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1 PER alone has no effect on CLOCK-BMAL1-activated transcr
2 PER and CRY proteins form heterodimers and suppress the
3 PER and TIM negatively feed back on CLK/CYC transcriptio
4 PER and TIM shift from the cytoplasm to the nucleus dail
5 PER for measuring rates of VF decay is a robust indicato
6 PER fragment alignment increased the coverage 3-fold com
7 PER fragment alignment with long-range splicing confirme
8 PER inhibits the activity of E75 on the Clk promoter, th
9 PER represses by displacing CLOCK-BMAL1 from promoters i
10 PER synthesis happens in a programmable, autonomous, in
11 PER- and DBT-containing protein complexes feed back to r
14 vates the aryl hydrocarbon receptor (AHR), a PER, ARNT, SIM (PAS) family transcription factor that re
17 se data indicate that TYF potently activates PER translation in pacemaker neurons to sustain robust r
24 nts, we show that the stabilities of CRY and PER are independently regulated, contrary to the expecta
30 clock cells, whereas CLK levels decrease and PER and TIM accumulation are delayed when nmo is overexp
33 rring through the Helix-Loop-Helix (HLH) and PER-ARNT-SIM (PAS) domains, is needed to convert the AhR
34 CRY proteins determine pacemaker period, and PER/CRY complexes have been proposed to afford mutual st
35 Therefore, interaction between the POR and PER is necessary for context-guided exploratory behavior
40 esults suggest that, in addition to CRYs and PERs, the GM129 protein contributes to the transcription
41 is susceptible to disruption by both FAD and PERs, suggesting a new avenue for pharmacological target
42 edure showed that PER-independent as well as PER-dependent mechanisms could sustain circadian express
43 an rhythms when physical interaction between PER and CKIdelta/epsilon was disrupted by overexpressing
45 member of the basic helix-loop-helix (bHLH)/PER-ARNT-SIM (PAS) transcription superfamily, is known t
49 t TIM attenuates transcriptional feedback by PER in cultured cells, suggesting that it holds PER in t
50 onal activation is rhythmically repressed by PER or PER-TIM to control circadian gene expression that
51 s may either be repressed or de-repressed by PER, depending on the particular promoter regulatory ele
54 the functional relationship between the CKI-PER and FBXL3-CRY pathways, we generated robust mechanis
55 of the circadian oscillator by altering CLK, PER, and TIM expression, thereby contributing to the gen
58 ns accumulate, form a large nuclear complex (PER complex), and bind the transcription factor CLOCK-BM
67 mparable with that of the perirhinal cortex (PER) with regard to the lateral entorhinal cortex (LEC).
71 ngle-particle EM of two purified cytoplasmic PER complexes revealed approximately 20-nm and approxima
73 t (DBT(S)), all mutants produce differential PER degradation profiles that show direct correspondence
76 important for phosphorylation of Drosophila PER by casein kinase I epsilon (CKI epsilon; doubletime
78 ms were eliminated and rhythms in endogenous PER abundance and phosphorylation were severely compromi
79 led to dramatically low levels of endogenous PER, while PER-binding, kinase-inactive DN-CKIepsilon di
80 ny by increasing cAMP and PKA, which enhance PER stability and decrease clock speed in intrinsically
82 ption and the known role of PDF in enhancing PER/TIM stability occur via independent pathways downstr
83 and epsilon (CK1delta/epsilon) are essential PER kinases, but it is clear that additional, unknown me
84 oups of dorsal neurons (DN1 and DN2) exhibit PER oscillation peaks coinciding with two activity bouts
85 t the domain functions in part to facilitate PER phosphorylation within the cytoplasm, which in turn
86 on PER-dependent behavioral tasks and fewer PER principal neurons are activated by stimuli, but the
92 (2), and with the de novo recalculation from PER predictions were 2.95 dB and 17.49 dB(2), respective
93 tor consisting of two basic helix-loop-helix PER-ARNT-SIM (bHLH-PAS) domain protein subunits, CLOCK a
94 r and a member of the basic helix-loop-helix PER/ARNT/SIM family of chemosensors and developmental re
95 S3 are members of the basic helix-loop-helix-PER-ARNT-SIM (bHLH-PAS) family, and their genetic defici
97 to afford mutual stabilization, although how PER and CRY proteins with contrasting stabilities intera
98 promotes PER and CLK phosphorylation and how PER and CLK phosphorylation contributes to transcription
99 man A1PI (Hu-recA1PI) expressed in the human PER.C6 cell line using an array of analytical and bioche
100 d genetic studies have shown that changes in PER phosphorylation kinetics are associated with changes
105 creased the abundance of basal and inducible PER proteins, which facilitated circadian clock resettin
106 horylation at these sites does not influence PER stability, timing of nuclear entry, or transcription
107 onditioning), during shock (remote ischemic "PER"conditioning), or during resuscitation (remote ische
108 e ischemic preconditioning, remote ischemic "PER"conditioning, and remote ischemic "POST"conditioning
110 that both proline-rich (PR) and PERIOD-like (PER) domains, in addition to the critical role of C2 dom
111 r members of these phyla, and a new lineage, PER, via cultivation-independent recovery of 49 partial
112 ion on dPER that is conserved with mammalian PERs and contains the major in vivo DBT binding domain,
115 Characterization of PER lacking this motif (PER Delta) shows that it is important for phosphorylatio
119 s from these mice, daytime levels of nuclear PER proteins, and PER-CRY-CLOCK complexes were elevated.
120 le electron microscopy (EM) revealed nuclear PER complexes purified from mouse liver to be quasi-sphe
122 independent, additive biochemical actions of PER and CRY in circadian control, and complement genome-
127 can regulate temporal abundance/activity of PER by phosphorylation-mediated degradation and cellular
133 cts on PER, and TIM regulates the control of PER by PP1, although it does not affect PP2A action on P
136 er, in the presence of CRY, nuclear entry of PER inhibits transcription by displacing CLOCK-BMAL1 fro
139 he absence of CRY very limited expression of PER in a few dorsal clock neurons is able to mediate beh
140 n light:dark can be rescued by expression of PER in either LNv or DN1p clock cells and does not requi
141 K in these mutants rescues the expression of PER in the central clock, but fails to restore behaviora
142 s study, however, constitutive expression of PER, and not CRY1, severely disrupted the clock in fibro
144 extracts, we elucidate the dual functions of PER as repressor and de-repressor in a context-dependent
145 NB1 is required for timely nuclear import of PER/CRY in the negative feedback regulation of the circa
149 is required for the nuclear localization of PER and point to a key role for the TIM NLS in the regul
153 that is driven primarily by oscillations of PER and CRY, which inhibit their own transcriptional act
154 (S) and tau mutations on the oscillations of PER phosphorylation suggest that the mutations shorten t
155 circadian rhythms by controlling the pace of PER synthesis and presents a novel layer of regulation f
159 fact, much of the reduced phosphorylation of PER in the new tim mutant appears to result from the cyt
162 ces in running speed, as the firing rates of PER interneurons did not show significant velocity modul
164 monstrates that the speed and rhythmicity of PER phosphorylation are controlled by the balance betwee
165 ns are activated by stimuli, but the role of PER interneurons in these altered circuit properties in
167 We conclude that optical stimulation of PER at different frequencies can alter visual recognitio
168 findings suggest that optical stimulation of PER at specific frequencies can predictably alter recogn
171 With advanced age, rats show deficits on PER-dependent behavioral tasks and fewer PER principal n
172 NEMO/NLK kinase at the "per-short" domain on PER stimulates phosphorylation by DOUBLETIME (DBT/CK1del
175 Despite their potentially crucial effects on PER, it has not been demonstrated in a mammalian system
177 c cues and suggest that some phosphosites on PER proteins can modulate the pace of downstream behavio
178 on the centrally located DBT docking site on PER and partially counterbalanced by protein phosphatase
179 1772) identify a key phosphorylation site on PER that recruits the F-box protein Slimb to trigger PER
181 ylation by DBT at other more distal sites on PER, including those required for recognition by the F b
182 spectrometry to map phosphorylation sites on PER, leading to the identification of a number of "phosp
185 tivation is rhythmically repressed by PER or PER-TIM to control circadian gene expression that peaks
186 pt fragment using end reads from overlapping PERs, guided by the expected length of the fragment.
187 HIF is a basic helix-loop-helix (bHLH)-PAS (PER-ARNT-SIM) heterodimer composed of an oxygen-labile H
188 drocarbon receptor (AHR) belongs to the PAS (PER-ARNT-SIM) family transcription factors and mediates
200 uent with24 h) clocks in animals are PERIOD (PER) proteins, transcriptional regulators that undergo d
204 ted to the core circadian clock gene PERIOD (PER), results in arrhythmic molts and continuously abnor
205 ME (CRY) dampens temperature-induced PERIOD (PER)-LUCIFERASE oscillations in dorsal clock neurons.
206 phosphorylation, and degradation of PERIOD (PER) and TIMELESS (TIM) proteins govern period length.
207 n M cells decreases the amplitude of PERIOD (PER) cycling in DN1 neurons, suggesting that SIK3 non-ce
208 ster, the idea that nuclear entry of PERIOD (PER) is controlled by its partner protein TIMELESS (TIM)
209 s the progressive phosphorylation of PERIOD (PER) proteins, which is highly dependent on casein kinas
211 the emergence of a novel pattern of period (PER) synchrony whereby two subgroups of dorsal neurons (
212 necessary for the phosphorylation of PERIOD (PER), a transcriptional repressor, and CLOCK (CLK), a tr
213 bt mutations have similar effects on period (PER) protein phosphorylation by the fly and vertebrate e
214 s in the levels of the clock protein Period (PER) as well as more modest effects on Timeless (TIM).
216 rcadian oscillations of the proteins PERIOD (PER) and TIMELESS (TIM) are hallmarks of a functional cl
217 sms by which the circadian repressor PERIOD (PER) inhibits CLOCK/CYCLE (CLK/CYC)-mediated transcripti
218 ter by the transcriptional repressor PERIOD (PER), indicating that the majority of CLK targets are re
219 Mounting evidence suggests that PERIOD (PER) proteins play a central role in setting the speed (
220 imers activate the expression of the period (PER) and cryptochrome (CRY) genes acting as transcriptio
223 y a feedback loop in which the three PERIOD (PER) proteins, acting in a large complex, inhibit the tr
225 by a negative feedback loop in which PERIOD (PER) proteins accumulate, form a large nuclear complex (
228 raction with its direct target gene products PER and CRY, suggesting that the ratio between the negat
229 onships, a light pulse causes more prominent PER degradation in pdf(01) circadian neurons than in wil
230 ependent transcription, but how DBT promotes PER and CLK phosphorylation and how PER and CLK phosphor
233 ian CRYs associate with the Period proteins (PERs) and together inhibit the transcription of their ow
234 ng was observed in both young and aged rats, PER interneurons recorded from old animals had lower fir
235 uce the concept of primer exchange reaction (PER) cascades, which grow nascent single-stranded DNA wi
238 g sites in the hTERT proximal exonic region (PER) and determine their functional relevance in mediati
241 damage suggests that photoenzymatic repair (PER) is an important DNA repair mechanism used by marine
242 Taken together with a previously reported PER structure in which alphaF extends, these data indica
243 he fraction of the transcriptional repressor PER that is nuclear and suppression of per and tim RNA l
244 The structure of a central, 346-residue PER fragment reveals two associated PAS (Per-Arnt-Sim) d
247 as other neuronal subgroups exhibit a single PER peak coinciding with one of the two activity bouts.
250 d protein kinase A (PKA) activity stabilizes PER, in S2 tissue culture cells and in fly circadian neu
252 time-lapse fluorescence microscopy we study PER stability in the presence of DBT and its short, long
254 y the kinase Doubletime (DBT) and subsequent PER turnover is an essential step in the functioning of
255 , additional kinases are predicted to target PER, TIM, and/or CLK to promote time-specific transcript
256 ation or transcriptional repression and that PER phosphorylation is dispensable for repressing CLK-de
257 Finally, an SCN graft procedure showed that PER-independent as well as PER-dependent mechanisms coul
258 e nucleus daily, and the length of time that PER and TIM reside in the cytoplasm is an important dete
259 ate molting cycles in much the same way that PER-based oscillators drive rhythmic behaviors and metab
266 These findings provide a function for the PER complex and a molecular mechanism for circadian cloc
270 R to MEC are functionally different from the PER-to-LEC counterpart in providing an excitatory drive
271 molecular event recorder that records in the PER transcript the order in which distinct RNA inputs ar
272 -induced mutation, early doors (Edo), in the PER-ARNT-SIM (PAS) domain dimerization region of period
274 his study, we showed that stimulation of the PER could increase or decrease exploration of novel and
275 r cells demonstrate that a sub-region of the PER exhibits strong transcriptional repressive activity.
276 rotein (PYP), a 125-residue prototype of the PER-ARNT-SIM (PAS) domain superfamily of signaling prote
277 rily regulates the accumulating phase of the PER-CRY repressive complex by controlling the nuclear im
281 criptional inhibitory complexes and that the PER complex thereby rhythmically delivers histone deacet
285 Deep sampling of the transcriptome using the PER protocol presents the opportunity to reconstruct the
286 Our analysis indicates that PSF within the PER complex recruits SIN3A, a scaffold for assembly of t
287 e found that in mouse liver nuclei all three PERs, both CRYs, and Casein Kinase-1delta (CK1delta) are
288 periodicity is determined primarily through PER phosphorylation kinetics set by the balance between
290 LE (CLK-CYC) activators and PERIOD-TIMELESS (PER-TIM) repressors to drive rhythmic transcription peak
296 n clock is built on a feedback loop in which PER and CRY proteins repress their own transcription.
297 atically low levels of endogenous PER, while PER-binding, kinase-inactive DN-CKIepsilon did not, sugg
300 ow unite REV-ERB-alpha and REV-ERB-beta with PER, CRY and other components of the principal feedback
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