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1 nce relationships as a single finite ergodic Markov chain.
2 nsecutive state sequence was a heterogeneous Markov chain.
3 riate normal across loci using a Monte Carlo Markov chain.
4 uted IP3Rs, each represented by a four-state Markov chain.
5 ithout good bounds on the mixing time of the Markov chain.
6 s the programming and run performance of the Markov chain.
7 constants of an arbitrary, discrete, finite Markov chain.
8 te of convergence of many of the widely used Markov chains.
9 on the theory of continuous-time homogeneous Markov Chains.
10 hannel flux were examined using finite-state Markov chains.
11 (gj) records, we transformed an S36SM into a Markov chain 36-state model (MC36SM) of GJ channel gatin
12 ion indicates that the subsampling bootstrap Markov chain algorithm substantially reduces computation
14 n occur in accordance with a continuous time Markov Chain along the branches of a phylogenetic tree a
15 xponential of the underlying continuous-time Markov chain also show promise, especially in view of re
17 states from long random trajectories on the Markov chain and compare these with the rank of the pres
19 simulation, construction of continuous-time Markov chains and various export formats which allow mod
20 based approach is built on a continuous time Markov chain, and it is capable of evaluating the state
23 A theoretical analysis based on microscopic Markov-chain approach is presented to explain the numeri
25 long the lines of optimal prediction for the Markov chains associated with the dynamics on these netw
26 sent an interesting paper that discusses non-Markov-chain-based approaches to fitting Bayesian models
27 ever, readers should be aware that other non-Markov-chain-based methods are currently in active devel
28 wever, Bayesian models do not always require Markov-chain-based methods for parameter estimation.
29 perience confirms that students WANT to know Markov chains because they hear about them from bioinfor
31 The method avoids the use of a Monte Carlo Markov chain by employing priors for which the likelihoo
33 twork models, interpreted as continuous-time Markov chains, can be distinguished from each other unde
34 ce was computed for the distance between two Markov chains, constructed from the transition matrices
36 ential equations (ODE) and a continuous-time Markov chain (CTMC) model, are developed for spread of h
37 of control theory via the design of optimal Markov chain decision processes, mainly in the framework
38 nd use them to show that the continuous-time Markov chain describing allele frequency change with exc
39 other measures of complexity associated with Markov chain dynamical systems models of progression.
40 els were built using a series of interlinked Markov chains, each representing age increments of the N
41 usted transition probability matrix for this Markov chain enables the calculation of eigenvector valu
42 el the background sequences with Fixed Order Markov Chain (FOMC) yielding promising results for the c
43 are discrete binding events are modeled by a Markov chain for the encounter of small targets by few B
44 We show that the use of parallel Monte Carlo Markov chains for the exploration of the species space e
45 WKB theory and directly treat the underlying Markov chain (formulated as a birth-death process) obeye
47 WQuadv1C BeadChip array and imputed with the Markov Chain Haplotyping algorithm using the HapMap 3 re
53 osed-form solutions, we employ a Monte Carlo Markov Chain (MCMC) approach to perform classification.
55 thods (classical and inverse), a Monte Carlo Markov Chain (MCMC) estimation was used to generate sing
59 del accounting for UH in all vital rates and Markov chain methods to calculate demographic outcomes.
62 rocess, the TKF91 model is a continuous-time Markov chain model composed of insertion, deletion, and
64 We illustrate the approach using a simple Markov chain model to capture sequential dependencies be
65 from 1985 to 2011 for 598 216 adults, into a Markov chain model to estimate remaining lifetime diabet
66 ired fish of varying boldness, and we used a Markov Chain model to infer the individual rules underly
69 We base our method on an arbitrary-order Markov chain model with community structure, and develop
70 astic compartmental model (a continuous time Markov chain model) with both horizontal and vertical tr
71 eviation with respect to the continuous time Markov chain model, and we show that the new approach is
75 fects modeling, medoid-based clustering, and Markov chain modeling were used to analyze community tem
79 f puffs and sparks, we formulate and analyze Markov chain models of Ca(2+) release sites composed of
82 change to species dynamics via multispecies Markov chain models reveals strong links between in situ
83 (MSCE) models are a class of continuous-time Markov chain models that capture the multi-hit initiatio
84 ers was estimated using the "slice sampling" Markov Chain Monte Carlo (MCMC) algorithm implemented in
94 decreased computational cost relative to the Markov chain Monte Carlo (MCMC) algorithms that have gen
95 e transitions, commonly used in phylogenetic Markov chain Monte Carlo (MCMC) algorithms, perform poor
96 ds for summarizing the results of a Bayesian Markov chain Monte Carlo (MCMC) analysis of population s
99 thogen during an outbreak, we use a Bayesian Markov Chain Monte Carlo (MCMC) approach to estimate tim
101 of self-seeding of primary tumors, we use a Markov chain Monte Carlo (MCMC) approach, based on large
103 abolism and proposes to use the results of a Markov chain Monte Carlo (MCMC) based flux balance analy
105 Statistical modeling applying a Bayesian Markov chain Monte Carlo (MCMC) framework to the environ
106 as possible, we compared, within a Bayesian Markov Chain Monte Carlo (MCMC) framework, estimates of
109 nrichment measurement methods by combining a Markov chain Monte Carlo (MCMC) matrix factorization alg
110 ctures of shales are reconstructed using the markov chain monte carlo (MCMC) method based on scanning
111 correlation in exon splicing patterns, and a Markov chain Monte Carlo (MCMC) method coupled with a si
112 describe a coalescent-based full-likelihood Markov chain Monte Carlo (MCMC) method for jointly estim
113 resent a new C implementation of an advanced Markov chain Monte Carlo (MCMC) method for the sampling
116 with many markers can only be evaluated with Markov chain Monte Carlo (MCMC) methods that are slow to
117 etworks and provide the first application of Markov chain Monte Carlo (MCMC) methods to experimental
118 ting process, which was implemented by using Markov chain Monte Carlo (MCMC) methods, significantly r
123 ally, MACAU uses a computationally expensive Markov Chain Monte Carlo (MCMC) procedure, which cannot
125 sensitivity and specificity compared with a Markov Chain Monte Carlo (MCMC) sampling inference algor
126 archies using a combination of heuristic and Markov chain Monte Carlo (MCMC) sampling procedures and
127 from sequence data using Bayes' theorem and Markov chain Monte Carlo (MCMC) sampling, which is widel
128 r widespread application is the power of the Markov chain Monte Carlo (MCMC) techniques generally use
130 elop a Bayesian full-likelihood method using Markov Chain Monte Carlo (MCMC) to estimate background r
132 ariables and sampled via Metropolis-Hastings Markov chain Monte Carlo (MCMC), enabling systematic sta
133 riables from the posterior distribution with Markov Chain Monte Carlo (MCMC), using the recently prop
134 n via iterated filtering (MIF), and particle Markov chain Monte Carlo (pMCMC)--and three ensemble fil
135 , and a parallel computing algorithm for the Markov chain Monte Carlo -based posterior inference and
136 erated through the publicly available method Markov chain Monte Carlo 5C (MCMC5C) illustrated the out
139 d the corresponding P-values are computed by Markov chain Monte Carlo algorithm for Gaussian mixed li
155 r involve computationally intensive Bayesian Markov chain Monte Carlo algorithms that do not scale we
156 ecause of the computational demands of using Markov Chain Monte Carlo algorithms to estimate paramete
157 BP algorithm compares in quality with exact Markov Chain Monte Carlo algorithms, yet BP is far super
164 intractable and approximate methods such as Markov chain Monte Carlo and Variational Bayes (VB) are
165 We model the inferred deformation using a Markov chain Monte Carlo approach to solve for change in
169 sian model/variable selection approach using Markov Chain Monte Carlo computations was applied to the
170 on (LS) and Approximate Bayesian Computation Markov chain Monte Carlo estimation (ABC-MCMC), to infer
173 d a Bayesian version of our likelihood-based Markov chain Monte Carlo genealogy sampler LAMARC and co
175 stochastic clock network ensemble fitted by Markov Chain Monte Carlo implemented on general-purpose
176 d phylogenies reconstructed through Bayesian Markov chain Monte Carlo inference indicated that these
177 tation involves imputation steps within each Markov chain Monte Carlo iteration and Monte Carlo integ
179 nt and recessive models was performed by the Markov chain Monte Carlo linkage analysis method, MCLINK
181 stimate parameters of the mixture model, and Markov chain Monte Carlo method is employed to perform B
182 less, we successfully implemented a two-step Markov chain Monte Carlo method that we called "BICME",
183 ercome these limitations, we developed a new Markov chain Monte Carlo method to estimate parameters o
185 were analyzed using Bayesian reasoning and a Markov chain Monte Carlo method with a set of simultaneo
189 neous segregation and linkage analyses using Markov Chain Monte Carlo methods and detected linkage on
192 derlying assumption for many of the proposed Markov Chain Monte Carlo methods is that the data repres
193 inferred using slow sampling methods such as Markov Chain Monte Carlo methods or faster gradient base
194 yesian framework using data augmentation and Markov chain Monte Carlo methods to estimate variation i
198 ally solvable, several approaches, including Markov chain Monte Carlo methods, have been developed to
200 ing particle filtering methods with Bayesian Markov chain Monte Carlo methods, we are able to fit a w
209 ble desktop application that uses a Bayesian Markov chain Monte Carlo procedure to estimate the poste
210 time series of flour beetles, we found that Markov chain Monte Carlo procedures for fitting mechanis
212 gins and automated the process of setting up Markov Chain Monte Carlo runs for RNA alignments in Stat
214 ach samples inheritance vectors (IVs) from a Markov Chain Monte Carlo sampler by conditioning on geno
215 hood can be explored using a straightforward Markov chain Monte Carlo sampler, but one further post-p
216 ferred relative expression is represented by Markov chain Monte Carlo samples from the posterior prob
220 tional regression-based model emulation with Markov Chain Monte Carlo sampling to calibrate three sel
221 These Bayesian methods (with the aid of Markov chain Monte Carlo sampling) provide a generalizab
225 nce on the cross-experiment covariance using Markov chain Monte Carlo simulation to obtain an expecta
226 e fit the model using Bayesian inference and Markov chain Monte Carlo simulation to successive snapsh
227 random-effects models using vague priors and Markov chain Monte Carlo simulation with Gibbs sampling,
231 to apply the Bayesian approach executed with Markov chain Monte Carlo simulations using two data sets
233 exity (PLEX) is a flexible and fast Bayesian Markov chain Monte Carlo software program for large-scal
236 nting for these features directly and employ Markov chain Monte Carlo techniques to provide robust in
238 ted models called Bayesian networks, and use Markov chain Monte Carlo to draw samples from posterior
239 is a Bayesian posterior sampler that employs Markov chain Monte Carlo to explore the joint space of a
240 g bayesian hierarchical models estimated via Markov chain Monte Carlo using United Nations population
243 to Robust Estimates of ALelle frequency, via Markov chain Monte Carlo, and Complexity Of Infection us
244 ayesian partitioning model and computes, via Markov chain Monte Carlo, the posterior probability that
252 hylogenetic reconstruction, using a Bayesian Markov-chain Monte Carlo approach; (2) evaluation of vir
253 on as a prior probability distribution for a Markov-chain Monte Carlo evaluation of the posterior for
255 generated from a nonidentifiable model, the Markov-chain Monte Carlo results recover much more infor
257 We use epidemiological models, Bayesian Markov-chain Monte Carlo, and advanced spatial statistic
263 ion in heterogeneous landscapes and Bayesian Markov-chain-Monte-Carlo inference to estimate dispersal
264 to reduce the state space of the underlying Markov chain of a PBN based on a criterion that the redu
265 x local operator, such as the generator of a Markov chain on a large network, a differential operator
266 under a simple population dynamics model, a Markov chain on the fold network is constructed, and the
267 onstructing and sampling from a finite-state Markov chain on the proposed points such that the overal
268 o, adaptive walks can be modeled as a simple Markov chain on the space of possible fitness ranks with
269 e present a practical method for simplifying Markov chains on a potentially large state space when de
270 this paper, we describe a methodology called Markov Chain Ontology Analysis (MCOA) and illustrate its
274 s of 2-component mixtures of continuous-time Markov chains, representing two sub-populations with dis
275 ov Chain Monte Carlo algorithm with Multiple Markov Chain sampling to model local reconnection on 491
276 and time-resolved emission measurements and Markov chain simulations, we show that YO-to-YO resonanc
278 ylo-grammars, probabilistic models combining Markov chain substitution models with stochastic grammar
279 following: Given the presented state in the Markov chain, take a random walk from the presented stat
280 sis such as solution of scalar equations and Markov chain techniques, as well as numerical simulation
281 transition of each parcel is described by a Markov chain that incorporates the successional dynamics
282 nformation from rapidly equilibrating coarse Markov chains that sample marginal distributions of the
283 ed association rules constituting an ergodic Markov chain, the overall most important rules in the it
290 ve several powerful algorithms, ranging from Markov Chains to message passing to gradient descent pro
291 landscape with the algebraic properties of a Markov chain transition matrix and allows us to derive g
292 represented as a bipartite network, to which Markov chain updates (switching-steps) are applied.
294 etect that a presented state of a reversible Markov chain was not chosen from a stationary distributi
296 f probabilistic Boolean networks is a finite Markov chain, we define the network sensitivity based on
297 given a value function for the states of the Markov chain, we would like to show rigorously that the
298 n is the large state space of the underlying Markov chain, which poses a serious computational challe
299 nd modern treatment of Mendel's laws using a Markov chain will make this step possible, and it will o
300 amics are modeled according to a first-order Markov chain, with containment represented as an absorbi
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