at time point of CLAD diagnosis and 37 LTR without any complication at routinely performed BAL.
48 , hbz, while sense transcription from the 5' LTR controls expression of all other viral genes, includ
49 e found that sense transcription from the 5' LTR does not interfere with antisense transcription from
53 8 BALF levels were significantly higher in 8 LTRs who additionally developed HCMV disease, as compare
56 ed in cis to stabilize assembly of the ERV-9 LTR enhancer complex and facilitate long-range LTR enhan
58 cribed from many of the 4000 copies of ERV-9 LTR retrotransposons acted by a similar cis mechanism to
59 rying approximately 4000 copies of the ERV-9 LTRs and in transgenic mouse erythroblasts carrying a si
60 In contrast, substitution of both FeLV-945 LTR and SU into FeLV-A/61E resulted in multicentric lymp
61 ence microscopy with LysoTracker Red DND-99 (LTR) indicated that E. ictaluri-containing vacuoles (ECV
63 terval, we identify that the insertion of an LTR-retrotransposon in its 11(th) intron results in a co
64 polyadenylation revealed that LTR/Gypsy and LTR/Copia were two major transposable elements within th
66 Evidence demonstrates that FeLV-945 SU and LTR are required together to fully recapitulate the dist
69 by ten-eleven translocation (TET) enzymes at LTR regions of ERVs, because vitamin C acts as a cofacto
70 sm by which DNA methylation is maintained at LTR retrotransposons and imprinted genes during developm
76 spergillus colonization is frequent among CF-LTRs and a positive intraoperative Aspergillus culture p
82 stic fibrosis-lung transplant recipients (CF-LTRs) may be at greater risk of IA following lung transp
83 psis (Arabidopsis thaliana), the constructed LTR library showed excellent sensitivity and specificity
85 of two or more parental genes, demonstrating LTR-retroposition as a novel mechanism of exon shuffling
86 T-bet > Eomesodermin (Eomes) differentiated LTR controllers from viremic relapsers and reciprocally
87 and CD4(+)T-bet(+) induction differentiated LTR controllers from early viremic relapsers, correlatin
89 is even higher, because we show that dormant LTR promoter activity can rescue loss of an essential up
90 3K9me3 levels and derepression of endogenous LTR- and LINE-repetitive DNA elements during differentia
92 cent studies cataloging the diversity of ERV LTRs acting as important transcriptional regulatory elem
97 e molecular features that likely account for LTR exaptation in developmental and tissue-specific gene
98 le progression into mitosis are required for LTR-mediated viral expression, suggesting that the evolu
101 whereas the presence of LINE in P2 or gypsy LTR retrotransposon in P3 reduced expression of the repo
108 NFkappaB/SP1-dependent activation of the HIV LTR and with the subsequent alterations of NPC neurogene
109 induced transcriptional activity of the HIV LTR promotor, an effect that required both NFkappaB and
110 y contribute to the sensitization of the HIV LTR to subsequent exposure to VOR, and to increase viral
111 HIV and with basal transcription of the HIV LTR, potently inhibiting replication of R5 HIV but not C
114 lyze the DNA methylation pattern of 4799 IAP LTR retrotransposons in embryonic stem, somatic and Neur
115 About half of the variably methylated IAP LTRs tend to be hypomethylated in ES cells, and nearly a
117 ading-empowered Perl program that identifies LTR-RTs and generates high-quality LTR libraries from ge
118 e successfully used programs for identifying LTRs and non-LTR retrotransposons in eukaryotic genome s
120 r follow-up time, the risk of skin cancer in LTR is comparable to that of kidney transplant recipient
123 CMV promoter, suggesting a role of SSRP1 in LTR-driven gene expression but not in viral DNA integrat
124 -10) in BAL fluid are associated with ACR in LTRs, suggesting a potential mechanistic role in the pat
127 cells in BAL was significantly increased in LTRs exhibiting viral control compared to those with CMV
129 fers a unique target to specifically inhibit LTR-retrotransposons, and tRF-targeting is a potentially
130 e maintenance of HIV-1 latency by inhibiting LTR-driven HIV-1 gene transcription in a nuclear factor
132 ogeny population of chromosomally integrated LTR retrotransposons consisting of pairwise recombinatio
137 s suggest random activation of a few or many LTR retrotransposons families in particular lineages ove
139 ssing human FLAG-PAD2 downstream of the MMTV-LTR promoter develop spontaneous neoplastic skin lesions
140 acted by a similar cis mechanism to modulate LTR enhancer function in activating transcription of dow
141 ing gene evolution-D6Ertd527e-in which an MT LTR provided a promoter and the 5' exon with a functiona
142 y used programs for identifying LTRs and non-LTR retrotransposons in eukaryotic genome sequences.
143 rspersed element 1 (L1) is an autonomous non-LTR retroelement that is active in mammalian genomes.
146 gates the hypothesis that RNH domains in non-LTR retrotransposons have a single origin and provides e
149 n-long terminal repeat (LTR) and MGEScan-non-LTR are successfully used programs for identifying LTRs
150 ough members of the L1 (LINE-1) clade of non-LTR retrotransposons can be deleterious, the L1 clade ha
153 , LTR_retriever also identifies noncanonical LTR-RTs (non-TGCA), which have been largely ignored in g
157 ronchoalveolar lavage (BAL) fluids (BALF) of LTR at CLAD diagnosis, are elevated and potential progno
159 developed for the de novo identification of LTR-RTs; however, these programs are associated with low
165 ectivity depended on specific recognition of LTR loop residues; the mechanism of action was ascribed
168 cterized mainly by a reversible silencing of LTR promoter-driven transcription of an integrated provi
169 report an extraordinary impact of a group of LTRs from the mammalian endogenous retrovirus-related ER
172 nal repeats (LTRs) of individual orthologous LTR-retrotransposons, the rates of synonymous and non-sy
174 se a new computational method called ProtDec-LTR for protein remote homology detection, which is able
175 y used benchmark dataset showed that ProtDec-LTR can achieve an ROC1 score of 0.8442 and an ROC50 sco
179 R enhancer complex and facilitate long-range LTR enhancer function in activating transcription of dow
180 vised manner via using the Learning to Rank (LTR) algorithm derived from natural language processing.
181 e limitation for lung transplant recipients (LTR) after the first year, and therapies targeting immun
182 T cell memory in lung transplant recipients (LTRs) is critical for host defense and allograft durabil
183 lavage (BAL) of lung transplant recipients (LTRs) to determine the association between CXCL10 (IP-10
189 nce the size of localized transport regions (LTRs) in both in vitro and in vivo models while decreasi
195 total HIV-1 DNA and 2-long terminal repeat (LTR) circles by quantitative polymerase chain reaction (
196 ollection of known ERV/long terminal repeat (LTR) elements to annotate the retroviral complement of t
198 activity of the viral long terminal repeat (LTR) from Vpr-deficient proviruses was significantly red
200 ript that contains the long terminal repeat (LTR) of lambda-olt 2-1 and shows a similar expression pa
202 ed Tip110 at the HIV-1 long terminal repeat (LTR) promoter and found that Tip110 expression was assoc
206 th specific classes of long terminal repeat (LTR) retrotransposons and organize into large loci (>50
210 es (ERVs), also called long terminal repeat (LTR) retrotransposons, begins with transcription by RNA
211 y resembles endogenous long terminal repeat (LTR) sequences, pointing to a select role of BRD4S-BRG1
212 ted in the foamy virus long terminal repeat (LTR) that has high-affinity binding to the CCCTC-binding
214 on in H3K27 at the HIV long terminal repeat (LTR), subsequent exposure to the HDACi suberoylanilide h
215 of HIV's promoter, the long terminal repeat (LTR), to generate bimodal ON-OFF expression and that tra
216 n A1 (HMGA1) and viral long terminal repeat (LTR), which led to higher levels of HIV-1 genomic integr
218 found two instances of long terminal repeat (LTR)-driven provirus transcription but no evidence to su
219 ction by enhancing HIV long terminal repeat (LTR)-driven transcription via the NF-kappaB pathway.
228 ansposons often carry long terminal repeats (LTRs) for retrovirus-like reverse transcription and inte
229 ransposons containing long terminal repeats (LTRs) form a substantial fraction of eukaryotic genomes.
230 stitution between two long terminal repeats (LTRs) of individual orthologous LTR-retrotransposons, th
231 ancer elements in the long terminal repeats (LTRs) of murine leukemia virus (MLV)-based vectors and t
232 e prediction of 20.5% long terminal repeats (LTRs) that doubled the previous estimate, and revealed a
234 nts (ERVs) containing long terminal repeats (LTRs), are silenced through trimethylation of histone H3
236 ents (TEs), including Long-Terminal-Repeats (LTRs) and SINE-VNTR-Alus (SVAs), that significantly affe
238 ng the long terminal repeat-retrotransposon (LTR-RT) type of TE, we estimated their death rates by co
240 pG-rich promoter not related to a retroviral LTR, with sites of expression including the placenta as
242 in differentiating the capacity of high-risk LTRs to establish durable immune control during early ch
243 nd differentiating the capacity of high-risk LTRs to establish immune control during early chronic in
245 6 carefully annotated, full-length Sirevirus LTR retrotransposons in maize, we show that their silenc
247 recombination resulting in a solitary (solo) LTR, although members of one group of human ERVs (HERVs)
250 th proviral form, and the more numerous solo-LTR form, thought to result from homologous recombinatio
252 age and that an age dependent model of solo-LTR formation describes the history of ERVs more accurat
253 ship between full-length proviruses and solo-LTRs to help identify large scale co-options in distant
257 The functional potential of the studied LTRs is even higher, because we show that dormant LTR pr
259 FACT proteins also interfere with HTLV-1 Tax-LTR-mediated transcription and viral latency, indicating
262 of binding peaks for a TF, and we found that LTR elements dominated these relationships in human.
264 ess, accumulating evidence has revealed that LTR sequences derived from distantly related ERVs have b
265 is of intronic polyadenylation revealed that LTR/Gypsy and LTR/Copia were two major transposable elem
268 ricted to tumorigenic cells, suggesting that LTR promoter activity is dependent upon the transcriptio
269 This demonstrates for the first time that LTRs generated with 20kHz+1MHz are also more permeable t
272 the fusion points between the mRNAs and the LTR retrotransposons, we identified shared short similar
274 erythroblasts, lncRNAs transcribed from the LTR retrotransposons of ERV-9 human endogenous retroviru
278 raction translated into stabilization of the LTR G-quadruplexes and increased promoter silencing acti
282 ively active RSK2 is unable to stimulate the LTR, suggesting that ORF45 may preferentially direct thi
283 hoeae-derived supernatants revealed that the LTR-inducing fraction contained a compound having a mass
285 ical LTRs are Copia elements, with which the LTR is four times shorter than that of other Copia eleme
286 kness and were primarily associated with the LTR/Gypsy retrotransposons in the heterochromatin flanki
289 ssion levels decline during development, the LTRs are marked by histone H3 lysine 4 trimethylation.
290 Within the cis-regulatory portion of the LTRs, a complex palindrome-rich region acts as a hotspot
291 During the posttransplant follow-up, these LTRs displayed HCMV DNA detection in the BALF by PCR, wh
294 ed viruses that express genes from the viral LTR but not from an internal immediate-early CMV promote
296 on in SMYD5 cancer cells was associated with LTR and endogenous retrovirus elements and decreased H4K
298 analyses show that this retrotransposon with LTRs (Long Terminal Repeats) is widely distributed among
299 we show that insertion of the fission yeast LTR retrotransposon Tf1 is guided by the DNA binding pro
300 ucity of young elements; the rarity of young LTR-RTs is a consequence of fewer births rather than acc
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