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1 NRPS/PK synthetase or synthase enzymes are generally act
2 n (C(2)-A(2)-PCP(2)-Cy(1)-A(1)-PCP(1)-Cy(0)) NRPS, and BlmIII is a three domain (A(0)-PCP(0)-Ox) NRPS
4 tion of a functional C domain excised from a NRPS should aid efforts at swapping NRPS domains between
5 ides the first genetic characterization of a NRPS assembly line that efficiently activates two anthra
6 d work constitutes the first example where a NRPS-embedded KR domain is employed for assembly of a fu
7 first example of a reductase domain within a NRPS scaffold shown to reduce a PCP-peptidyl thioester t
8 ins and molecules gave rise to modern aaRSs, NRPS, and ribosomal ensembles, first organized around no
13 eta-amino acid moiety into C-1027 follows an NRPS mechanism whereby biosynthetic intermediates are te
14 scribed here are the first indication for an NRPS subunit that homodimerization can occur and that th
16 Here, we present the first structure of an NRPS aryl carrier protein loaded with its substrate via
17 gly, the results are the first example of an NRPS condensation domain catalyzing a C-O bond (ester) f
20 he biochemical characterization of SgcC5, an NRPS condensation enzyme that catalyzes ester bond forma
25 to probe the functions of individual PKS and NRPS catalytic domains at the cellular metabolic level.
27 connection and compatibility of the PKS and NRPS modules mediated by the acyl carrier protein (ACP),
29 he first successful fusion between a PKS and NRPS that make highly divergent products, and four previ
30 and further revealed cross-talk with another NRPS pathway producing the anticancer fumitremorgins.
31 primers for NRPS genes failed to amplify any NRPS genes but (unexpectedly) yielded a band (among seve
33 e iterative catalytic mechanism of bacterial NRPSs is known, it remains unclear how fungal NRPSs crea
35 eport the production of the BlmIV and BlmIII NRPSs as an excised domain(s), module, or intact subunit
39 roles for secondary metabolites produced by NRPS in Aspergillus physiology, ecology, and fungal path
40 activating adenylation (A) domain of the CDA NRPS enables the incorporation of synthetic 3-methyl glu
41 cs could be more widely used to characterize NRPS-PKS pathways with unprecedented genetic and metabol
43 isolated variants of two different chimeric NRPSs with approximately 10-fold improvements in enzyme
45 n for the production of the Escherichia coli NRPS product enterobactin to map the surface of the aryl
46 adenylation (A) domains, and recent complete NRPS module structures provide support for this hypothes
47 is insufficient to account for the complete NRPS catalytic cycle and that the loaded state of the PC
48 standing of the protein domains that compose NRPS assembly lines is required before these megasynthet
49 erferometers or ring resonators, but to date NRPS requires TM-modes, so the TE-modes normally produce
50 metry-based proteomics to selectively detect NRPS and PKS gene clusters in microbial proteomes withou
51 in by the action of RapP/FkbP, a four-domain NRPS that also putatively serves to cyclize the chain af
52 dole side chain of FQF, and the three-domain NRPS Af12050 activates l-Ala as the adenylate, installs
54 cal modifications to carrier proteins during NRPS synthesis may impart directionality to sequential N
55 condensation (C) domain of the enterobactin NRPS EntF was excised from the multidomain synthetase us
59 proteomics approach to screen for expressed NRPSs or PKSs from bacteria with or without sequenced ge
60 P) bound thioester, there are relatively few NRPSs that have been shown to use a nicotinamide cofacto
61 n trans aminoacylation of BlmIII-PCP(0) (for NRPS-0), and (c) reveal that the C-terminus of the BlmIV
62 h in cis aminoacylation of BlmIV-PCP(1) (for NRPS-1) and in trans aminoacylation of BlmIII-PCP(0) (fo
64 eraction described here provides a model for NRPS, PKS and FAS function in general as T-TE-like di-do
65 DNA or cDNA, and (iv) degenerate primers for NRPS genes failed to amplify any NRPS genes but (unexpec
66 cteria, many of the gene clusters coding for NRPSs also code for a member of the MbtH-like protein su
68 uld be replaced with a domain from a foreign NRPS to create a chimeric assembly line that produces a
71 entially interesting bioactive products from NRPSs and PKSs, thereby augmenting the contribution of m
72 the difference between bacterial and fungal NRPS mechanisms and provide a framework for the enzymati
73 hranilate adenylation domain code for fungal NRPS and should facilitate detection and cloning of gene
75 o classes of siderophore biosynthesis genes: NRPS (non-ribosomal peptide synthase) genes and NIS (NRP
76 he bacterial colibactin pathway, a genotoxic NRPS-PKS hybrid pathway found in certain Escherichia col
80 tants and by characterizing LnmI as a hybrid NRPS-PKS megasynthetase, the NRPS module of which specif
83 RPS), polyketide synthases (PKS), and hybrid NRPS/PKS are of particular interest, because they produc
90 ons in mediating directional chain growth in NRPS and presents the first systematic exploration of ho
93 guillarum plasmid pJM1 that encodes a 78-kDa NRPS protein termed AngM, which is essential in the bios
95 we present the structures of the full-length NRPS EntF bound to the MLPs from Escherichia coli and Ps
98 The pyoverdine cluster contains four modular NRPS enzymes and 10-15 additional proteins that are esse
99 wo adjacent A. fumigatus ORFs, a monomodular NRPS Af12050 and a flavoprotein Af12060, are necessary a
100 ninyl or aminoisobutyryl unit by monomodular NRPS enzymes containing adenylation, thiolation, and con
101 T-C* and A*-T*-C) forms of these monomodular NRPS enzymes and by expression, purification, and assay
103 oading reductase (R) domain of mycobacterial NRPSs performs two consecutive [2 + 2]e(-) reductions to
105 tional Cy domain by excision from its native NRPS module, and examine both its protein-protein intera
107 , the predicted product of the NocA and NocB NRPSs is L-pHPG-L-Arg-D-pHPG-L-Ser-L-pHPG, a pentapeptid
109 e finding of common occurrence of nonmodular NRPS differs substantially from the current classificati
111 structures highlight the dynamic behavior of NRPS modules, including the module core formed by the ad
113 lts suggest a default role for MT domains of NRPS assembly lines in generating alpha-carbanionic spec
114 nce analysis indicates that the evolution of NRPS machineries was driven by a combination of common d
118 Here, we report the widespread occurrence of NRPS and PKS genetic machinery across the three domains
121 omain signatures", or functional readouts of NRPS-PKS domain contributions to the pathway-dependent m
125 in (PCP) and the condensation (C) domains of NRPSs, and curiously, these two domains are not associat
126 groundwork for the rational reengineering of NRPSs by swapping domains handling different substrates
128 h many structural and biochemical studies of NRPSs exist, few studies have focused on the energetics
129 nderscore the flexibility and versatility of NRPSs in both structure and mechanism for natural produc
130 1 [one PKS (N-terminus-KS-AT-MT1-KR-ACP) one NRPS module (Cy3-MT2-PCP3-TE-C-terminus)], was used as a
134 method for the fluorescent profiling of PKS, NRPS, and FAS multidomain modular synthases in their who
135 with a variety of purified recombinant PKS, NRPS, and FAS enzymes in vitro, we apply this duel label
136 oited for engineering hybrid PKS-PKS and PKS-NRPS (nonribosomal peptide synthetase) junctions and sug
142 ynthase-nonribosomal peptide synthetase (PKS-NRPS) that generates cyclo-acetoacetyl-L-tryptophan (cAA
143 ynthase-nonribosomal peptide synthetase (PKS-NRPS) that makes and releases cyclo-acetoacetyl-L-trypto
144 ynthase-nonribosomal peptide synthetase (PKS-NRPS), although two separate hexaketide chains are requi
145 ynthase nonribosomal peptide synthetase (PKS-NRPS), which resembles iterative enzymes known in fungi.
148 time insights into the intriguing hybrid PKS/NRPS machinery required for microsclerodermin formation.
149 rst adenylation domain of PksJ (a hybrid PKS/NRPS) and installation on the pantetheinyl arm of the ad
150 l peptide synthetases (NRPSs), and mixed PKS/NRPS systems, contain functional domains with similar fu
151 rate in vitro reconstitution of both the PKS/NRPS interface (EpoA-ACP/B) and the NRPS/PKS interface (
154 te NH(2)-Tyr-Gly-DGln-Ile-Ser-mPro-Leu/Phe-S-NRPS to yield a linear heptapeptide aldehyde that is sub
155 is elongated to alpha-KIC-Gly by the second NRPS module in PksJ as demonstrated by mass spectrometri
156 Using MbtH-like proteins from three separate NRPS systems, we show that these proteins copurify with
158 SOI isolators use nonreciprocal phase shift (NRPS) in interferometers or ring resonators, but to date
164 omal peptide synthetase-polyketide synthase (NRPS-PKS) system of the trans-acyl transferase (AT) type
165 eptide synthetases and polyketide synthases (NRPSs and PKSs, respectively), synthesize from simple, p
166 tions in the nonribosomal peptide synthesis (NRPS)/polyketide (PK) synthesis or transport of Ybt.
167 tides (NRPs) are produced by NRP synthetase (NRPS) enzymes that function as molecular assembly lines.
168 on modular nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) enzyme complexes by
169 e with both nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) modules acting along
170 ole-forming nonribosomal peptide synthetase (NRPS) as a probe, we localized a 172-kb DNA region from
173 domains of nonribosomal peptide synthetase (NRPS) assembly lines found in the Ybt or Pch synthetase
174 to encode a nonribosomal peptide synthetase (NRPS) containing two domains, peptidyl carrier protein a
178 of several nonribosomal peptide synthetase (NRPS) enzymes is used to combine the building blocks int
180 contains a nonribosomal peptide synthetase (NRPS) gene cluster (aebA-F) resembling that for enteroba
181 cryptic has nonribosomal peptide synthetase (NRPS) gene cluster in the human pathogen Aspergillus fum
182 (vph) and non-ribosomal peptide synthetase (NRPS) gene probes amplified from S. vinaceus genomic DNA
184 ring of the nonribosomal peptide synthetase (NRPS) in the daptomycin biosynthetic pathway was exploit
185 the ncpA-B nonribosomal peptide synthetase (NRPS) is co-linear in arrangement with respect to the pu
187 s a unique non-ribosomal peptide synthetase (NRPS) module comprised of condensation-adenylation-ketor
188 stand-alone nonribosomal peptide synthetase (NRPS) module, and four flavin-dependent oxidoreductases.
190 ries of six nonribosomal peptide synthetase (NRPS) modules distributed over three proteins and a vari
193 acteria use nonribosomal peptide synthetase (NRPS) proteins to produce peptide antibiotics and sidero
194 a 7-module nonribosomal peptide synthetase (NRPS) responsible for assembly of the full-length cyclom
195 of a novel non-ribosomal peptide synthetase (NRPS) system carried by a streptococcal integrative conj
197 ngle module nonribosomal peptide synthetase (NRPS) to synthesize polyketides conjugated to amino acid
198 ase (PKS), non-ribosomal peptide synthetase (NRPS), and shikimate pathway components, was identified
199 LNM hybrid nonribosomal peptide synthetase (NRPS)-acyltransferase (AT)-less type I polyketide syntha
200 enicol in a nonribosomal peptide synthetase (NRPS)-based pathway to yield the nitroaryl group of the
202 by a hybrid nonribosomal peptide synthetase (NRPS)/polyketide synthase (PKS) megasynthase followed by
204 nd ancient non-ribosomal protein synthetase (NRPS) modules gave rise to primordial protein synthesis
206 Type II nonribosomal peptide synthetases (NRPS) generate exotic amino acid derivatives that, combi
207 sembled by nonribosomal peptide synthetases (NRPS) using the conformationally restricted beta-amino a
208 omains of non-ribosomal peptide synthetases (NRPS), and firefly luciferase, perform two half-reaction
213 ication in nonribosomal peptide synthetases (NRPSs) and lay the groundwork for the rational reenginee
214 embled by non-ribosomal peptide synthetases (NRPSs) and modified by accessory enzymes in the cytoplas
221 (PKSs) and nonribosomal peptide synthetases (NRPSs) are two related families of modular megasynthases
223 osomes and nonribosomal peptide synthetases (NRPSs) carry out instructed peptide synthesis through a
225 mains from nonribosomal peptide synthetases (NRPSs) catalyze the final step in the biosynthesis of di
226 (PKSs) and nonribosomal peptide synthetases (NRPSs) comprise giant multidomain enzymes responsible fo
228 ins of the nonribosomal peptide synthetases (NRPSs) or polyketide synthases (PKSs) found in the biosy
230 thases and nonribosomal peptide synthetases (NRPSs) produce complex lipidic metabolites by using a th
231 number of nonribosomal peptide synthetases (NRPSs) that release their peptide products by hydrolytic
233 es (PKSs), nonribosomal peptide synthetases (NRPSs), and mixed PKS/NRPS systems, contain functional d
234 at the two nonribosomal peptide synthetases (NRPSs), BlmIV and BlmIII, are responsible for the biosyn
235 ediates in nonribosomal peptide synthetases (NRPSs), mass spectrometry is used to read out the kineti
236 codes two non-ribosomal peptide synthetases (NRPSs), NocA and NocB, predicted to encode five modules
237 id ligase, nonribosomal peptide synthetases (NRPSs), regulators, transporters, and tailoring enzymes.
248 ockout mutant, DeltaaebG V. harveyi, and the NRPS knockout mutant, DeltaaebF V. harveyi, do not produ
249 The key interaction between the PKS and the NRPS was dissected and reconstituted in trans by using s
250 the PKS/NRPS interface (EpoA-ACP/B) and the NRPS/PKS interface (EpoB/C) in the assembly line for thi
252 nfunctional, raising the question of how the NRPS-0 module activates and loads the Cys substrate to i
253 nmI as a hybrid NRPS-PKS megasynthetase, the NRPS module of which specifies for L-Cys and catalyzes t
254 expressed with NRPS proteins that modify the NRPS peptide products, ensure the availability of substr
258 d to switch the substrate specificity of the NRPS enzyme GrsA-PheA are then compared against the resu
261 main identified at the C-terminal end of the NRPS NcpB is predicted to catalyze an NAD(P)H-mediated h
262 In this process the terminal module of the NRPS plays a crucial role as it contains a unique recrui
270 nally, we incubated the polyene-PKS with the NRPS module in the presence of ornithine and adenosine t
271 on/dissociation of the P450 enzymes with the NRPS, followed by specific recognition of the peptide cy
272 also studied the excised TE domains from the NRPSs which biosynthesize the symmetric cyclic decapepti
275 llow diverse laboratories to spearhead their NRPS-PKS projects with benchtop mass spectrometers.
280 viously identified is part of the trimodular NRPS Af12080, which we predict is responsible for FQF fo
281 an R domain from Mycobacterium tuberculosis NRPS provides strong support to this mechanistic model a
282 trated by identifying the substrates for two NRPS modules from the pksN and pksJ genes that are found
283 nthetase containing two subunits, HMWP2 [two NRPS modules (N-terminus-ArCP-Cy1-A-PCP1 and Cy2-PCP2-C-
286 nsation domain VibH, indicating that the two NRPS enzymes share carrier protein recognition determina
288 D-alanine moiety, does not encode a typical NRPS initiation module with the expected A-PCP-E domains
290 at the excised TE domain from the tyrocidine NRPS can be used to generate an array of sizes of cyclic
291 utilized to identify orthologous and unique NRPS among the Aspergillus species examined, as well as
294 ly, a 2-aminoisobutyric acid (AIB)-utilizing NRPS module has been identified and reconstituted in vit
296 CPs in holo and substrate-loaded forms visit NRPS catalytic domains in a series of transient interact
298 en, additional proteins are coexpressed with NRPS proteins that modify the NRPS peptide products, ens
299 a few C-terminal reductases associated with NRPSs have been identified, the ncp reductase is the fir
300 e for VibF and establish that domains within NRPS dimeric modules can act on acyl chains in trans.
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