ライフサイエンスコーパス: NCBI

1 OG (Eukaryotic Orthologous Groups) database (NCBI).

2 tional Center for Biotechnology Information (NCBI).

3 tional Center for Biotechnology Information (NCBI).

4 tional Center for Biotechnology Information (NCBI).

5 tional Center for Biotechnology Information (NCBI).

6 tional Center for Biotechnology Information (NCBI).

7 tional 142 strains with genomes available at NCBI.

8 may be annotated with gene information from NCBI.

9 em is integrated with all other databases at NCBI.

10 ) than to Drosophila proteins/genes (18%) in NCBI.

11 nbank U00096 are transmitted from EcoGene to NCBI.

12 pring are comparable to known sequences from NCBI.

13 is thaliana published in the GEO database of NCBI.

14 will be exchanged with a similar database at NCBI.

15 as Gene Ontology and other databases within NCBI.

16 sequencing consortiums and those provided by NCBI.

17 as Gene Ontology, and other databases within NCBI.

18 Strikingly, one pathogenic mutation T233A (NCBI accession no.

19 raft genome of the bacterium was determined (NCBI accession numbers AHBC01000001 through AHBC01000103

20 rinciples behind the NCBI Taxonomy Database; NCBI and EBI papers on the recently launched BioSample d

21 es include more explicit reporting about the NCBI and Ensembl annotation releases being compared, new

22 able molecular profiling datasets taken from NCBI and HapMap.

23 files, while public archives such as ENA and NCBI and large international collaborations such as the

24 from 14 apple genotypes were downloaded from NCBI and mapped against a reference EST assembly to iden

25 mproved curation, mapping of genomes to both NCBI and RDP taxonomies, and refined tools for querying

26 es, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewe

27 tional Center for Biotechnology Information (NCBI) and Ensembl genome annotation pipelines.

28 tional Center for Biotechnology Information (NCBI) and European Bioinformatics Institute (EBI).

29 anizing hub for many of the resources at the NCBI, and provides a means for clustering elements withi

30 icy for eukaryotic genome annotation via the NCBI annotation pipeline.

31 data access in advance of its deposition at NCBI, as well as browsable tracks of alignments against

32 The NCBI Assembly database (www.ncbi.nlm.nih.gov/assembly/)

33 nces to generate a draft assembly, CHM1_1.1 (NCBI AssemblyDB GCA_000306695.2).

34 owa at dmk-brain.ecn.uiowa.edu/ATGC/ and the NCBI at ftp.ncbi.nlm.nih.gov/pub/kristensen/ATGC/atgc_ho

35 http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http:/

36 http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http:/

37 Microbiome Project were aligned against the NCBI bacterial taxonomy database and the Comprehensive A

38 cripts for downloading and parsing data from NCBI BioSample and BioProject into the database.

39 also provides online analysis tools such as NCBI BLAST and Batch BLAST.

40 ) of engineered ZFPs, and direct querying of NCBI BLAST servers for identifying potential off-target

41 The NCBI BLAST URL is http://blast.ncbi.nlm.nih.gov.

42 , sequence similarity search (e.g. FASTA and NCBI BLAST), multiple sequence alignment (e.g. Clustal O

43 ensitivity as the query-indexed BLAST, i.e., NCBI BLAST, or they can only support nucleotide sequence

44 6-fold end-to-end speedup over multithreaded NCBI BLAST.

45 search, delivers identical hits returned to NCBI BLAST.

46 fold end-to-end speedup over single-threaded NCBI BLAST.

47 LAST produces identical alignment results as NCBI-BLAST and its computational speed is much faster th

48 In comparison to the sequential NCBI-BLAST, the speedups achieved by GPU-BLAST range mos

49 mplementation is based on the source code of NCBI-BLAST, thus maintaining the same input and output i

50 BLAST, an accelerated version of the popular NCBI-BLAST.

51 accelerate BLASTX and BLASTP-basic tools of NCBI-BLAST.

52 putational speed is much faster than that of NCBI-BLAST.

53 accelerates MegaBLAST--the default module of NCBI-BLASTN.

54 Speedups achieved by H-BLAST over sequential NCBI-BLASTP (resp. NCBI-BLASTX) range mostly from 4 to 1

55 y H-BLAST over sequential NCBI-BLASTP (resp. NCBI-BLASTX) range mostly from 4 to 10 (resp. With 2 CPU

56 GPUs, H-BLAST can be faster than 16-threaded NCBI-BLASTX.

57 e Bookshelf data format is XML tagged in the NCBI Book DTD (Document Type Definition), modeled after

58 Mb region (positions 44,394,495-45,364,167; NCBI build 37), we found evidence for at least three ind

59 es in more than 95% of the reference genome (NCBI Build 37).

60 tional Center for Biotechnology Information (NCBI) build-37] and functionally classified using the KO

61 ith other NCBI molecular databases, books at NCBI can be used to provide reference information for bi

62 c regions can also be searched for using the NCBI Clone Finder tool, which accepts queries based on s

63 s an expansion and replacement of the former NCBI Clone Registry and has records for genomic and cell

64 tional Center for Biotechnology Information (NCBI) Clone DB is an integrated resource providing infor

65 The NCBI Conserved Domain Database (CDD) consists of a colle

66 These sets correspond to NCBI Conserved Domain Database alignments, which have be

67 high-throughput RNA-sequencing studies, the NCBI Conserved Domain Database, sequences from pre-genom

68 databases such as Entrez Protein database at NCBI contain information about publications associated w

69 e sequences of STEC strains available in the NCBI database indicates that LAA PAI is exclusively pres

70 any previously characterized protein in the NCBI database.

71 tional Center for Biotechnology Information (NCBI) database contained >2 million viral genome sequenc

72 tional Center for Biotechnology Information (NCBI) database records.

73 for SNP genotyping, a remote BLAST window to NCBI databases, and remote sequence retrieval from GenBa

74 phenotype combination, adds value from other NCBI databases, assigns a distinct accession of the form

75 n between the Epigenomics resource and other NCBI databases, including the Gene database and PubMed.

76 Unlike other NCBI databases, such as GenBank and Gene, which have a s

77 ited homology to previous annotations within NCBI databases, such as parvovirus.

78 nother twenty-six reported variants from the NCBI dbSNP database that have yet to be studied to predi

79 chine learning approach for DNorm, using the NCBI disease corpus and the MEDIC vocabulary, which comb

80 erOne achieves high performance on diseases (NCBI Disease corpus, NER f-score: 0.829, normalization f

81 h a web-based demonstration and links to the NCBI disease corpus.

82 athogen metadata, populate it with data from NCBI, easily query the data, and obtain visual summaries

83 classification of project data submitted to NCBI, EBI and DDBJ databases.

84 ies, and linking to other databases, such as NCBI, Ensembl and Reactome, a wide variety of different

85 enerated by distilling gene predictions from NCBI, Ensembl and VEGA.

86 l and manual genome annotations generated by NCBI, Ensembl and Vega/HAVANA.

87 hat they are consistently represented on the NCBI, Ensembl, and UCSC Genome Browsers.

88 owing number of biological resources such as NCBI, Ensembl, UniProt and Reactome.

89 It is a Java servlet that uses NCBI Entrez (eUtils) web services to interact with PubCh

90 Chem's bioassay data are integrated into the NCBI Entrez information retrieval system, thus making Pu

91 GenBank is accessible through the NCBI Entrez retrieval system that integrates data from t

92 GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from

93 GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from

94 GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from

95 Clone DB is indexed in the NCBI Entrez system and can be queried by fields that inc

96 e than thirty databases available within the NCBI Entrez system.

97 tional Center for Biotechnology Information (NCBI) Entrez retrieval system, which integrates data fro

98 since the initial publication describing the NCBI Epigenomics resource and currently consist of >3700

99 a and with wrapper functions for calling the NCBI eUtilities and PubChem PUG web services.

100 nding to host cells) sequence available from NCBI flu database, and showed an overall correspondence

101 Books at NCBI followed the route of journal articles in the PubMe

102 e Gene Expression Omnibus public database at NCBI following MIAME guidelines.

103 iously, there was no centralized approach at NCBI for collecting this information and using it across

104 llecTF entries are periodically submitted to NCBI for integration into RefSeq complete genome records

105 tional Center for Biotechnology Information (NCBI) for functional annotations of single nucleotide po

106 cations of 676 microbial organisms using the NCBI FTP database for the 16S rRNA.

107 all the species and sequences present in the NCBI GenBank and allows for a single step classification

108 datasets such as the nucleotide database in NCBI GenBank, metagenomic datasets in Camera, and the ma

109 etrieving all genomic DNA sequences from the NCBI GenBank, over 1 x 10(11) base pairs of 3.3 x 10(6)

110 Public databases such as the NCBI Gene Expression Omnibus contain extensive and expon

111 tted by users and imported directly from the NCBI Gene Expression Omnibus.

112 onal Center for Biotechnology Information's (NCBI) Gene database (www.ncbi.nlm.nih.gov/gene) integrat

113 tional Center for Biotechnology Information (NCBI) Gene database.

114 ing from the current human genome reference (NCBI Genome GRCh37)-a substantial fraction of the human

115 rrent versions of genome assemblies from the NCBI genomes FTP site.

116 alysis of The Cancer Genome Atlas (TCGA) and NCBI GEO data sets, which demonstrated inverse changes i

117 ) from various data sets freely available at NCBI GEO database.

118 ubsequently, we analyse a publicly available NCBI GEO gene expression dataset studying tumour bearing

119 lume and complexity of data sets archived at NCBI grow rapidly, so does the need to gather and organi

120 In collaboration with Georgia Tech, NCBI has developed a new approach to genome annotation t

121 tional Center for Biotechnology Information (NCBI) has been created to serve as a comprehensive publi

122 tional Center for Biotechnology Information (NCBI), HMMER, and MUSCLE; scaled them to tens of thousan

123 these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

124 these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

125 these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

126 etrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

127 etrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

128 etrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

129 etrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov.

130 etrieval and analysis services, begin at the NCBI homepage: www.ncbi.nlm.nih.gov.

131 summaries for figures in PubMed Central and NCBI Images.

132 IBIS is the NCBI Inferred Biomolecular Interaction Server.

133 tional Center for Biotechnology Information (NCBI) is a freely available archive for interpretations

134 tional Center for Biotechnology Information (NCBI) is a new resource that has been created to serve a

135 te at the National Center for Biotechnology (NCBI) is an important resource for searching and alignin

136 This article describes Bookshelf at NCBI: its growth, data handling and retrieval and integr

137 tional Center for Biotechnology Information (NCBI) maintains and curates a publicly available databas

138 Through integration with other NCBI molecular databases, books at NCBI can be used to p

139 upplementary data are available at ftp://ftp.ncbi.nih.gov/pub/aravind/UMA/MVB12.html.

140 nd presented on the web and through FTP (ftp.ncbi.nih.gov/pub/GTR/_README.html).

141 ce code freely available for download at ftp.ncbi.nih.gov/pub/wolf/COGs/COGsoft/.

142 s services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

143 The NCBI BLAST URL is http://blast.ncbi.nlm.nih.gov.

144 s services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

145 e accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

146 s services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

147 e accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

148 is services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov.

149 is services, begin at the NCBI homepage: www.ncbi.nlm.nih.gov.

150 e accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

151 The NCBI Assembly database (www.ncbi.nlm.nih.gov/assembly/) provides stable accessioning

152 Sample databases are available at http://www.ncbi.nlm.nih.gov/bioproject and http://www.ncbi.nlm.nih.

153 w.ncbi.nlm.nih.gov/bioproject and http://www.ncbi.nlm.nih.gov/biosample, respectively.

154 ce code for DNorm is available at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/DNorm, along with a

155 tracts are available in PubTator: http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator .

156 PubTator is publicly available at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/.

157 cts are available for download at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/pub/tmVar

158 freely available for download at http://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/HA_Predict/index.

159 th manual) is freely available at http://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/SimBoolNet

160 potheses testing, is available at http://www.ncbi.nlm.nih.gov/CBBresearch/qmbp/mn/enrich/.

161 ervice and documentation can be found at www.ncbi.nlm.nih.gov/CBBresearch/qmbp/mn/itm_probe.

162 rl script are freely available at http://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html.ncbi/tap/

163 moloGene database is available at http://www.ncbi.nlm.nih.gov/CBBresearch/Wilbur/IRET/CLUSTERING_HOMO

164 on program, which is available at http://www.ncbi.nlm.nih.gov/CBBresearch/Yu/logoddslogo/index.html.

165 y for whole-genome epigenetic data sets (www.ncbi.nlm.nih.gov/epigenomics).

166 e for whole-genome epigenetic data sets (www.ncbi.nlm.nih.gov/epigenomics).

167 GenBank((R)) (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database t

168 GenBank((R)) (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database t

169 hotgun Assembly Sequence Database(http://www.ncbi.nlm.nih.gov/genbank/TSA.html) under accession numbe

170 logy Information's (NCBI) Gene database (www.ncbi.nlm.nih.gov/gene) integrates gene-specific informat

171 NCBI RefSeq genome collection http://www.ncbi.nlm.nih.gov/genome represents all three major domai

172 ez search and retrieval system at http://www.ncbi.nlm.nih.gov/genome.

173 The resource can be accessed at http://www.ncbi.nlm.nih.gov/genome/viruses/ and catalogs all public

174 e National Library of Medicine at http://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/inter

175 GEO is freely accessible at http://www.ncbi.nlm.nih.gov/geo/.

176 , USA, and is available online at http://www.ncbi.nlm.nih.gov/projects/gv/rbc/xslcgi.fcgi?cmd=bgmut.

177 cer examined here are available at ftp://ftp.ncbi.nlm.nih.gov/pub/FISHtrees.

178 and two datasets are available at ftp://ftp.ncbi.nlm.nih.gov/pub/FISHtrees.

179 rain.ecn.uiowa.edu/ATGC/ and the NCBI at ftp.ncbi.nlm.nih.gov/pub/kristensen/ATGC/atgc_home.html.

180 stem, is available for download at ftp://ftp.ncbi.nlm.nih.gov/pub/qmbp/qmbp_ms/RAId/RAId_Linux_64Bit

181 stem, is available for download at ftp://ftp.ncbi.nlm.nih.gov/pub/qmbp/qmbp_ms/RAId/RAId_Linux_64Bit.

182 one version can be downloaded from ftp://ftp.ncbi.nlm.nih.gov/pub/qmbpmn/SaddleSum/.

183 in the PubChem BioAssay database (ftp://ftp.ncbi.nlm.nih.gov/pubchem/Bioassay/).

184 The sequence data is available at www.ncbi.nlm.nih.gov/sra/?term(1/4)SRP075893 .

185 MDB and VAST+ can be accessed via http://www.ncbi.nlm.nih.gov/Structure.

186 MMDB can be accessed at http://www.ncbi.nlm.nih.gov/structure.

187 CDD can be accessed at http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml.

188 system and is also accessible via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml.

189 CDD can be accessed via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml.

190 The IBIS server is available at http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi and updated biw

191 his tool is publicly available at http://www.ncbi.nlm.nih.gov/tools/primer-blast.

192 The SRA is accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi

193 The SRA is now accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi

194 tional Center for Biotechnology Information (NCBI) non-redundant protein database approaches 90%.

195 e also makes it possible to index the entire NCBI nonredundant nucleotide sequence database (a total

196 dable clusters for several public databases (NCBI NR, Swissprot and PDB) at different identity levels

197 unpublished data (sequence available in the NCBI nucleotide and MIPS Wheat Genome Databases).

198 GenBank is accessible through the NCBI Nucleotide database, which links to related informa

199 tional Center for Biotechnology Information (NCBI) nucleotide and protein databases, the European Mol

200 tional Center for Biotechnology Information (NCBI) nucleotide database, their expression at the prote

201 formation is loaded for nodes annotated with NCBI numbers or UniProt identifiers and (optionally) Pro

202 35% and 2,704 genes, was annotated using the NCBI Prokaryotic Genomes Automatic Annotation Pipeline.

203 tional Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the

204 tional Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the

205 of the traits on miRNA obtained through the NCBI PubMed database search (adjusted P = 0.024).

206 tional Center for Biotechnology Information (NCBI) ray-finned fish ( Actinopterygii ) database, resul

207 tional Center for Biotechnology Information (NCBI) recently announced '1000 prokaryotic genomes are n

208 ons for human and mouse genes extracted from NCBI Reference Sequence (RefSeq) and Drosophila genes fr

209 NCBI Reference Sequence (RefSeq) genomes for viruses, pr

210 tional Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collecti

211 tional Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collecti

212 The NCBI RefSeq database is used for this; if a reference se

213 ularly updated following new releases of the NCBI RefSeq database.

214 NCBI RefSeq genome collection http://www.ncbi.nlm.nih.go

215 ases, including the clustering of all 54,118 NCBI RefSeq genomes in 33 CPU h; real-time database sear

216 (INSDC) and the assembly represented in the NCBI RefSeq project.

217 JGI Phytozome and selected subcollections of NCBI RefSeq.

218 official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-gen

219 tional Center for Biotechnology Information (NCBI) repositories: Gene Expression Omnibus (GEO) and Se

220 tional Center for Biotechnology Information (NCBI) represent a large collection of more than 35,000 a

221 NCBI resources include Entrez, the Entrez Programming Ut

222 NCBI resources include Entrez, the Entrez Programming Ut

223 Results are integrated and linked with other NCBI resources to ensure dissemination of the informatio

224 This has important implications for many NCBI resources, some of which are outlined below.

225 olymorphisms, mapped genetic markers, mapped NCBI Rosaceae genes, gene homologs and association of In

226 ate and interpret the masses of data held in NCBI's archival repositories.

227 NCBI's CDD, the Conserved Domain Database, enters its 15

228 NCBI's Conserved Domain Database (CDD) aims at annotatin

229 NCBI's Conserved Domain Database (CDD) is a resource for

230 already in the database of interest such as NCBI's dbSNP.

231 ess for ClinVar records is available through NCBI's E-utilities.

232 tation is maintained for proteins tracked by NCBI's Entrez database, and live search services are off

233 e browsing through NCBI's Entrez system, via NCBI's Entrez programming utilities (E-Utilities and Ent

234 e browsing through NCBI's Entrez system, via NCBI's Entrez programming utilities (E-Utilities) and fo

235 d domain annotation for sequences tracked in NCBI's Entrez protein database, which can be retrieved f

236 D, the Conserved Domain Database, is part of NCBI's Entrez query and retrieval system and is also acc

237 resentation of structure neighboring data in NCBI's Entrez query and retrieval system.

238 MMDB is tightly integrated with NCBI's Entrez search and retrieval system, and mirrors t

239 s available via interactive browsing through NCBI's Entrez system, via NCBI's Entrez programming util

240 s available via interactive browsing through NCBI's Entrez system, via NCBI's Entrez programming util

241 the mammalian and human subsets, changes to NCBI's eukaryotic annotation pipeline and modifications

242 Recent changes to NCBI's eukaryotic genome annotation pipeline provide hig

243 nto many annotation namespaces, e.g. KEGG or NCBI's GenBank.

244 NCBI's Gene Expression Omnibus (GEO) is a rich community

245 We use data from the NCBI's Gene Expression Omnibus (GEO) public repository t

246 available gene expression data deposited in NCBI's gene expression omnibus (GEO), such as the GEO we

247 falo.edu/halfon/spike/index.html and through NCBI's Gene Expression Omnibus (GEO; accession GSE24866)

248 Data mining of NCBI's GEO microarrays revealed strong coexpression betw

249 tions of the complete prokaryotic genomes in NCBI's Microbial Genome Project Database and applying st

250 re based on the controlled vocabularies that NCBI's Microbial Genome Project database uses to specify

251 An update on the NCBI's MMDB describes VAST+, an improved tool for protei

252 To this end, NCBI's Molecular Modeling Database (MMDB), which is base

253 Thus, the new NCBI's Prokaryotic Genome Annotation Pipeline (PGAP) rel

254 NCBI's PSI-BLAST utilizes iterative model building in or

255 on of curation and automated processing from NCBI's Reference Sequence project (RefSeq), collaboratin

256 ential growth of GenBank and the creation of NCBI's RefSeq database, we have developed a new database

257 The NCBI's Sequence Read Archive (SRA) promises great biolog

258 Raw data is available at NCBI's SRA with accession number PRJNA271645.

259 In NCBI's Variation submission portal, submitters upload ba

260 onal Center for Biotechnology Information's (NCBI's) Sequence Read Archive (SRA) via unique persisten

261 tional Center for Biotechnology Information (NCBI)'s database for gene-specific information.

262 tional Center for Biotechnology Information (NCBI)'s Entrez Utilities (E-Utilities or E-Utils) and th

263 r and from the baboon STLV-1 sequence in the NCBI sequence database.

264 a, and unidentified organisms present in the NCBI sequence database.

265 ated on various metagenomic samples from the NCBI Sequence Read Archive, suggesting 2- to 4-fold comp

266 t and primate samples from 884 series in the NCBI Sequence Read Archive.

267 is 1,571 bp longer (0.1%) than the reference NCBI sequence.

268 ne, sodA, and gyrB data are available at the NCBI, showing that gyrB is superior to 16S gene and sodA

269 Raw reads data are available under the NCBI SRA accession SRP066985.

270 anscriptome data are publically available at NCBI SRA: SRS965087.

271 icroRNA sequencing (miRNA-seq) datasets from NCBI-SRA and calculated expression profiles for differen

272 k genome records that can be modified by the NCBI staff annotators.

273 uences (ISs) compared to 35 in the reference NCBI strain, and these have resulted in the direct delet

274 s are made using the web-based BankIt or the NCBI Submission Portal.

275 www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html.ncbi/tap/

276 nformation and Voting theories that uses the NCBI Taxonomic Database hierarchy to assign taxonomy to

277 rees (with ExaML or RAxML-Light) for a given NCBI taxonomic group.

278 functional classifications as well as a GO, NCBI Taxonomy and KEGG Pathway Browser.

279 CBI, PubMed, PubMed Central (PMC), Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer

280 bMed, PubMed Central (PMC), Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer

281 The NCBI Taxonomy database is the standard nomenclature and

282 The NCBI Taxonomy Database now includes annotation of type m

283 ch as Pfam, SCOP, CATH, GO, InterPro and the NCBI taxonomy database.

284 l resources, such as GO, EC, UniProt and the NCBI Taxonomy database.

285 led explanation of the principles behind the NCBI Taxonomy Database; NCBI and EBI papers on the recen

286 weight calibration algorithm to consolidate NCBI taxonomy information in concert with unbiased sampl

287 ntities of Biological Interest ontology, the NCBI Taxonomy, the Protein Ontology, the Sequence Ontolo

288 We compared our trees to the NCBI taxonomy, to trees based on concatenated alignments

289 tional Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI) and t

290 tional Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI), and

291 tional Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EMBL-EBI)

292 Members of the collaboration, who are from NCBI, the Wellcome Trust Sanger Institute and the Univer

293 transcriptome assembly has been submitted to NCBI Transcriptome Shotgun Assembly Sequence Database(ht

294 The NCBI Viral Genomes Resource is a reference resource desi

295 Its genome sequence (NCBI) was determined 12 years ago.

296 all prokaryotes and eukaryotes available at NCBI, we observed that physico-chemical properties of di

297 clustering elements within other domains of NCBI web site, for internal linking between domains of t

298 r biological data made available through the NCBI Web site.

299 r biological data made available through the NCBI Website.

300 urated by a small group of scientists at the NCBI who use the current taxonomic literature to maintai