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1 Pol alpha is enriched at extending Okazaki fragments of
2 Pol beta also was able to perform intersegmental transfe
3 Pol delta, like bacterial replicases, undergoes collisio
4 Pol epsilon contains two flexibly tethered lobes.
5 Pol epsilon has greater contact with the nascent single-
6 Pol II elongation rates of 2.4-3.0 kb/min were observed,
7 Pol III inhibition affects gene reactivation status alon
8 Pol III regulation is thus sensitive to environmental cu
9 Pol IV transcription is considerably more error-prone th
12 ith the synthesis of one RNA molecule across Pol II genes, suggesting multiple rounds of pre-initiati
13 Binding of initiation factor Rrn3 activates Pol I, fostering recruitment to ribosomal DNA promoters.
14 erases alpha, delta, and epsilon (Pol alpha, Pol delta, and Pol epsilon), are responsible for eukaryo
15 three replicative DNA polymerases Pol alpha, Pol delta, and Pol epsilon; and canonical maturation of
18 Furthermore, while the loading of clamp and Pol IIIcore is highly organized, the exchange with the t
19 places the leading Pol epsilon below CMG and Pol alpha-primase at the top of CMG at the replication f
20 elta, and epsilon (Pol alpha, Pol delta, and Pol epsilon), are responsible for eukaryotic genome dupl
21 ve DNA polymerases Pol alpha, Pol delta, and Pol epsilon; and canonical maturation of Okazaki fragmen
23 ated by two DNA polymerases, Pol epsilon and Pol delta, that function on the leading and lagging stra
24 f viral DNA replication and that Pol eta and Pol kappa play an important role in HBoV1 DNA replicatio
25 regulate stage-specific gene expression and Pol II pausing will contribute to our continuous search
27 suggesting that transcription initiation and Pol II release are the key determinants of gene control
28 nal multisubunit RNA polymerases, Pol IV and Pol V, which synthesize noncoding RNAs that coordinate R
30 onents consisting of polymerases (Pol mu and Pol lambda), a nuclease (the Artemis.DNA-PKcs complex),
31 sh2-Msh3), Exo1, RPA, RFC-Delta1N, PCNA, and Pol epsilon was found to catalyze an MMR reaction that r
32 sh2-Msh3), Exo1, RPA, RFC-Delta1N, PCNA, and Pol epsilon was found to catalyze both short-patch and l
34 oximal pausing, while Pol II recruitment and Pol II pausing are not correlated among non-NL genes.
37 BV recruits cellular repair factors, such as Pol eta, to sites of viral DNA damage via BPLF1, thereby
40 found that Mediator, in addition to binding Pol II promoters, occupies chromosomal interacting domai
41 ereby Cdc45-Mcm2-7-GINS (CMG) helicase binds Pol epsilon and tethers it to the leading strand, and PC
43 h reduced catalytic efficiency and that both Pols exhibit a high propensity for inserting a wrong nt
46 span; in flies, longevity can be achieved by Pol III inhibition specifically in intestinal stem cells
47 we show that removal of the 5'-dRP block by Pol beta is unaffected by NCP constraints at all sites t
49 mechanisms of damage search and location by Pol beta are largely unknown, but are critical for under
51 we report the structure of the S. cerevisiae Pol II-Rad26 complex solved by cryo-electron microscopy.
56 e the consequences of increased or decreased Pol II catalysis on gene expression in Saccharomyces cer
58 hich causes defects in DNA polymerase delta (Pol delta) proofreading (pol3-01) and nucleotide selecti
59 nts of polymerase binding to CMG demonstrate Pol epsilon binds CMG with a Kd value of 12 nM, but Pol
60 t in this case, Runt prevents PESE-dependent Pol II recruitment and preinitiation complex (PIC) assem
61 ly, mNET-seq patterns specific for different Pol II CTD phosphorylation states reveal weak co-transcr
62 (Pol II) recruitment levels tend to display Pol II promoter-proximal pausing, while Pol II recruitme
64 compared the ability of three homologous DNA Pol X family members to perform a processive search for
66 enzymatic activities of the replicative DNA Pol III are well understood, its dynamics within the rep
67 ive searching ability observed among the DNA Pol X family members correlated with their proposed biol
69 s economy of design enables Rtt103 to engage Pol II at distinct sets of genes with differentially enr
70 oteins leads to strong depletion of enhancer Pol II occupancy and eRNA synthesis, concomitant with do
71 ases, polymerases alpha, delta, and epsilon (Pol alpha, Pol delta, and Pol epsilon), are responsible
72 rts a model in which DNA polymerase epsilon (Pol epsilon) carries out the bulk of leading strand DNA
75 nes, POLR1C and POLR1D, encode for essential Pol I/III subunits that form a heterodimer necessary for
77 DNA repair DNA polymerases (polymerase eta [Pol eta] and polymerase kappa [Pol kappa]) are recruited
78 tly of mRNA-capping activity in facilitating Pol II's engagement in transcriptional elongation, thus
79 Some promoters have a strong disposition for Pol II pausing and often mediate faster, more synchronou
80 phila melanogaster CTD that is essential for Pol II function in vivo and capitalize on natural sequen
81 restingly, CBP activity is rate limiting for Pol II recruitment to these highly paused promoters thro
82 bunits that form a heterodimer necessary for Pol I/III assembly, and many TCS mutations lie along the
83 on, similar to Pol II, suggesting a need for Pol V transcripts to faithfully reflect the DNA sequence
84 x on transcribed genes when RNA emerges from Pol II, and that loss of EF-RNA interactions upon RNA cl
85 production of infectious virus, and further, Pol eta was found to bind to EBV DNA, suggesting that it
87 ssing clade C(CN54) HIV-1 Env(gp120) and Gag-Pol-Nef antigens (NYVAC-C) showed limited immunogenicity
88 h Ad35/Ad26 vectors expressing SIVmac239 Gag/Pol/Env with or without an AS01B-adjuvanted SIVmac32H gp
92 e present the crystal structure of the human Pol B-subunit (p59) in complex with CTD of the catalytic
93 1C and POLR1D) involved in RNA polymerase I (Pol I) transcription account for more than 90% of diseas
94 the selective inhibitor of RNA polymerase I (Pol I) transcription, CX-5461, effectively treats aggres
95 ed a processive search assay to determine if Pol beta has evolved a mechanism for efficient DNA damag
96 Here we employ a set of RNA Polymerase II (Pol II) activity mutants to determine the consequences o
97 Phosphorylation of the RNA polymerase II (Pol II) C-terminal domain (CTD) regulates transcription
98 of Rpb1, a subunit of the RNA polymerase II (Pol II) complex, and therefore hampers global cellular t
99 al inhibitor studies that RNA polymerase II (Pol II) elongation is important for establishing memory
102 minal domain (CTD) of the RNA polymerase II (Pol II) large subunit cycles through phosphorylation sta
103 of the largest subunit of RNA polymerase II (Pol II) orchestrates dynamic recruitment of specific cel
107 tive NL genes with higher RNA polymerase II (Pol II) recruitment levels tend to display Pol II promot
108 at many steps, including RNA polymerase II (Pol II) recruitment, transcription initiation, promoter-
113 clusively associated with RNA polymerase II (Pol II)-transcribed genes, but is not an unambiguous mar
116 BocaSR is transcribed by RNA polymerase III (Pol III) from an intragenic promoter at levels similar t
119 and P587L substitutions functionally impair Pol gamma, with greater pathogenicity predicted for the
120 ults demonstrate that the [4Fe4S] cluster in Pol delta can act as a redox switch for activity, and we
121 to 1-10%) in the isogenic cells deficient in Pol kappa, Pol iota or Pol zeta, suggesting the mutual i
124 s of many of the amino acid substitutions in Pol delta resemble those of previously identified antimu
126 onal splicing and poly(A) signal-independent Pol II termination of lincRNAs as compared to pre-mRNAs.
127 Hyper-methylation of Pol III genes inhibits Pol III binding to DNA via inducing repressed chromatin
128 nds on the plant-specific RNA polymerase IV (Pol IV), and ARGONAUTE4 (AGO4) is a major het-siRNA effe
129 , and found a coactivator role of MTA1/c-Jun/Pol II coactivator complex upon the IGFBP3 transcription
131 lymerase eta [Pol eta] and polymerase kappa [Pol kappa]) are recruited to the viral DNA replication c
132 n the isogenic cells deficient in Pol kappa, Pol iota or Pol zeta, suggesting the mutual involvement
133 -tier ahead of the C-tier places the leading Pol epsilon below CMG and Pol alpha-primase at the top o
135 In contrast to model predictions, mutated Pol II retains normal sensitivity to altered nucleotide
136 zation of either Rrn7 N-terminal domain near Pol I wall or the tandem winged helix domain of A49 at a
137 with the intersegmental searching ability of Pol beta being at least 6- and approximately 2-fold high
138 ths, the intramolecular searching ability of Pol beta is at least 4-fold higher than that of Pol mu a
140 te, hydrogen peroxide causes accumulation of Pol II near promoters and enhancers that can best be exp
142 ion, PKL is required for the accumulation of Pol V-dependent transcripts and for the positioning of P
143 levels of dNTPs in vivo, and the activity of Pol epsilon is compromised more than lagging-strand poly
145 y; the growth-promoting anabolic activity of Pol III mediates the acceleration of ageing by TORC1.
147 deprivation, cells induce rapid clearance of Pol I-Rrn3 complexes, followed by the assembly of inacti
148 ures of pre- and post-catalytic complexes of Pol mu with a ribonucleotide bound at the active site.
151 functional fusion of the endogenous copy of Pol IV to the photoactivatable fluorescent protein PAmCh
153 mutations affecting the polymerase domain of Pol epsilon trigger ATR-dependent signaling leading to S
154 ila CBP inhibition results in "dribbling" of Pol II from the pause site to positions further downstre
155 disassembly before productive elongation of Pol II is achieved at most genes in the yeast genome.
156 1 and consequently reduces the engagement of Pol II in transcriptional elongation, leading to promote
157 ranscription that enhances the engagement of Pol II into transcriptional elongation) to the coding se
158 se data suggest that the repair footprint of Pol beta mainly resides within accessible regions of the
159 nd V clearly evolved as specialized forms of Pol II, but their catalytic properties remain undefined.
160 Intriguingly, a significant fraction of Pol III transcription from non-coding regions is not sub
161 ent apoptotic cell death), the inhibition of Pol I transcription also demonstrates potent efficacy in
162 Most strikingly, the acute inhibition of Pol I transcription reduces both the leukemic granulocyt
164 Surprisingly, we find that the mechanism of Pol IV recruitment is dependent on the type of DNA lesio
165 ylation profiles and molecular mechanisms of Pol III regulation that have not been as extensively stu
167 Pase domain promotes the forward movement of Pol II, and elucidate key roles for Rad26 in both TCR an
168 P-seq allowed transcriptional orientation of Pol II to be determined, which may be useful near promot
169 ssays following electrochemical oxidation of Pol delta reveal a significant slowing of DNA synthesis
171 ndent transcripts and for the positioning of Pol V-stabilized nucleosomes at several tested loci, ind
175 BPLF1 promotes a nuclear relocalization of Pol eta molecules which are focus-like in appearance, co
177 1-dependent response to feeding, the rise of Pol III occupancy before the onset of the night reflects
178 er, our results demonstrate that the role of Pol epsilon in replicative stress sensing is conserved i
179 f protein-coding genes has left the roles of Pol III in organismal physiology relatively unexplored.
181 beta is at least 4-fold higher than that of Pol mu and approximately 2-fold higher than that of Pol
185 mote the transition from a closed to an open Pol III pre-initiation complex, a process dependent on t
186 ic cells deficient in Pol kappa, Pol iota or Pol zeta, suggesting the mutual involvement of multiple
189 of UBF, Ser388 phosphorylated UBF, and other Pol I-related components (POLR1E, TAF1A, and TAF1C) rema
190 tuated within the middle of the BER pathway, Pol beta must efficiently locate its substrates before d
191 anscription factors, PcG proteins and paused Pol II states, these data identify a two-step mechanism
192 ption pausing factor M1BP, containing paused Pol II and enriched with promoter-proximal Polycomb Grou
193 ong support for the residence time of paused Pol II elongation complexes being much shorter than esti
196 d enhancers attenuates the release of paused Pol II on PAF1 target genes without major interference i
197 P and GAGA factor have high levels of paused Pol II, a unique chromatin signature, and are highly exp
198 uction in PcG binding, the release of paused Pol II, increases in promoter H3K4me3 histone marks and
199 of RNA polymerase II at the promoter (paused Pol II) has emerged as a widespread and conserved mechan
203 es include four members: Polalpha, Poldelta, Pol, and Polzeta, which share common architectural featu
204 ge of the E. coli replicative DNA polymerase Pol IIIcore with the translesion polymerases Pol II and
210 own of the nuclear-encoded mtDNA polymerase (Pol gamma-alpha), Tamas, produces a more complete block
212 ting their capacity to stall RNA polymerase (Pol) II and trigger transcription-coupled nucleotide exc
214 arboxy-terminal domain (CTD) RNA polymerase (Pol) II formation on the promoters of IRF1, IRF7, and RI
215 ion of gene transcription by RNA polymerase (Pol) III requires the activity of TFIIIB, a complex form
217 nds by the three replicative DNA polymerases Pol alpha, Pol delta, and Pol epsilon; and canonical mat
219 ymatic components consisting of polymerases (Pol mu and Pol lambda), a nuclease (the Artemis.DNA-PKcs
221 primarily replicated by two DNA polymerases, Pol epsilon and Pol delta, that function on the leading
222 two additional multisubunit RNA polymerases, Pol IV and Pol V, which synthesize noncoding RNAs that c
224 h the Pol alpha N-terminal domain, promoting Pol alpha and delta binding to stalled replication forks
225 upon completing replication, and we propose Pol delta-PCNA collides with the slower CMG, and in the
226 transcription initiation, promoter-proximal Pol II pause release, and transcription termination; how
230 rapamycin kinase complex 1 (TORC1) regulates Pol III activity, and is also an important determinant o
235 f DNA alkylation impair transcription by RNA Pol II in cells and with the isolated enzyme and unravel
236 ndently regulates CDK9/phospho-Ser 2 CTD RNA Pol II recruitment to the IRF3-dependent IFN-stimulated
238 2-subunit phosphorylated and inactivated RNA Pol I (polymerase I)-associated transcription factor TIF
239 is a higher level of CTD Ser2P modified RNA Pol II near CTCF peaks relative to the Ser5P form in the
240 iption by facilitating the elongation of RNA Pol II and preventing silenced chromatin on the viral ge
241 Ankrd26 promoter and loss of binding of RNA Pol II at the Ankrd26 Transcription Start Site (TSS).
243 he isolated enzyme and unravel a mode of RNA Pol II stalling that is due to alkylation of DNA in the
244 Here we tested the contributions of the RNA Pol II pre-initiation complex (PIC), mediator and cohesi
246 ter gene are increased in both fast and slow Pol II mutant strains and the magnitude of half-life cha
248 wer CMG, and in the absence of a stabilizing Pol delta-CMG interaction, the collision release process
250 iption is considerably more error-prone than Pols II or V, which may be tolerable in its synthesis of
251 in centers of viral DNA replication and that Pol eta and Pol kappa play an important role in HBoV1 DN
252 r establishing memory in this model but that Pol II itself is not retained as part of the memory mech
259 into nucleosome core particles revealed that Pol beta is not processive in the context of a nucleosom
269 s 24 proteins, forming the CMG helicase, the Pol epsilon DNA polymerase, the RFC clamp loader, the PC
271 matin association of many EFs, including the Pol II serine 2 kinases Ctk1 and Bur1 and the histone H3
272 with different conformational states of the Pol I cleft, in addition to the stabilization of either
275 Here, we test the accepted view that the Pol III holoenzyme remains stably associated within the
276 labeled polymerases to demonstrate that the Pol III* complex (holoenzyme lacking the beta2 sliding c
277 h fluorescence microscopy, we found that the Pol III* subassembly frequently disengages from the repl
279 n of the three states in this study with the Pol II system suggests that a ratchet motion of the Core
281 zed the roles of translesion synthesis (TLS) Pols in the replication of 3-MeA-damaged DNA in human ce
283 transcription, with M1BP binding leading to Pol II recruitment followed by AbdA targeting, which res
284 o chromatin regions that are in proximity to Pol II and are highly associated with transcripts abunda
285 bits high fidelity transcription, similar to Pol II, suggesting a need for Pol V transcripts to faith
289 ivate gene transcription, themselves undergo Pol II-mediated transcription, but our understanding of
292 GED METHYLASE 2 (DRM2) and RNA polymerase V (Pol V), two main actors of RNA-directed DNA methylation,
295 cesses, including base excision repair where Pol beta catalyzes two key enzymatic steps: 5'-dRP lyase
297 play Pol II promoter-proximal pausing, while Pol II recruitment and Pol II pausing are not correlated
300 trimeric HIV-1 gp140 protein or a Gag(ZM96)-Pol-Nef(CN54) polyprotein as Gag-derived virus-like part
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