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1 ts when comparing Spartina to Sorghum and to Oryza.
2 p and nR of several of specimens of the same Oryza AA genome species provides insight into the evolut
4 Coix with those of Brachypodium, Setaria and Oryza allows us to infer how the region has evolved by a
6 genomics analyses of 20 O. glaberrima and 94 Oryza barthii accessions support the hypothesis that O.
8 ditional Oryza species, Oryza glaberrima and Oryza brachyantha, which diverged from O. sativa 1 and 1
9 lysis in other genera (Aegilops/Triticum and Oryza), Coffea genomes/subgenomes appeared to be dramati
10 8 regions from two additional Oryza species, Oryza glaberrima and Oryza brachyantha, which diverged f
12 ingly, the grain of African cultivated rice (Oryza glaberrima Steud.) typically is smaller than that
15 Oryza, which includes rice (Oryza sativa and Oryza glaberrima) and wild relatives, is a useful genus
17 rphisms in the rice species Oryza sativa and Oryza glaberrima, we find that DNA repair following tran
22 Oryza sativa, and its wild African relative, Oryza longistaminata, was analyzed using the new method.
25 new executor R gene derived from wild rice (Oryza rufipogon) that confers an extremely broad spectru
26 executor R gene derived from the wild rice (Oryza rufipogon) that confers an extremely broad spectru
27 transient growth inhibition response, rice (Oryza sativa 'Nipponbare') seedlings had a slow onset of
28 AtSHR), Brachypodium distachyon (BdSHR), and Oryza sativa (OsSHR1 and OsSHR2) function in patterning
29 motif, and promotes vertical shoot growth in Oryza sativa (rice) and Arabidopsis through influencing
30 332 NBS-LRR genes cloned from five resistant Oryza sativa (rice) cultivars for their ability to confe
32 ificance of this processing, we isolated two Oryza sativa (rice) mutants (fuct-1 and fuct-2) with los
33 of sequence similarity with LAZY1, a gene in Oryza sativa (rice) shown to participate in the early gr
34 hways in these domains for reference species Oryza sativa (rice) supported by published literature an
37 eaves of Zea mays (maize), a C(4) plant, and Oryza sativa (rice), a C(3) plant, using a statistical m
38 sperm cells and pollen vegetative cells from Oryza sativa (rice), and identified transcripts for appr
39 six prioritized key dietary protein sources: Oryza sativa (rice), Triticum aestivum (wheat flour), Le
43 transposon polymorphisms in the rice species Oryza sativa and Oryza glaberrima, we find that DNA repa
44 A. thaliana could also be applied to predict Oryza sativa and Saccharomyces cerevisiae essential gene
45 tes, both in the compatible interaction with Oryza sativa and the incompatible interaction with the r
46 tolerance to heat stress was investigated in Oryza sativa and two wild rice species, Oryza meridional
47 es in the Arabidopsis thaliana, Zea mays and Oryza sativa anther development pathways shows that anth
48 s designed a model to predict methylation in Oryza sativa based on genomic sequence features and gene
49 ed transcriptional regulatory networks (i.e. ORYZA SATIVA DEHYDRATION-RESPONSIVE ELEMENT BINDING PROT
51 From a library of 400 semi-randomly mutated Oryza sativa FNR, the top hit enabled a 60 % increase in
52 e were able to improve the annotation of the Oryza sativa genome compared to using the standard MAKER
53 tion of genetic variants across the complete Oryza sativa genome, using the 40 million single nucleot
55 we report that RNAi-mediated suppression of Oryza sativa GRXS17 (OsGRXS17) improved drought toleranc
57 lag leaves of wild-type and transgenic rice (Oryza sativa japonica 'Kitaake') plants expressing ISOPE
58 metabolites in mature seeds of a wide panel Oryza sativa japonica and indica cultivars, revealing co
61 osaic virus-35S promoter in rice transgenic [Oryza sativa L. cv. Pusa Basmati 1 (PB1)] plants confers
62 e canopies of a high-yielding rice cultivar (Oryza sativa L. cv. Takanari) with a common cultivar (cv
65 termined the crystal structures of DHAR from Oryza sativa L. japonica (OsDHAR) in the native, ascorba
67 A new resequencing analysis of weedy rice (Oryza sativa L.) biotypes illuminates distinct evolution
68 ice is not of the same origin as Asian rice (Oryza sativa L.) but rather is an entirely different spe
69 crop species closely related to Asian rice (Oryza sativa L.) but was independently domesticated in W
73 otosynthate allocation to the grain in rice (Oryza sativa L.) has been identified as an effective str
74 nd an interesting model monocot plant, rice (Oryza sativa L.) has recently received attention from mo
77 d larger bulk particles (BPs) in rice plant (Oryza sativa L.) tissues was evaluated using three ortho
80 ore relevant in inbred species such as rice (Oryza sativa L.), which are effectively haploid, allowin
82 ere, a series of expression vectors based on Oryza sativa MIR390 (OsMIR390) precursor was developed f
83 that in rice, transcript level of OsamiR395 (Oryza sativa miR395) increased under sulfate deficiency
84 TION-RESPONSIVE ELEMENT BINDING PROTEIN1 and ORYZA SATIVA No Apical Meristem, Arabidopsis Transcripti
88 expanded the expression domain of the rice (Oryza sativa ssp japonica) OsSHR2 gene, which we show is
90 e of five calmodulins known to be present in Oryza sativa that relays the increase of cytosolic [Ca(2
91 ublished data from S. bicolor, Zea mays, and Oryza sativa to identify a small suite of transcription
94 most devastating disease of cultivated rice (Oryza sativa) and a continuing threat to global food sec
95 rative biochemical characterization of rice (Oryza sativa) and Agave tequilana Rca isoforms demonstra
96 e annual short-day and long-day plants rice (Oryza sativa) and Arabidopsis (Arabidopsis thaliana), wh
97 s identified in genome-wide screens of rice (Oryza sativa) and Arabidopsis thaliana, and at least 10
98 al robustness of human (Homo sapiens), rice (Oryza sativa) and budding yeast (Saccharomyces cerevisia
99 class of SUMO protease gene family in rice (Oryza sativa) and demonstrate a critical role for OsOTS1
100 ond to heat stress as demonstrated for rice (Oryza sativa) and maize (Zea mays), suggesting fundament
103 We have cloned a miR395 gene from rice (Oryza sativa) and studied its function in plant nutritio
104 l as the antioxidant activity of black rice (Oryza sativa) and to study the stability in relation to
107 how virtual transposable elements from rice (Oryza sativa) are assayed for function in transgenic Ara
110 onstrate that OsARID3, a member of the rice (Oryza sativa) AT-rich Interaction Domain (ARID) family,
111 AL) gene and its potential function in rice (Oryza sativa) based on phylogenetic analyses and transge
112 Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) but poorly understood in maize (Zea mays).
113 between abiotic and biotic stresses in rice (Oryza sativa) by performing meta-analyses of microarray
115 ots as well as a related RDN gene from rice (Oryza sativa) can rescue the phenotype of rdn1-2 when ex
118 istance to bacterial blight disease of rice (Oryza sativa) caused by Xanthomonas oryzae pv. oryzae (X
119 Loss of DELLA activity in the monocot rice (Oryza sativa) causes complete male sterility, but not in
121 The crystallographic structure of a rice (Oryza sativa) cellulose synthase, OsCesA8, plant-conserv
122 tiling array for four fully sequenced rice (Oryza sativa) centromeres and used chromatin immunopreci
124 a 'fusion model' for the evolution of rice (Oryza sativa) chromosomes 2 and 3, implying that the gra
131 PCS genes-OsPCS1 and OsPCS2 in indica rice (Oryza sativa) cultivar, the OsPCS2 produces an alternati
132 or the response of five tropical Asian rice (Oryza sativa) cultivars to high temperatures, water defi
135 e regulation of starch biosynthesis in rice (Oryza sativa) endosperm is crucial in tailoring digestib
137 he much more GC-rich and heterogeneous rice (Oryza sativa) genome and have often been generalized as
138 the platform's capacity, plants of two rice (Oryza sativa) genotypes, Azucena and IR64, were grown in
140 enome-wide gene expression patterns of rice (Oryza sativa) growing in rainfed and irrigated fields du
141 nction of a stress-responsive putative rice (Oryza sativa) histone chaperone of the NAP superfamily:
143 ance was measured in five cultivars of rice (Oryza sativa) in canopy conditions with PAM fluorescence
144 mand for premium priced Indian Basmati rice (Oryza sativa) in world commodity market causing fraudule
148 that 70% of the overall Pi acquired by rice (Oryza sativa) is delivered via the symbiotic route.
152 is a ubiquitous human carcinogen, and rice (Oryza sativa) is the main contributor to iAs in the diet
154 identification of a specific stage in rice (Oryza sativa) leaf development (P3/P4 transition) when p
155 we have isolated and characterized the rice (Oryza sativa) LESION AND LAMINA BENDING (LLB) gene that
158 re, we report that overexpression of a rice (Oryza sativa) miR528 (Osa-miR528) in transgenic creeping
159 ation sequencing, we pyrosequenced two rice (Oryza sativa) mitochondrial genomes that belong to the i
160 In this study, we demonstrated that a rice (Oryza sativa) MULE, Os3378, is capable of excising and r
161 erization of a dominant SL-insensitive rice (Oryza sativa) mutant dwarf 53 (d53) and the cloning of D
162 d loss of responsiveness to AMF in the rice (Oryza sativa) mutant hebiba, reflected by the absence of
164 udy, we identified and characterized a rice (Oryza sativa) mutant line containing a 750 bp deletion i
169 tation of the BT1/BT2 ortholog gene in rice (Oryza sativa) OsBT increased NUE by 20% compared to wild
171 etermined the substrate specificity of rice (Oryza sativa) phytaspase by using the positional scannin
172 mospora indica on interactions between rice (Oryza sativa) plants and its root herbivore rice water w
173 sets of wheat (Triticum aestivum) and rice (Oryza sativa) plants as well as a unique virtual data se
176 representing a developing leaf cell of rice (Oryza sativa) primarily derived from the annotations in
178 e and drought are major constraints to rice (Oryza sativa) production in rain-fed farmlands, both of
181 ain and a serine/threonine kinase, the rice (Oryza sativa) protein XA21 confers resistance to a broad
183 The mechanism is not found in the rice (Oryza sativa) PSY1 5'UTR, consistent with the prevalence
185 m sequence of the KNOX gene Oskn2 from rice (Oryza sativa) resulted in isolation of OsGRF3 and OsGRF1
186 mensional quantification of changes in rice (Oryza sativa) RSA in response to the physical properties
190 t work on the cultivated microbiome in rice (Oryza sativa) shows that a wide diversity of bacterial s
192 ueprint of the genetic architecture of rice (Oryza sativa) stem nonstructural carbohydrates (NSC) at
194 ubisco with higher thermal sensitivity (e.g. Oryza sativa) than others (e.g. Lactuca sativa), intersp
196 of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the
197 dicago truncatula, Solanum lycopersicum, and Oryza sativa) to delineate open chromatin regions and tr
198 tified salt-responsive ERF1 (SERF1), a rice (Oryza sativa) transcription factor (TF) gene that shows
199 wo-component elements from the monocot rice (Oryza sativa) using several complementary approaches.
200 the node, internode and leaf sheath of rice (Oryza sativa) using synchrotron X-ray fluorescence (S-XR
201 that confers submergence tolerance in rice (Oryza sativa) via limiting shoot elongation during the i
203 LLA during infection of the model crop rice (Oryza sativa) with four different pathogens exhibiting d
204 and impact of BRs during infection of rice (Oryza sativa) with the root oomycete Pythium graminicola
205 similar in domain architecture to the rice (Oryza sativa) XA21 Binding Protein3, a defense protein.
207 transcription factor, SHINE (SHN), in rice (Oryza sativa), a model for the grasses, causes a 34% inc
209 piens), fly (Drosophila melanogaster), rice (Oryza sativa), and Arabidopsis (Arabidopsis thaliana) an
210 f proteins from Physcomitrella patens, rice (Oryza sativa), and Arabidopsis (Arabidopsis thaliana) wa
211 haranthus roseus, maize (Zea mays) and rice (Oryza sativa), and effectively validated predicted natur
212 en1 mutants from Arabidopsis thaliana, rice (Oryza sativa), and maize (Zea mays), we found 3' truncat
214 ng Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), and nonvascular plants, while particularl
215 hydrolase, and UAH are also present in rice (Oryza sativa), and orthologous genes occur in all other
216 rachypodium (Brachypodium distachyon), rice (Oryza sativa), and sorghum (Sorghum bicolor), suggesting
218 analysis with the sequenced genomes of rice (Oryza sativa), Brachypodium distachyon, sorghum (Sorghum
219 lar glucose transporter OsSWEET2b from rice (Oryza sativa), consists of an asymmetrical pair of tripl
220 tiple tissues of Arabidopsis thaliana, rice (Oryza sativa), human (Homo sapiens), and mouse (Mus musc
222 ,for resistance to bacterial blight of rice (Oryza sativa), is dependent on the effector genes presen
223 hough heat stress reduces seed size in rice (Oryza sativa), little is known about the molecular mecha
224 lysis of AS patterns in B. distachyon, rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum bicolo
225 comparison of the H3K27me3 targets in rice (Oryza sativa), maize, and Arabidopsis thaliana provided
226 y discovered transposable element from rice (Oryza sativa), mPing, and the genes required for its mob
227 erbicide-resistant weeds in crops; (3) rice (Oryza sativa), often infested with feral weedy rice, whi
228 urprisingly, a subfamily 2 member from rice (Oryza sativa), OsHKT2;4, has been proposed to form catio
229 Two NB-LRR protein-coding genes from rice (Oryza sativa), RGA4 and RGA5, were found to be required
230 eny blocks in Brachypodium distachyon, rice (Oryza sativa), sorghum (Sorghum bicolor) and barley (Hor
235 ial for chitin recognition, whereas in rice (Oryza sativa), the LysM-containing protein, CEBiP (for c
240 found in wheat (Triticum aestivum) and rice (Oryza sativa), this transgene increases maize yield by i
241 ruce (Picea abies) and the angiosperms rice (Oryza sativa), tobacco (Nicotiana tabacum), and Arabidop
243 ut of the three homologs identified in rice (Oryza sativa), we have functionally characterized OsbZIP
244 psis (Arabidopsis thaliana) to a crop, rice (Oryza sativa), we identified evolutionarily conserved N-
245 the positions of cenH3 nucleosomes in rice (Oryza sativa), which has centromeres composed of both th
276 P) approach from Arabidopsis thaliana toward Oryza sativa, and demonstrate its applicability in a var
277 nterspecific hybrid between cultivated rice, Oryza sativa, and its wild African relative, Oryza longi
278 stinct species such as Arabidopsis thaliana, Oryza sativa, and Physcomitrella patens to examine the d
279 gous chromosomes of Brachypodium distachyon, Oryza sativa, and Sorghum bicolor, whereas, by applying
281 rosophila melanogaste, Arabidopsis thaliana, Oryza sativa, Physcomitrella patens and Chlamydomonas re
282 er, Danio rerio, Homo sapiens, Mus musculus, Oryza sativa, Solanum lycopersicum and Zea mays) are ana
291 ty on cell interfaces in leaves of C3 (rice [Oryza sativa] and wheat [Triticum aestivum]) and C4 (mai
292 idopsis thaliana], Brassica napus, and rice [Oryza sativa]), and results are compared with manual ana
294 om Mutator-like transposable elements in ten Oryza species and the outgroup Leersia perieri, bridging
295 lineage-specific expansions observed between Oryza species were partly driven by directional selectio
296 d thousands of putative genes in each of the Oryza species, a large proportion of which have evidence
297 orthologous Cen8 regions from two additional Oryza species, Oryza glaberrima and Oryza brachyantha, w
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