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1 PIR also maintains NREF, a non-redundant reference datab
2 PIR can strongly influence the timing of spikes on rebou
3 PIR clones could form DNA-damage-induced RAD51 nuclear f
4 PIR maintains the Protein Sequence Database (PSD), an an
5 PIR technology enabled our team to precisely describe th
6 PIR-A and PIR-B are activating and inhibitory Ig-like re
7 PIR-A and PIR-B, paired immunoglobulin-like receptors en
8 PIR-ALN includes 529 alignments that can be used to deve
9 PIR-ALN is currently being distributed as a single ASCII
10 PIR-B coligation with the IgE receptor (FcepsilonRI) inh
11 PIR-B contains four ITIM motifs and is thought to be an
12 PIR-B negatively regulates macrophage functions in respo
13 PIR-B(-/-) BMMphi also produced more nitrite and TNF-alp
14 PIR-B(-/-) bone marrow-derived macrophages (BMMphi) fail
15 PIR-B(-/-) mice have more inflammatory cells in the live
16 PIR-B(-/-) mice were found to be more susceptible to Sal
17 PIR-B-deficient bone marrow eosinophils underwent compar
18 PIR-LAESI offers a 20-30 mum vertical resolution ( appro
19 PIR-LAESI was further used to image the distribution ins
20 PIR-LAESI was used to map the distribution of endogenous
21 PIR-NREF provides a timely and comprehensive collection
22 MBL proteins organized with more than 36 000 PIR superfamilies, 145 000 families, 4000 domains, 1300
24 In 1995 RESID was publicly released as a PIR-International text database distributed on CD-ROM an
26 significantly less likely than those with a PIR of at least 5 to report visiting an eye care provide
27 10.4 is shown to recognize an allelic PIR-A/PIR-B determinant on cells from BALB/c but not C57BL/6 m
29 e receptors (PIRs) that serve as activating (PIR-A) and inhibitory (PIR-B) receptors on B lymphocytes
31 the paired Ig-like receptors of activating (PIR-A) and inhibitory (PIR-B) types for modifying an IgE
32 rine paired Ig-like receptors of activating (PIR-A) and inhibitory (PIR-B) types, we isolated PIR hom
33 tibody 10.4 is shown to recognize an allelic PIR-A/PIR-B determinant on cells from BALB/c but not C57
36 phages, two inhibitory receptors, SHPS-1 and PIR-B, are the major proteins binding to the tyrosine ph
38 ngs suggest that the disruption of PIR-A and PIR-B balance affects their regulatory roles in host def
39 determine the functional roles of PIR-A and PIR-B in primary bacterial infection, PIR-B-deficient (P
40 PIR allotype are expressed whereas PIR-A and PIR-B molecules bearing the maternal allotype are not.
41 elic expression of the polymorphic PIR-A and PIR-B molecules, and possibly of their human Ig-like tra
43 Although mast cells produced both PIR-A and PIR-B, PIR-B was found to be preferentially expressed on
50 1 dephosphorylates specific sites on BIT and PIR-B while protecting other sites from dephosphorylatio
51 membrane potential, endogenous bursting, and PIR properties could be observed in the intact nervous s
53 itory receptors (ILT3 and ILT4 in humans and PIR-B in rodents) and low levels of costimulatory and ad
54 ess with conjugate excitation-inhibition and PIR provides a reinforcing and evolutionarily advantageo
56 omprehensive fragmentation of these PIRs and PIR-labeled cross-linked peptides with low-energy collis
57 ession of PIR-B, an inhibitory receptor, and PIR-A, an activating receptor; demonstrate the requireme
60 onal information, the Swiss-Prot, TrEMBL and PIR protein database activities have united to form the
61 niProt Knowledgebase (Swiss-Prot, TrEMBL and PIR-PSD) using the standardized vocabulary of the Gene O
63 erived macrophages, masking of PIR-B by anti-PIR mAb or genetic deletion of PIR-B shows significantly
65 membrane glycoproteins, which we identify as PIR-B/p91A and the signal-regulatory protein (SIRP) fami
68 tation-tagged literature corpus developed at PIR was used to evaluate the system for finding phosphor
69 ch as paired immunoglobulin-like receptor B (PIR-B) and their function regulating eosinophil accumula
70 eptor paired immunoglobulin-like receptor B (PIR-B) in the regulation of macrophage function in innat
71 on of paired immunoglobulin-like receptor B (PIR-B), also known as leukocyte immunoglobulin-like rece
72 ficient in paired immunoglobulin receptor B (PIR-B), an inhibitory receptor activated by SFKs, did no
73 gh mast cells produced both PIR-A and PIR-B, PIR-B was found to be preferentially expressed on the ce
74 tatistically significant association between PIR and BMI z score among preterm boys (betaPIR + beta P
75 cells were much more likely to display both PIR and autapse-induced firing than GAD2(+) cells, suppo
76 The motif sequences are retrieved from both PIR-International and SWISS-PROT databases, including a
79 abase has been maintained collaboratively by PIR-International, an international association of data
85 rimary bacterial infection, PIR-B-deficient (PIR-B(-/-)) and wild-type (WT) control mice were injecte
89 e systematic detection of annotation errors, PIR has extended its superfamily concept and developed t
92 indicated that MDSCs genetically ablated for PIR-B (Lilrb3(-/-)) underwent a specific transition to M
93 earched expressed sequence tag databases for PIR relatives to identify chicken expressed sequence tag
95 nsight supports a likely shared function for PIR-1 in C. elegans Furthermore, we show that DUSP11 mod
97 paBbeta, contained information necessary for PIR degradation, thereby explaining IkappaBalpha selecti
98 bservations point to a nonredundant role for PIR-B in the regulation of leukocyte integrin signaling.
99 suggest a physiological inhibitory role for PIR-B that is regulated by endogenous MHC class I-like l
100 sts of about 800 000 proteins collected from PIR-PSD, SWISS-PROT, TrEMBL, GenPept, RefSeq and PDB, wi
101 nsisting of more than 1 000 000 entries from PIR-PSD, SWISS-PROT, TrEMBL, RefSeq, GenPept, and PDB.
102 any multiple sequence alignment source (e.g. PIR and CLUSTAL formats), and is valuable for revealing
106 actor, the conserved RNA-phosphatase homolog PIR-1, is required for the processing of a putative ampl
108 h greater national and global investments in PIR capacity will be required to enable the scaling of e
109 on: diffuse spreading along the sinusoids in PIR-B(-/-) mice vs nodular restricted localization in WT
111 -A and PIR-B in primary bacterial infection, PIR-B-deficient (PIR-B(-/-)) and wild-type (WT) control
112 urons were either presynaptically inhibited (PIR; 11%) or excited (PER; 8%) when extracellular glucos
113 eptors of activating (PIR-A) and inhibitory (PIR-B) isoforms are expressed by many hematopoietic cell
114 serve as activating (PIR-A) and inhibitory (PIR-B) receptors on B lymphocytes, dendritic cells, and
115 eptors of activating (PIR-A) and inhibitory (PIR-B) types for modifying an IgE antibody-mediated alle
116 eptors of activating (PIR-A) and inhibitory (PIR-B) types, we isolated PIR homologues from a rat sple
118 phosphorylated insulin receptor interacting (PIR) domain between the PH (pleckstrin homology) and SH2
119 85-kD molecules exclusively intracellularly; PIR-A and FcRgammac cotransfectants expressed the PIR-A/
120 PIRL ablation with electrospray ionization (PIR-LAESI) mass spectrometry is demonstrated and charact
122 l surface molecules of approximately 120 kD, PIR-A transfectants expressed the approximately 85-kD mo
123 way, an RNA silencing role for the mammalian PIR-1 homolog (dual specificity phosphatase 11 [DUSP11])
126 beta(2)-microglobulin (beta(2)M) molecules, PIR-B served as a permissive checkpoint for IL-5-induced
128 nsmembrane and cytoplasmic domains of murine PIR-A3 showed the ability of PIR-A3 to physically intera
130 s, our findings suggest that nonconventional PIR degradation of IkappaBalpha may play a physiological
132 otation databases: Swiss-Prot, TrEMBL, NREF, PIR, Gene Ontology, KEGG, Entrez Gene, GenBank, GenPept,
133 mains of murine PIR-A3 showed the ability of PIR-A3 to physically interact with the FcepsilonRIgamma
134 y suppressing the proapoptotic activities of PIR-A, which were mediated by the Grb2-Erk-Bim pathway.
136 phism data and search tools, the addition of PIR gene superfamily classifications, phenotype data for
138 PIR-B by anti-PIR mAb or genetic deletion of PIR-B shows significantly impaired recognition of S. aur
141 In wild-type (wt) cells dephosphorylation of PIR-B was associated with maximal chemokine signaling, w
142 hese findings suggest that the disruption of PIR-A and PIR-B balance affects their regulatory roles i
144 e findings offer insights into the effect of PIR mutations on the evolution of BVM resistance in PI-e
147 define the coordinate cellular expression of PIR-B, an inhibitory receptor, and PIR-A, an activating
152 bone marrow-derived macrophages, masking of PIR-B by anti-PIR mAb or genetic deletion of PIR-B shows
155 ved constitutive tyrosine phosphorylation of PIR-B molecules on macrophages and B lymphocytes, irresp
156 Unexpectedly, tyrosine phosphorylation of PIR-B was not observed in most myeloid and B cell lines
159 data are the first to show the potential of PIR-A3 to deliver activation signals to macrophages and
160 riments were performed to define the role of PIR-B in the negative regulation of macrophage function
163 Surprisingly, we found that the strength of PIR increased slowly over multiple cycles of synaptic in
165 on network and demonstrate the usefulness of PIR technology for precision mapping of functional host-
166 he inhibitory effect of increased glucose on PIR neurons appears to be mediated by a presynaptic gamm
169 R amino acid sequences in a search for other PIR relatives led to the recognition of mammalian Fc rec
171 e that pp130 is the product of the mouse p91/PIR-B gene that encodes a member of the killer cell inhi
172 ates that PIR molecules bearing the paternal PIR allotype are expressed whereas PIR-A and PIR-B molec
173 otein family databases (Blocks + DOMO, Pfam, PIR-ALN, PRINTS, PROSITE, ProDom, PROTOMAP, SBASE, and S
174 he monoallelic expression of the polymorphic PIR-A and PIR-B molecules, and possibly of their human I
178 sessed by using the poverty to income ratio (PIR), were associated with changes in BMI z score among
179 ool) and lower income (poverty income ratio [PIR] <1.00 vs >/= 4.00) were consistently less likely to
180 h as in the case of post-inhibitory rebound (PIR), and no neurons were found that displayed plateau p
181 verse inhibition and postinhibitory rebound (PIR) excitation of the pFRG and postinspiratory feedback
182 ng IPSCs accelerates postinhibitory rebound (PIR) in TC neurons, and that increasing either the ampli
184 rease in the size of postinhibitory rebound (PIR) occurred with 5-HT application in all three cell ty
186 Many neurons exhibit postinhibitory rebound (PIR), in which neurons display enhanced excitability fol
187 their effect through the inhibitory receptor PIR-B since neutrophils and DCs from pir-b-/- mice were
188 we identify murine-paired Ig-like receptor (PIR)-B, and its human orthologs Ig-like transcript 2 and
189 ma)RIIB, gp49B1 and paired Ig-like receptor (PIR)-B, have shown that the molecules indeed suppress al
193 urine equivalents, paired Ig-like receptors (PIR), contain two additional immunoglobulin domains, but
194 al antibodies produced against a recombinant PIR protein identified cell surface glycoproteins of app
195 consists of more than 200,000 non-redundant PIR and SWISS-PROT proteins organized with more than 28,
196 sion consists of about 830 000 non-redundant PIR-PSD, SWISS-PROT, and TrEMBL proteins organized with
198 in the LN peripheral interfollicular region (PIR), DCs generate more frequent and stable interactions
199 rallel linear (SAM) and isotonic regression (PIR) methods identified 95 and 53 probe sets as dose-res
201 us [PLRV]) and protein interaction reporter (PIR), a revolutionary technology that couples a mass spe
203 s gap is policy and implementation research (PIR) that aims to produce generalizable evidence on what
205 , we observed that a PR inhibitor-resistant (PIR) HIV-1 mutant is unable to efficiently cleave the gp
207 ss-references, Protein Information Resource (PIR) and SWISS-PROT protein sequence database feature ta
217 than proposed for Pre-Industrial Revolution (PIR) conditions has important ecological, biogeochemical
218 These results demonstrate that rhythmic PIR activity is an emergent property of interactions bet
219 ceptors which resemble the six domain rodent PIR as well as the four domain LILR found in other speci
222 d homodimer associated with the cell surface PIR molecules was identified as the Fc receptor common g
223 FcRgammac chain association for cell surface PIR-A expression; and suggest that the level of FcRgamma
228 This comparative study illustrates that PIR-LAESI is an ion source for ambient mass spectrometry
229 C57BL/6) F1 hybrid offspring indicates that PIR molecules bearing the paternal PIR allotype are expr
231 miniphosphoproteomic approach revealed that PIR-B recruits activating kinases after LTB(4) but not e
244 n expression could differentially affect the PIR-A/PIR-B equilibrium in different cell lineages.
246 e the amount of experimental annotation, the PIR has developed a bibliography system for literature s
249 t has been maintained collaboratively by the PIR-International, an association of data collection cen
251 sequence database in the public domain, the PIR-International Protein Sequence Database, in collabor
253 tation was mapped to At5g18410, encoding the PIR/SRA1/KLK subunit of the ArabidopsisSCAR/WAVE complex
255 es/macrophages, and mast cells expressed the PIR molecules in varying levels, but T cells and NK cell
259 n also be obtained by anonymous FTP from the PIR FTP site at NBRF.Georgetown.edu, directory [ANONYMOU
261 ons requiring standardized annotation in the PIR-International Protein Sequence Database was large an
262 nt interrelationships among sequences in the PIR-International Protein Sequence Database, to spread a
265 n and promote database interoperability, the PIR-International employs rule-based and classification-
267 ing inverted repeats (PIR2), a member of the PIR family of fungal cell wall glycoproteins that protec
268 Stomata of an independent allele of the PIR gene (Atpir-1) showed reduced sensitivity to darknes
269 s. the pFRG and resultant modulations of the PIR in various excited and depressed states, leading to
271 resistance was delayed in the context of the PIR PR, and the SP1-A1V mutation was acquired most frequ
272 hway to AME resistance in the context of the PIR PR, we selected for resistance with an HIV-1 isolate
273 e findings suggest that further study of the PIR-A receptors should be aggressively pursued toward a
275 ts define the preferential expression of the PIR-B molecules on mast cells and an inhibitory potentia
276 s, we investigated the effect of loss of the PIR-B protein on integrin-mediated signaling in primary
278 bases and search tools are accessible on the PIR web site at http://pir.georgetown.edu/ and at the MI
280 bases and search tools are accessible on the PIR WWW site at http://pir.georgetown.edu and at the MIP
281 n Information Database (JIPID), produces the PIR-International Protein Sequence Database (PSD), the m
286 he database is freely accessible through the PIR Web site http://pir.georgetown.edu/pirwww/dbinfo/res
287 led scores perform slightly better; when the PIR database is used, Altschul-Gish scaled scores perfor
289 formationally destabilized compared with the PIR, whereas in the kinase-off state, the HAMP is more c
292 o the major protein (PDB, SWISS-PROT/TrEMBL, PIR-ALN, NCBI Taxonomy Browser) and literature (PubMed,
295 paternal PIR allotype are expressed whereas PIR-A and PIR-B molecules bearing the maternal allotype
297 or tyrosine-based inhibitory motifs, whereas PIR-A pairs with the Fc receptor common gamma chain to f
298 ay has been described, it is unknown whether PIR-A receptors can deliver activation signals to macrop
299 ines of evidence supporting a model in which PIR-B displays opposing but potent regulatory functions
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