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1 n the antibiotic-insensitive archaebacterium Methanococcus.
2 proteolipid type found in eukaryotes and in Methanococcus.
5 consecutive helices (alpha-alpha-alpha), and Methanococcus, alternating helix-strand structures (beta
7 rent gene loss complementary to that seen in Methanococcus and Halobacterium, Thermoplasma acidophilu
8 present evidence for a "nitrogen regulon" in Methanococcus and Methanobacterium species containing ge
9 eropyrum) and euryarchaeota (Methanosarcina, Methanococcus, Archaeoglobus, Thermoplasma), with multip
10 dies of the mesophiles in the archaeal genus Methanococcus have become commonplace following the rece
11 tions found in yeast fibrillarin Nop1 to the Methanococcus homologue structure reveals that many of t
12 trophicus (MTH), and the extreme thermopiles Methanococcus igneus (MIG) and Methanococcus jannaschii
13 perthermophiles Methanococcus jannaschii and Methanococcus igneus were studied to determine whether m
15 ng candidate enzymes previously evolved from Methanococcus janaschii Tyr synthetase for unnatural ami
16 hose of Haemophilus influenzae (a bacteria), Methanococcus jannaschii (an archaeon), and yeast (a euk
17 ted from ribosomes and whole-cell lysates of Methanococcus jannaschii (approximately 1,800 genes) usi
20 motetrameric tRNA splicing endonuclease from Methanococcus jannaschii (MJ), indicating its role in ca
21 n of C8-substituted-nucleotides by FtsZ from Methanococcus jannaschii (Mj-FtsZ) and Bacillus subtilis
23 e thermopiles Methanococcus igneus (MIG) and Methanococcus jannaschii (MJA)) were characterized for t
27 a(+)/Ca(2+)-exchange function of an NCX from Methanococcus jannaschii (NCX_Mj) and report its 1.9 ang
30 for three other I-1-Pases (from the archaea Methanococcus jannaschii and Archaeoglobus fulgidus, and
31 udy, these potential RubisCO sequences, from Methanococcus jannaschii and Archaeoglobus fulgidus, wer
32 for highly similar proteins were detected in Methanococcus jannaschii and Bacillus stearothermophilus
34 synthetase in the genomes of Archae such as Methanococcus jannaschii and Methanobacterium thermoauto
35 he only known exceptions are the euryarchaea Methanococcus jannaschii and Methanobacterium thermoauto
36 the mechanism of cysteinyl-tRNA formation in Methanococcus jannaschii and Methanobacterium thermoauto
38 residing in the transcription factor IIB of Methanococcus jannaschii and Methanocaldococcus vulcaniu
39 thermolithotrophicus, and hyperthermophiles Methanococcus jannaschii and Methanococcus igneus were s
40 s and, in part, its operon organization with Methanococcus jannaschii and Methanothermobacter thermoa
41 dehydrogenase genes, MJ1425 and MJ0490, from Methanococcus jannaschii and one from Methanothermus fer
42 rom47 Aquifex aeolicus,47 Bacillus subtilis, Methanococcus jannaschii and Pseudomonas aeruginosa that
43 screening for GC-rich regions in the AT-rich Methanococcus jannaschii and Pyrococcus furiosus genomes
44 ied in the hyperthermophilic marine archaeon Methanococcus jannaschii and shown to catalyze the final
45 FEN1 enzymes from Archaeoglobus fulgidus and Methanococcus jannaschii and the DNA polymerase I homolo
46 om several archaea, including the methanogen Methanococcus jannaschii and the sulfate-reducing archae
47 binant versions of the F and P subunits from Methanococcus jannaschii and used them in in vitro and i
48 Escherichia coli, Haemophilus influenzae and Methanococcus jannaschii are involved in 64 unique fusio
49 s of two adjacent genes in the chromosome of Methanococcus jannaschii are similar to the amino and ca
52 oth Methanobacterium thermoautotrophicum and Methanococcus jannaschii but is unrelated to canonical L
53 derived from the tyrosyl-tRNA synthetase of Methanococcus jannaschii can be used to genetically enco
55 family, the archaeal Sulfolobus shibatae and Methanococcus jannaschii CCA-adding enzymes, are also ca
56 f the hyperthermophiles Aquifex aeolicus and Methanococcus jannaschii complement enteric amtB mutants
57 sequence of the hyperthermophilic methanogen Methanococcus jannaschii contains homologs of most genes
58 rial S. typhimurium CorA and by the archaeal Methanococcus jannaschii CorA, which bear only 12% ident
59 the structure of the DNA-binding core of the Methanococcus jannaschii DNA topoisomerase VI A subunit
62 a, Saccharomyces cerevisiae for Eukarya, and Methanococcus jannaschii for Archaea, provide the basis
70 asma genitalium, Haemophilus influenzae, and Methanococcus jannaschii genomes for unidentified or mis
71 but homologous enzymes, the hyperthermophile Methanococcus jannaschii has an enzyme, DCD-DUT, that ha
72 beta-semialdehyde dehydrogenase (ASADH) from Methanococcus jannaschii has been determined to 2.3 angs
73 ble 8-oxoguanine (oxoG) DNA glycosylase from Methanococcus jannaschii has been expressed in Escherich
78 lactate synthase encoded by the ComA gene in Methanococcus jannaschii have suggested that ComA, which
79 lutionary distant alpha-crystallin domain in Methanococcus jannaschii heat-shock protein 16.5 reveals
82 vergence, we induced the ordered oligomer of Methanococcus jannaschii Hsp16.5 to transition to either
83 y studies of five different sHSP assemblies: Methanococcus jannaschii HSP16.5, human alphaB-crystalli
86 le cassette of known structure, MJ0796, from Methanococcus jannaschii indicates that at least two bin
88 mple, a previous putative gene (MJ1604) from Methanococcus jannaschii is now annotated as a phosphofr
92 ative third catalytic residue from a related Methanococcus jannaschii LonB, also faces the solvent an
96 old classes have been proposed: one based on Methanococcus jannaschii MJ0577 (1MJH) that binds ATP, a
99 h are typified by Bacillus subtilis YqeV and Methanococcus jannaschii Mj0867, and we predict that Rim
104 recognition model based on the structures of Methanococcus jannaschii Mre11 (MjMre11) bound to longer
106 onsense codon, TAG, together with orthogonal Methanococcus jannaschii or Escherichia coli tRNA/synthe
108 e forms part of a multidomain protein, as in Methanococcus jannaschii peptidyl-prolyl cis/trans isome
115 uence of the extremely thermophilic archaeon Methanococcus jannaschii provides a wealth of data on pr
116 he hyperthermophiles Thermotoga maritima and Methanococcus jannaschii resulted in fivefold higher T.
117 vely high similarity to the sequences of the Methanococcus jannaschii reverse gyrase (48% overall ide
118 y the recently solved X-ray structure of the Methanococcus jannaschii SecY complex, is a matter of co
119 changer (NCX) antiporter NCX_Mj protein from Methanococcus jannaschii shows an outward-facing conform
121 coli, and their ability to bind to human and Methanococcus jannaschii SRP RNA were determined in vitr
122 genes from the thermophilic archaeabacterium Methanococcus jannaschii that code for the putative cata
123 nucleotide triphosphate pyrophosphatase from Methanococcus jannaschii that shows a preference for pur
124 oded by bacterial genomes ranged from 8% for Methanococcus jannaschii to 37% for Mycoplasma pneumonia
126 he crystal structures of two substrate-bound Methanococcus jannaschii tyrosyl aminoacyl-tRNA syntheta
127 o alter or expand the genetic code, only the Methanococcus jannaschii tyrosyl tRNA synthetase and tRN
129 ocedure, we apply it to the design of mutant Methanococcus jannaschii tyrosyl-tRNA synthetase (M.jann
134 , we demonstrate that the Thi4 ortholog from Methanococcus jannaschii uses exogenous sulfide and is c
135 of subunit H, in solution, from the archaeon Methanococcus jannaschii using multidimensional nuclear
137 ucture of the endonuclease from the archaeon Methanococcus jannaschii was determined to a resolution
138 In the work presented here, aIF2beta from Methanococcus jannaschii was expressed in Escherichia co
139 ease (FEN) of the hyperthermophilic archaeon Methanococcus jannaschii was expressed in Escherichia co
140 for observed IMP cyclohydrolase activity in Methanococcus jannaschii was purified and sequenced: its
141 monella serovar Typhimurium and the archaeon Methanococcus jannaschii were purified and shown to reta
142 e have investigated three such proteins from Methanococcus jannaschii with the strongest overall sequ
143 udy, a conserved archaeal gene (gi1500322 in Methanococcus jannaschii) was identified as the best can
144 Cd1 from Clostridium difficile, and Mj2 from Methanococcus jannaschii) were overproduced in Escherich
146 structure of the fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A r
148 structure of a small heat-shock protein from Methanococcus jannaschii, a hyperthermophilic archaeon.
150 the genomic sequence of the hyperthermophile Methanococcus jannaschii, addressing questions of its ph
152 for chorismate mutase (CM) from the archaeon Methanococcus jannaschii, an extreme thermophile, was su
154 tyrosyl-tRNA synthetases from S. cerevisiae, Methanococcus jannaschii, and Bacillus stearothermophilu
155 genome sequence of an autotrophic archaeon, Methanococcus jannaschii, and its 58- and 16-kilobase pa
156 Archaeoglobus fulgidus, Pyrococcus furiosus, Methanococcus jannaschii, and Methanobacterium thermoaut
157 neumoniae, Synechocystis sp. strain PCC6803, Methanococcus jannaschii, and Pyrobaculum aerophilum).
158 lap endonuclease from Archaeglobus fulgidus, Methanococcus jannaschii, and Pyrococcus furiosus, respe
159 en purified to homogeneity from the archaeon Methanococcus jannaschii, and the gene encoding it has b
160 In this report, it is shown not only that Methanococcus jannaschii, Archaeoglobus fulgidus, Methan
163 t variations were observed in (G+C)% and, in Methanococcus jannaschii, in the frequency of the dinucl
164 rophosphatase gene from the archaebacterium, Methanococcus jannaschii, introduced into E. coli, incre
165 isolated from the hyperthermophilic Archaea Methanococcus jannaschii, is a member of the small heat-
166 hose genomes have been sequenced completely (Methanococcus jannaschii, Methanobacterium thermoautotro
167 no orthologs for these genes can be found in Methanococcus jannaschii, Methanobacterium thermoautotro
168 letely sequenced and are publicly available: Methanococcus jannaschii, Methanobacterium thermoautotro
169 is sp. genome nor in the archaeal genomes of Methanococcus jannaschii, Methanobacterium thermoautotro
170 ately halophilic and non-halophilic Archaea (Methanococcus jannaschii, Methanosarcina mazei, Methanob
172 segment, RCK domain-containing channel from Methanococcus jannaschii, MjK2, by testing its general f
173 Haemophilus influenzae, Helicobacter pylori, Methanococcus jannaschii, Mycoplasma pneumoniae, M. geni
174 ations for 81 gel patterns for Homo sapiens, Methanococcus jannaschii, Pyro coccus furiosus, Shewanel
175 d metal ion, which is different from that of Methanococcus jannaschii, strongly supports an active ro
176 habditis elegans, Methanopyrus kandleri, and Methanococcus jannaschii, suggesting a conservation of i
177 ynthetic organisms, viz. the archaebacterium Methanococcus jannaschii, the eubacterium Escherichia co
179 nd with the exception of the archaebacterium Methanococcus jannaschii, the numbers of multidrug efflu
180 ingle polypeptide of 645 amino acids, as for Methanococcus jannaschii, the Sulfolobus solfataricus SS
181 bound to full-length SRP RNA of the archaeon Methanococcus jannaschii, to eukaryotic human SRP RNA, a
183 available archaeal genome sequence, that of Methanococcus jannaschii, were analysed using the BLAST2
184 For the prolyl-tRNA synthetase (ProRS) of Methanococcus jannaschii, which activates both proline a
185 esolution (1.5-1.9 A) structures of PSP from Methanococcus jannaschii, which define the open state pr
186 rium Haemophilus influenzae and the archaeon Methanococcus jannaschii, which had been previously misi
187 of the orthogonal tyrosine pair derived from Methanococcus jannaschii, which has been used to selecti
206 was recently shown that Methanocaldococcus (Methanococcus) jannaschii and other anaerobic archaea sy
209 ion would predict that it would, between the Methanococcus lineage (which is the deepest of the metha
210 closely related homologue from the mesophile Methanococcus maripaludis (Mma) is nearly inert as a tra
212 cci, we isolated nine conditional mutants of Methanococcus maripaludis after transformation of the wi
215 ions with alternative methanogenic partners, Methanococcus maripaludis and Methanospirillum hungatei,
216 s of H(2) metabolism in the model methanogen Methanococcus maripaludis and using formate as an additi
219 ble, mesophilic, hydrogenotrophic methanogen Methanococcus maripaludis contains 1,722 protein-coding
220 Here we show that ThiI from the archaeon Methanococcus maripaludis contains a [3Fe-4S] cluster th
221 oacylation of the same tRNA with cysteine by Methanococcus maripaludis cysteinyl-tRNA synthetase.
222 or switch-off, in the methanogenic archaeon Methanococcus maripaludis does not involve detectable co
225 roscopy, we show that an archaeal pilus from Methanococcus maripaludis has a structure entirely diffe
227 Here we report the crystal structure of a Methanococcus maripaludis homologue of Rce1, whose endop
228 d structures of the archaeal chaperonin from Methanococcus maripaludis in both a peptide acceptor (op
229 al structure of the archaeal chaperonin from Methanococcus maripaludis in several nucleotides bound s
236 en assimilation in the methanogenic archaeon Methanococcus maripaludis is regulated by transcriptiona
238 in Hildenborough growing syntrophically with Methanococcus maripaludis on lactate were used to develo
239 d, at 3.2-A resolution, the structure of the Methanococcus maripaludis phosphoseryl-tRNA synthetase (
240 t has recently been reported for an archaeal Methanococcus maripaludis pili filament and an archaeal
241 or switch-off, in the methanogenic archaeon Methanococcus maripaludis requires both nifI(1) and nifI
242 the hydrogenotrophic, methanogenic archaeon Methanococcus maripaludis S2 using a derivative of the T
243 narum NRC-1), a hydrogenotrophic methanogen (Methanococcus maripaludis S2), an acidophilic and aerobi
247 ) in the aminoacylation reaction for the two Methanococcus maripaludis synthetases SepRS (forming Sep
248 ere we report the construction of mutants of Methanococcus maripaludis that are defective in each put
252 and tRNA(Ser), we introduced mutations into Methanococcus maripaludis tRNA(Sec) to investigate how M
254 we report that during continuous culture of Methanococcus maripaludis under defined nutrient conditi
255 a source of hydrogen gas for the methanogen, Methanococcus maripaludis using a capillary assay with a
256 gar-biosynthetic proteins were identified in Methanococcus maripaludis using phylogenetic and gene cl
257 rium Desulfovibrio vulgaris and the archaeon Methanococcus maripaludis were established and followed
260 h canonical LysRS activity was purified from Methanococcus maripaludis, and the gene that encodes thi
262 y of apbC/NBP35 homologs from three archaea: Methanococcus maripaludis, Methanocaldococcus jannaschii
263 cture of FlaK, a preflagellin peptidase from Methanococcus maripaludis, solved at 3.6 A resolution.
264 omplex from the hydrogenotrophic methanogen, Methanococcus maripaludis, that contains heterodisulfide
265 Transfer RNAs from Methanococcus vannielii, Methanococcus maripaludis, the thermophile Methanococcus
268 ween the nif and glnK(1) promoter regions of Methanococcus maripaludis, where two operators are prese
279 strates the utility of genetic approaches in Methanococcus that have not been widely used in the meth
280 e Methanococcus voltae (MVO), the thermopile Methanococcus thermolithotrophicus (MTH), and the extrem
281 es of adenylate kinases from the thermophile Methanococcus thermolithotrophicus and the mesophile Met
282 , Methanococcus maripaludis, the thermophile Methanococcus thermolithotrophicus, and hyperthermophile
285 A source of the recombinant monofunctional Methanococcus vannielii PR-AMP cyclohydrolase has been d
287 ctions of these cysteines in the enzyme from Methanococcus vannielii, a series of biochemical studies
291 ogenic members of the Archaea: the mesophile Methanococcus voltae (Mv), the thermophile M. thermolith
292 ogenic members of the Archaea (the mesophile Methanococcus voltae (MVO), the thermopile Methanococcus
293 occus thermolithotrophicus and the mesophile Methanococcus voltae have been solved to resolutions of
294 integrative expression vectors contained the Methanococcus voltae histone promoter and multiple cloni
295 ructural analysis shows that archaebacterial Methanococcus voltae RadA(D302K) (MvRAD51(D302K)) and Hs
299 l genes are most closely related to those of Methanococcus, whereas the majority of operational genes
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