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1 RIF binding was monitored using absorbance at 525 nm to
2 RIF-1 belongs to the small and poorly explored class of
3 RIF-1 has extraordinary potency (femtomolar, or 10(-15)
4 RIFs are characterized by the local recruitment of DNA d
5 molecule, dubbed rosette-inducing factor 1 (RIF-1), produced by the Gram-negative Bacteroidetes bact
7 urprisingly much smaller at higher doses: 15 RIF/Gy after 2 Gy exposure compared to approximately 64
11 ion/resolution rates, we observe an absolute RIF yield that is surprisingly much smaller at higher do
12 together with RIF (period 1), 4 weeks after RIF discontinuation (period 2), and after the RAL dose r
16 strated drug-drug interaction between FA and RIF, which lowered FA levels to a degree that could infl
17 erial subpopulations are similar for INH and RIF treatment: mostly intracellular with extracellular b
18 suppression in patients on EFV (600 mg) and RIF-based tuberculosis treatment in the multicenter rand
21 ve (including rifampin [RIF] susceptible and RIF resistant), and nontuberculosis mycobacterial materi
22 itivity for detection of M. tuberculosis and RIF resistance, including in AFB-negative sputum, and ha
24 are of immediate public health importance as RIF+ABZ are registered drugs and thus immediately implem
26 chip that permits visible detection of both RIF-sensitive and RIF-resistant strains of M. tuberculos
27 ChIP) assays revealed that PXR activation by RIF disrupted enhancer-promoter communication and prompt
28 sis of interactions of RMP with three common RIF(R) mutant RNAPs suggests that modifications to RMP m
29 Interference with these fluid lipid domains (RIFs) perturbs overall lipid homeostasis and affects mem
30 ly small decreases in AUC0-12 and C12 during RIF coadministration, warranting further evaluation in p
32 ), which is found upstream of genes encoding RIF-inactivating enzymes from a diverse collection of ac
35 label randomized study, we evaluated oral FA/RIF vs standard-of-care (SOC) intravenous antibiotics fo
38 Here we show that a rosette inducing factor (RIF-1) produced by A. machipongonensis belongs to the sm
39 ating sulfonolipid rosette-inducing factors (RIFs) to recapitulate the full bioactivity of live Algor
44 he average number of radiation-induced foci (RIF) per cell increased over the first 3 h after radionu
45 ibility) for first-line agents was 95.0% for RIF (132/139), 98.2% for INH (111/113), and 98.6% for EM
48 7.1%/97.1%, 98.2%/97.8%, and 96.5%/97.5% for RIF and 94.4%/96.4%, 95.4%/98.8%, and 94.9%/97.6% for IN
49 0.3%/98.5%, 90.3%/98.5%, and 92.0%/98.5% for RIF resistance detection and 89.1%/99.4%, 89.1%/99.4%, a
50 V2 and Nipro to Hain V1 was demonstrated for RIF and INH resistance detection in isolates and sputum
51 The double dose of RAL overcompensated for RIF induction, but the standard dose was associated with
54 positive and negative predictive values for RIF, INH, and EMB combined were 84.9% and 98.3%, respect
56 ates that this retrieval-induced forgetting (RIF) phenomenon reflects inhibitory mechanisms called in
61 RPH orthologs are widespread and found in RIF-sensitive bacteria, including Bacillus cereus and th
63 nregulated and upregulated, respectively, in RIF-treated ShP51 cells, and these regulations were conf
64 e further showed that addition of MTZ to INH/RIF effectively treated animals with active TB within 2
66 similar sensitivity to laboratory-based MTB/RIF (292 [83%] of 351; p=0.99) but higher specificity (9
68 34 (5%) of 744 tests with point-of-care MTB/RIF and 82 (6%) of 1411 with laboratory-based MTB/RIF fa
71 replacing microscopy with the GeneXpert MTB/RIF (Xpert) nucleic acid amplification assay could reduc
73 with tuberculosis through the GeneXpert MTB/RIF assay to identify patients with multidrug-resistant
75 ed the reporter phage assay to GeneXpert MTB/RIF for detection of M. tuberculosis and rifampin (RIF)
76 city were compared to those of GeneXpert MTB/RIF with an M. tuberculosis culture as the reference sta
78 ty (TTP; a surrogate of bacterial load), MTB/RIF TB-specific and internal positive control (IPC)-spec
80 ssociated with a decreased likelihood of MTB/RIF-positivity in pulmonary specimens but an increased l
82 We assessed the utility of Xpert((R)) MTB/RIF (GeneXpert) as a screening tool for medical admissio
83 nd NaCl, and the cycle thresholds of the MTB/RIF assay were compared between treated and untreated sa
84 o reduced dropout (15 [8%] of 185 in the MTB/RIF group did not receive treatment vs 28 [15%] of 182 i
85 e microscopy group, more patients in the MTB/RIF group had a same-day diagnosis (178 [24%] of 744 vs
86 56 were similar (320 [43%] of 744 in the MTB/RIF group vs 317 [42%] of 758 in the microscopy group; p
87 y, more culture-positive patients in the MTB/RIF group were on treatment due to reduced dropout (15 [
88 ar microscopy group vs 2 [0.25-3] in the MTB/RIF group; p=0.85) or 6 months (1 [0-3] vs 1 [0-3]; p=0.
90 cterial culture, smear microscopy, Xpert MTB/RIF (Cepheid Inc.), tuberculin skin test (TST), and ches
92 pulmonary tuberculosis (PTB) using Xpert MTB/RIF (Mycobacterium tuberculosis/rifampicin) automated te
98 he rollout of one such diagnostic, Xpert MTB/RIF (Xpert) is being considered, but if Xpert is used ma
99 ompared the diagnostic accuracy of Xpert MTB/RIF (Xpert) with microscopy for detection of pulmonary t
102 M, ELISA a sensitivity of 43%, and Xpert MTB/RIF a sensitivity of 100% and specificities of 87%, 91%,
103 M, ELISA a sensitivity of 38%, and Xpert MTB/RIF a sensitivity of 86% and specificities of 70%, 91%,
104 effects of different algorithms of Xpert MTB/RIF and light-emitting diode (LED) fluorescence microsco
105 fampicin susceptibility results of Xpert MTB/RIF and mycobacteria growth indicator tube (MGIT) were c
107 microscopy has been replaced with Xpert MTB/RIF as the initial diagnostic test for tuberculosis.
109 a M. tuberculosis assay, the Gene Xpert MTB/RIF assay (Cepheid, Sunnyvale, CA), and a line probe ass
110 ests for tuberculosis, such as the Xpert MTB/RIF assay (Cepheid, Sunnyvale, CA, USA), are being imple
111 lification testing (NAAT) with the Xpert MTB/RIF assay (Xpert) may be more efficient and less costly.
113 ecificity precludes the use of the Xpert MTB/RIF assay as a biomarker for monitoring tuberculosis tre
114 sitivity and specificity of of the Xpert MTB/RIF assay compared with microscopy in the diagnosis of p
117 ith that of sputum culture and the Xpert MTB/RIF assay for all patients and subgroups of patients str
119 comparison, the sensitivity of the Xpert MTB/RIF assay for molecular detection of M. tuberculosis DNA
121 re examined by smear, culture, and Xpert MTB/RIF assay for the presence of M. tuberculosis and blood
122 sults as a reference standard, the Xpert MTB/RIF assay had high sensitivity (97.0%, 95% CI 95.8-97.9)
123 y assessed the practicality of the Xpert MTB/RIF assay in a real-life setting with high prevalence of
126 Analyses of GLA samples with the Xpert MTB/RIF assay is a sensitive and specific method for rapid d
129 l quality assessment (EQA) for the Xpert MTB/RIF assay is part of the quality system required for cli
130 Although the development of the Xpert MTB/RIF assay is undoubtedly a landmark event, clinical and
132 at the quantitative outputs of the Xpert MTB/RIF assay may be useful as a dynamic measure of TB treat
133 sceptibility (MODS) culture or the Xpert MTB/RIF assay might be used to expand bacteriological diagno
137 y and very high specificity of the Xpert MTB/RIF assay supports its inclusion in the reference standa
138 y of the Gene drive to that of the Xpert MTB/RIF assay using M. tuberculosiscultures as the reference
141 sensitivity and specificity of the Xpert MTB/RIF assay were similar: sensitivity was 68.8% (95% CI 53
142 sensitivity and specificity of the Xpert MTB/RIF assay with GLA samples for the detection of pulmonar
143 fluorescence smear microscopy, the Xpert MTB/RIF assay, mycobacterial growth indicator tube (MGIT) cu
150 culture (gold-standard test), and Xpert MTB/RIF assays (Cepheid, Sunnyvale, CA, USA) and urine sampl
154 antitative M tuberculosis DNA with Xpert MTB/RIF correlated with smear grades (rho=-0.74; p<0.0001),
155 combining same-day microscopy and Xpert MTB/RIF could reduce annual TB mortality by 44% relative to
160 Among TB culture-positive cases, Xpert MTB/RIF had 100% and 81% sensitivity in sputum smear-positiv
162 We aimed to assess the impact of Xpert MTB/RIF implementation on the delay to treatment initiation
163 d immunosorbent assay (ELISA), and Xpert MTB/RIF in cerebrospinal fluid (CSF) in an autopsy cohort of
164 y and positive predictive value of Xpert MTB/RIF in culture-negative but clinically diagnosed PTB was
166 Five cases were false-positive by Xpert MTB/RIF in patients with nontuberculous mycobacteria, old PT
170 ment, population-level scale-up of Xpert MTB/RIF or microcolony-based culture often averted 10 times
174 tality following implementation of Xpert MTB/RIF possibly because of insufficient powering, differenc
182 randomized to two strategies: (1) Xpert MTB/RIF test (Cepheid, Sunnyvale, CA) performed at a distric
184 ict hospital laboratory or (2) POC Xpert MTB/RIF test performed at a primary health care clinic.
185 rmat extends the capability of the Xpert MTB/RIF test, enabling up to 20 ml of blood to be tested rap
186 ially with the introduction of the Xpert MTB/RIF test, used for tuberculosis (TB) diagnosis for all p
188 aims to introduce EQA concepts for Xpert MTB/RIF testing and evaluates five potential EQA panels.
189 d clinical effect of point-of-care Xpert MTB/RIF testing at primary-care health-care facilities in so
190 ommendation results in unnecessary Xpert MTB/RIF testing in many individuals living in tuberculosis-e
192 two years of same-day microscopy, Xpert MTB/RIF testing, and the combination of both approaches.
198 The sensitivity of MGIT, MODS and Xpert MTB/RIF was 88%, 71% and 76%, respectively, among all 104 tr
199 reduction in positivity rates with Xpert MTB/RIF were slower than those with the standard methods.
200 We prospectively compared MODS and Xpert MTB/RIF with standard microscopy and culture using the BD MG
202 with positive specimens tested by Xpert MTB/RIF) and (2) TBDx alone-against the gold standard liquid
203 ecting smear-negative cases (e.g., Xpert MTB/RIF) further improves the incremental benefit of these d
204 es (i.e., same-day microscopy plus Xpert MTB/RIF) generated synergistic effects: an 18.7% reduction i
207 sis in South Africa were tested by Xpert MTB/RIF, concentrated smear microscopy, and liquid culture t
208 diagnostic test for tuberculosis, Xpert MTB/RIF, received a conditional programmatic recommendation
210 rt, by the success and roll out of Xpert MTB/RIF, there is now considerable interest in new technolog
218 system), and 174 (84%) of 207 with Xpert MTB/RIF; at 26 weeks, positive results were obtained for ten
228 hia depletion following 7-day combination of RIF+ABZ also led to accelerated macrofilaricidal activit
231 sed live imaging and mathematical fitting of RIF kinetics to show that RIF induction rate increases w
236 logs defined the absolute stereochemistry of RIF-1 and revealed a remarkably restrictive set of struc
242 odeficiency virus (HIV)-infected patients on RIF-based antitubercular therapy in the French National
249 Increased occurrence of Rifamycin-resistant (RIF(R) ) TB, approximately 41% of which results from the
251 gnane X receptor (PXR) activator rifampicin (RIF), human hepatocellular carcinoma HepG2-derived ShP51
252 tocytes to the human PXR agonist rifampicin (RIF) on expression of target genes involved in phase I (
253 bacterium tuberculosis (MTB) and rifampicin (RIF) resistance, was endorsed by WHO in December, 2010.
254 ls with a combination of INH and rifampicin (RIF) was highly effective at preventing reactivation dis
255 f the natural product antibiotic rifampicin (RIF) to 2'-N-hydroxy-4-oxo-rifampicin, a metabolite with
256 ave developed a tissue model for rifampicin (RIF), an antibiotic used to treat tuberculosis, and have
257 ighly sensitive determination of rifampicin (RIF) by square wave adsorptive stripping voltammetry.
258 t synergized with minocycline or rifampicin (RIF) to deplete symbionts, block embryogenesis, and stop
262 DST (true resistance) was 100% for rifampin (RIF) (14/14), 90.0% for isoniazid (INH) (36/40), 70% for
263 reptomycin (STR), isoniazid (INH), rifampin (RIF), ethambutol (EMB) (collectively known as SIRE), and
264 testing (DST) to isoniazid (INH), rifampin (RIF), moxifloxacin (MOX), ofloxacin (OFX), amikacin (AMK
265 d 9-month isoniazid (INH), 4-month rifampin (RIF), weekly rifapentine/isoniazid (RPT/INH) for 12 week
267 administration of combinations of rifampin (RIF), isoniazid [isonicotinylhydrazine (INH)], pyrazinam
268 ly conserved regulatory motif, the rifampin (RIF) -associated element (RAE), which is found upstream
269 oB) gene that confer resistance to rifampin (RIF), the treatment of choice for tuberculosis (TB).
273 negative, MTBC-positive (including rifampin [RIF] susceptible and RIF resistant), and nontuberculosis
276 ociated expression signature also stratifies RIF patients into distinct groups with different subsequ
277 Rosette-induction assays using synthetic RIF-1 stereoisomers and naturally occurring analogs defi
279 matical fitting of RIF kinetics to show that RIF induction rate increases with increasing radiation d
280 tion of the expression changes suggests that RIF is primarily associated with reduced cellular prolif
285 e S531L mutant exhibits a disordering of the RIF binding interface, which effectively reduces the RMP
286 , certainly the electrostatic surface of the RIF binding pocket is dramatically changed, likely resul
287 ing parameters, including RF, DC bias of the RIF electrodes, and electric fields for effectively inte
288 In contrast, the H526Y mutation reshapes the RIF binding pocket, generating significant steric confli
291 applied for the determination of ultra-trace RIF amounts in biological and pharmaceutical samples wit
293 NADPH efficiently reduces the FAD only when RIF is present, implying that RIF binds before NADPH in
296 resolution structure of RIFMO complexed with RIF represents the precatalytic conformation that occurs
298 weeks after initiation of RAL together with RIF (period 1), 4 weeks after RIF discontinuation (perio
300 mouse model, we found that co-treatment with RIF and INH causes accumulation of the endogenous hepato
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