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1 Pol I activity is commonly deregulated in human cancers.
2 Pol I is protected by its subunit A12.2, which decreases
3 Pol I occupancy of the coding region of the rDNA in THO
4 Pol I transcription in hpr1 or tho2 null mutants is dram
5 Pol I's mutational footprint suggests: (i) during leadin
10 th the eukaryotic RNAP subunits A43 and A14 (Pol I), Rpb7 and Rpb4 (Pol II), and C25 and C17 (Pol III
11 tream activation factor, is known to abolish Pol I transcription and derepress Pol II transcription o
12 monstrate that human SL1 can direct accurate Pol I transcription in the absence of UBF and can intera
13 Binding of initiation factor Rrn3 activates Pol I, fostering recruitment to ribosomal DNA promoters.
18 l RNA synthesis rates, rDNA copy number, and Pol I occupancy of the rDNA demonstrate that Spt5p plays
20 f typical rDNA silencing, including RENT and Pol I dependence, as well as a requirement for the Preis
21 n, however, which involves the silencing and Pol I-mediated transcriptional switching of subtelomeric
25 it RNA polymerases I and III (abbreviated as Pol I and Pol III), the first analysis of their physical
27 uclear RNA polymerases (Pols) referred to as Pols I, II, and III, each of which synthesizes a specifi
31 centrations that provide information on both Pol I's nucleotide addition and nuclease activities.
34 s transcription initiation and elongation by Pol I, identifying a new cellular target for the conserv
46 d on the initiation step of transcription by Pol I; however, recent studies in yeast and mammals have
48 majority of transcription in growing cells, Pol I regulation is poorly understood compared to Pol II
49 olve a structure of Saccharomyces cerevisiae Pol I-CF-DNA to 3.8 A resolution using single-particle c
50 BP]G*), is processed in a well-characterized Pol I family model replicative DNA polymerase, Bacillus
51 hese results suggest that (i) the beta clamp-Pol I interaction may be important for proper Pol I func
52 for the 5'-3' exonuclease Rat1 that degrades Pol I-associated transcripts destabilizing the transcrip
53 O(6)-(benzotriazol-1-yl)inosine derivatives (Pol-I and Pol-dI) have been synthesized reasonably effec
54 43 and A14 in the regulation of differential Pol I complexes assembly and subsequent promoter associa
60 X1, the exonuclease domains from E. coli DNA-Pol I, and the DNA polymerase of bacteriophage RB69.
63 onstrate that protein levels of an essential Pol I initiation factor, Rrn3, are reduced when Spt6 is
64 ved that Spt5 directly binds to an essential Pol I transcription initiation factor, Rrn3, and to the
65 nes, POLR1C and POLR1D, encode for essential Pol I/III subunits that form a heterodimer necessary for
66 nderscoring the parallels between eukaryotic Pol I, II, and III and archaeal transcription machinerie
68 architectural chromatin protein facilitating Pol I-mediated transcription of both protein coding gene
69 transcription factors have been defined for Pol I in mammals, the selectivity factor SL1, and the up
70 pt6-1004, we show that Spt6 is essential for Pol I occupancy of the ribosomal DNA (rDNA) and rRNA syn
74 o studies revealed a 'torpedo' mechanism for Pol I termination: co-transcriptional RNA cleavage by Rn
75 bunits that form a heterodimer necessary for Pol I/III assembly, and many TCS mutations lie along the
81 We report that TAF1B, a subunit of human Pol I basal transcription factor SL1, is structurally re
84 transcriptional control by RNA polymerase I (Pol I) and associated factors is well studied, the linea
87 ranscription initiation by RNA Polymerase I (Pol I) depends on the Core Factor (CF) complex to recogn
92 , transcription of rRNA by RNA polymerase I (Pol I) is an important target for the regulation of this
93 RNA gene transcription by RNA polymerase I (Pol I) is the driving force behind ribosome biogenesis,
94 , we identify a Drosophila RNA polymerase I (Pol I) regulatory complex composed of Under-developed (U
95 s transcribed from rDNA by RNA polymerase I (Pol I) to produce the 45S precursor of the 28S, 5.8S, an
97 1C and POLR1D) involved in RNA polymerase I (Pol I) transcription account for more than 90% of diseas
99 n that associates with the RNA polymerase I (Pol I) transcription machinery to suppress rRNA gene tra
100 inability to fully reactivate polymerase I (Pol I) transcription when cells exit stationary phase.
101 the selective inhibitor of RNA polymerase I (Pol I) transcription, CX-5461, effectively treats aggres
104 through interactions with RNA polymerase I (Pol I), and to a pair of DNA replication fork block site
105 that family, Escherichia coli polymerase I (Pol I), may also be able to bypass these large major gro
106 ranscription, catalyzed by RNA polymerase I (Pol I), plays a critical role in ribosome biogenesis, an
107 rated the critical role of RNA polymerase I (Pol I)-associated factor PAF53 in mammalian rRNA transcr
109 to function exclusively in RNA polymerase I (Pol I)-specific transcription of the ribosomal genes.
110 ess, TbISWI down-regulates RNA polymerase I (Pol I)-transcribed variant surface glycoprotein (VSG) ge
122 role in ribosome biogenesis, and changes in Pol I transcription rate are associated with profound al
124 bly and postpolymerase recruitment events in Pol I transcription, underscoring the parallels between
125 xpectedly, UBTF2, which does not function in Pol I transcription, is sufficient to regulate histone g
127 showed a small but reproducible increase in Pol I density in a region near the 5' end of the gene.
129 Consistent with a direct role for Mot1 in Pol I transcription, Mot1 also associates with the Pol I
130 ter cassette (mURA3) such that reductions in Pol I transcription induce growth on synthetic media lac
131 nclude that SWI/SNF plays a positive role in Pol I transcription, potentially by modifying chromatin
134 for SL1, including the TAF(I)41 subunit, in Pol I recruitment and, therefore, preinitiation complex
139 budding yeast, like most eukaryotes, inhibit Pol I transcription before segregation as a prerequisite
140 mplexes in the nucleolus, thereby inhibiting Pol I transcription and inducing apoptosis in cancer cel
142 t AC40 paralogs, one of which assembles into Pol I and the other of which assembles into Pol III.
147 ctron cryomicroscopy structures of monomeric Pol I alone and in complex with Rrn3, underscores the ce
150 zation of either Rrn7 N-terminal domain near Pol I wall or the tandem winged helix domain of A49 at a
151 with RNA polymerase II (Pol II), but neither Pol I- nor Pol III-transcribed regions in the budding ye
152 posure of the polymer-supported nucleosides, Pol-I and Pol-dI, to alcohol, phenol, thiol and amine nu
155 function in vivo and (ii) in the absence of Pol I, ssDNA gaps may persist in the dnaN159 strain, lea
159 activity results in decreased association of Pol I with rDNA and a reduction of Pol I transcription.
160 DHX33 knockdown decreased the association of Pol I with rDNA and caused a dramatic decrease in levels
162 nd ChIP experiments show that association of Pol I with the rRNA gene is reduced in RPS19-depleted ce
163 deprivation, cells induce rapid clearance of Pol I-Rrn3 complexes, followed by the assembly of inacti
164 date, the factors involved in the control of Pol I transcription elongation are poorly understood.
165 unction is required for efficient control of Pol I transcription in response to target of rapamycin (
168 icient rRNA transcription, or elimination of Pol I activity, which drives rRNA transcription, diminis
171 e degraded by proteasomes upon inhibition of Pol I activity by actinomycin D, L5 and L11 accumulate i
172 ent apoptotic cell death), the inhibition of Pol I transcription also demonstrates potent efficacy in
173 that Rpd3 is not required for inhibition of Pol I transcription by rapamycin, supporting the model t
174 Most strikingly, the acute inhibition of Pol I transcription reduces both the leukemic granulocyt
175 xamides have been evaluated as inhibitors of Pol I and activators of the destruction of RPA194, the P
178 ur findings indicate that elevated levels of Pol I partially suppress the temperature-sensitive growt
179 s from these cells support reduced levels of Pol I transcription; addition of SL1 to the extracts rai
182 A promoter in vivo, with concomitant loss of Pol I from the rDNA and reduced synthesis of the pre-rRN
187 he beta clamp stimulates the processivity of Pol I in vitro and that beta159 is impaired for this act
188 A194, the large catalytic subunit protein of Pol I holocomplex, and this correlates with cancer cell
189 oposed to act by facilitating recruitment of Pol I and essential basal factor SL1 to rDNA promoters.
192 uggest that SIRT7 is a positive regulator of Pol I transcription and is required for cell viability i
193 Spt5p, and, potentially, other regulators of Pol I transcription elongation play important roles in c
194 phosphorylation of three known regulators of Pol I, CDK2, AKT and AMPK, is altered during ribosomal s
197 eukaryotic cells, including the silencing of Pol I and Pol II transcribed genes, silencing of replica
198 fy distinct backtrack recovery strategies of Pol I and Pol II, shedding light on the evolution of cel
199 coilin with RPA-194 (the largest subunit of Pol I), and we further show that coilin can specifically
201 Their study reveals that three subunits of Pol I perform functions in transcription elongation that
202 vivo is fundamentally different from that of Pol I and whether the static behavior of Pol II factors
203 icine, are potent and specific inhibitors of Pol-I transcription, with IC(50) in vitro and in cells i
206 of UBF, Ser388 phosphorylated UBF, and other Pol I-related components (POLR1E, TAF1A, and TAF1C) rema
207 ntroduce a new nomenclature system for plant Pol I and Pol III subunits in which the 12 subunits that
208 anscriptional status of both RNA polymerase (Pol) I and II to control multiple steps of ribosome biog
210 pt5 directly associates with RNA polymerase (Pol) I and RNA Pol II in yeast through its central regio
211 ture of the 14-subunit yeast RNA polymerase (Pol) I enzyme at 12 A resolution using cryo-electron mic
212 the mechanisms that control RNA Polymerase (Pol) I transcription have primarily focused on the proce
213 itiation factor required for RNA polymerase (Pol) I transcription in Saccharomyces cerevisiae, contai
216 ynthesis of ribosomal RNA by RNA polymerase (Pol) I; however, previous studies only characterized def
217 e first time that the major DNA polymerases (Pol I and Pol III) and DNA ligase are directly involved
218 anslational modification of RNA polymerases (Pol) I and II by acetylation mediates the transcriptiona
220 her, these data indicate that Paf1C promotes Pol I transcription through the rDNA by increasing the n
221 ol I interaction may be important for proper Pol I function in vivo and (ii) in the absence of Pol I,
223 -kinase) and two other family members [PTRF (Pol I and transcription release factor) and SDPR] functi
225 n from nuclear extracts dramatically reduces Pol I transcription; addition of SL1 restores the abilit
226 products of proto-oncogenes can up-regulate Pol I, whereas tumor suppressor proteins can inhibit rRN
227 he rRNA gene promoter and directly regulates Pol I transcription re-initiation by stabilizing the ass
229 our data suggest that coilin acts to repress Pol I activity in response to cisplatin-induced DNA dama
232 tionally, the nucleolus disassembled and RNA Pol I activity declined after RNA Pol II inhibition.
236 2-subunit phosphorylated and inactivated RNA Pol I (polymerase I)-associated transcription factor TIF
238 nal arrest as evidenced by inactivity of RNA Pol I and II and the subsequent alteration in nuclear su
239 is accompanied by prolonged retention of RNA Pol I components at the promoter, resulting in longer pr
241 n between expression, hypomethylation of RNA Pol I promoters and chromatin decondensation was apparen
242 edly with the highly dynamic behavior of RNA Pol I transcription complexes in vivo, which undergo cyc
243 tion factor and that T. brucei relies on RNA Pol I for expressing the variant surface glycoprotein (V
244 results demonstrate that PTEN represses RNA Pol I transcription through a novel mechanism that invol
245 f PTEN in PTEN-deficient cells represses RNA Pol I transcription, while decreasing PTEN expression en
246 ur biochemical analyses demonstrate that RNA Pol I can transcribe through nucleosome templates and th
248 ith open chromatin, co-localize with the RNA Pol I transcription factor UBF1, and undergo transition
249 (rDNA) loci, where it interacts with the RNA Pol I transcription factor upstream binding factor (UBF)
250 Runx2 forms complexes containing the RNA Pol I transcription factors UBF1 and SL1, co-occupies th
252 te that despite its constrained active site, Pol I can catalyze DNA synthesis past N(6)-dA-linked pep
253 The reduced ability of beta159 to stimulate Pol I in vitro correlates with our finding that single-s
254 ead to deregulated signaling that stimulates Pol I transcription with resultant increases in ribosome
256 ng de novo DNA methylation fails to suppress Pol I or Pol II transcription in the absence of HDA6 act
260 protein, RNA polymerase II (Pol II), and the Pol I-associated transcription factor SL1 could be preci
261 ere is a biochemical interaction between the Pol I-associated heterodimer and Rrn3 and that this inte
263 vidence that HDV RNA synthesis occurs in the Pol I and Pol II transcription machineries, thus extendi
266 with different conformational states of the Pol I cleft, in addition to the stabilization of either
267 enow and Klentaq, the large fragments of the Pol I DNA polymerases from Escherichia coli and Thermus
273 of RRN9 encoding an essential subunit of the Pol I transcription factor, upstream activation factor,
274 n contrast to related DNA polymerases of the Pol I type, which fail to extend mismatches efficiently
275 of endogenous coilin partially overrides the Pol I transcriptional arrest caused by cisplatin, while
276 at Spt6 is involved in either recruiting the Pol I-Rrn3 complex to the rDNA or stabilizing the preini
280 in kinase CK2 co-immunoprecipitates with the Pol I complex and is associated with the rRNA gene promo
282 transcription, Mot1 also associates with the Pol I promoter in vitro in a reaction that depends on co
285 ed by RNA polymerase (Pol) II in addition to Pol I, but Pol II transcription is usually silenced.
287 However, hypoacetylated heterodimer binds to Pol I with greater affinity than acetylated heterodimer.
288 o date, AC40 and AC19 subunits are common to Pol I (a.k.a. Pol A) and Pol III (a.k.a. Pol C) and are
289 ic recruitment of CE to Pol II as opposed to Pol I and Pol III rests on the interaction between CE an
292 onship with histones on actively transcribed Pol I transcription units, providing insight into how Po
293 inating the expression of highly transcribed Pol I (UBTF1 activity) and Pol II genes (UBTF2 activity)
294 emonstrate that DDX21 widely associates with Pol I- and Pol II-transcribed genes and with diverse spe
298 at Pol IV does not functionally overlap with Pol I, II, or III and is nonessential for viability.
300 re we show that Rrn7, a subunit of the yeast Pol I core factor, and its human ortholog TAF1B are TFII
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