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1 RIP and esophageal manometry can objectively identify su
2 RIP is conserved from bacteria to humans and governs man
3 RIP is not recruited to this complex in Sam68 knockout c
4 RIP limits radiation dosage, interrupts treatment, and l
5 RIP-B7.1 mice homozygous for targeted disruption of TLR9
6 RIP-B7.1 transgenic mice express B7.1 costimulatory mole
7 RIP-Chip studies (and parallel assessments of total inpu
8 RIP-LCMV islets express CXCL10 after isolation and maint
10 underwent deletions rendering either type 1 RIPs (like those from Cucurbitaceae, Rosaceae and Iridac
11 related with the actual Euphorbiaceae type 1 RIPs fused with a double beta trefoil lectin gene simila
12 nces revealed that the most primitive type 1 RIPs were similar to that of the actual monocots (Poacea
14 is a type of receptor-interacting protein-1 (RIP-1)-dependent programmed necrosis called necroptosis,
16 hich nucleates RAD-51-ssDNA filaments, RFS-1/RIP-1 binds and remodels pre-synaptic filaments to a sta
17 stopped-flow experiments, we show that RFS-1/RIP-1 confers this dramatic stabilization by capping the
19 a heterodimeric Rad51 paralog complex, RFS-1/RIP-1, and uncovered the molecular basis by which Rad51
20 RAD51 paralog complex from C. elegans, RFS-1/RIP-1, functions predominantly downstream of filament as
22 Cucurbitaceae lectins to generate the type 2 RIPs and finally this gene underwent deletions rendering
26 sisting of single-chain proteins, and type 2 RIPs, consisting of an A chain with RIP properties coval
28 ngle antigen-mismatched mouse model (C57BL/6 RIP-GP in C57BL/6) was used to evaluate the antigen-spec
30 ctly activates programmed necrosis through a RIP homotypic interaction motif-dependent association of
31 upon RIP-specific Cre recombination using a RIP-Cre line first described by Herrera (RIP(HER)-Cre).
32 Additionally, pharmacologic treatment with a RIP kinase inhibitor attenuated histological and functio
42 ecipitation followed by microarray analysis (RIP-chip) to recover and identify the endogenous RNA tar
43 ecipitation followed by microarray analysis (RIP-chip) was used to identify mRNA species preferential
46 can be applied on all variations of CLIP and RIP-seq technologies, (ii) it accurately models the unde
47 inking with immunoprecipitation- (CLIP-) and RIP-seq] for probing their activities have advanced rapi
49 erage and vessel perfusion both in mPDAC and RIP-Tag2 tumors, in parallel to an inhibition of tumor h
50 approach involving expression profiling and RIP-Chip analysis, we have identified a cohort of transl
51 pitation)-seq datasets for 60 human RBPs and RIP-ChIP (RNP immunoprecipitation-microarray) data for 6
52 and RNA modification sites from CLIP-seq and RIP-seq data, and reveals the significant contribution o
53 hed fractions were digested with trypsin and RIP-II peptides were identified based on accurate mass L
54 of A. suum: these include the paired URX and RIP neurons, two pairs of lateral ganglion neurons in th
55 onstrate that, using a single protocol, APEX-RIP can isolate RNAs from a variety of subcellular compa
57 Here, we develop such a method, termed APEX-RIP, which combines peroxidase-catalyzed, spatially rest
58 ray analyses and downstream bioinformatics, 'RIP-Chip' experiments enable direct analyses of miRNA ta
59 st responsive mRNA target candidates in both RIP competition assays and expression profiling experime
60 by inspiratory flow limitation (measured by RIP and esophageal manometry) and classified as subglott
61 as Howardula rRNA in vitro at the canonical RIP target site within the alpha-sarcin/ricin loop (SRL)
62 eral high-throughput technologies (PAR-CLIP, RIP-chip, 4sU-tagging, and SILAC) provides strong eviden
63 rgeting technologies, specifically PAR-CLIP, RIP-chip, and whole-transcript expression profiling.
68 ing the formation of 2 cell death complexes, RIP 1 (receptor-interacting protein 1)-FADD (Fas-associa
70 own-regulation was associated with decreased RIP II activity and increased SRF phosphorylation on ser
71 slets from either normal or CXCL10-deficient RIP-LCMV mice and transferred them under the kidney caps
78 e employed a rat insulin II promoter-driven (RIP-driven) Cre recombinase to disrupt the GH receptor i
79 comprehensive information than using either RIP-Chip or total mRNA profiling alone after miRNA trans
82 tein/multiple organellar RNA editing factor (RIP/MORF) boxes, which are required for ORRM1 to interac
83 l, which protects against both TNF-alpha/Fas-RIP-1-dependent necroptosis and TNF-alpha/Fas-independen
84 erties render a given substrate amenable for RIP, and how the lipid environment affects the substrate
85 nto lead identification and optimization for RIP antidote development to minimize the global health t
86 that the mechanism of repeat recognition for RIP involves direct interactions between homologous doub
89 icantly up-regulated in isolated islets from RIP.B7-H4 compared with wild-type B6 mice (56%+/-23% vs.
90 lly, mice lacking synaptic GABA release from RIP-Cre neurons have reduced energy expenditure, become
92 e, selective activation of arcuate GABAergic RIP-Cre neurons, which monosynaptically innervate PVH ne
98 he analyses support four major findings: (i) RIP-Chip studies correlated with total input mRNA profil
99 SRF bound to the rat insulin promoter II (RIP II) serum response element, an element conserved in
100 tification have used co-immunoprecipitation (RIP-Chip and others) and transfection-based experimental
101 using ribonucleoprotein immunoprecipitation (RIP) analysis, we discovered a novel function for MYF5 a
104 Here, we utilized RNA immunoprecipitation (RIP) combined with competitive binding assays to identif
106 tion into myotubes, RNP immunoprecipitation (RIP) analysis indicated that AUF1 binds prominently to M
107 quencing data from RNA immunoprecipitations (RIPs) and report that mRNAs associated with the cell cyc
108 cyclophosphamide and reduced tumor burden in RIP-Tag2 mice, without evidence of tumor cell sensitizat
109 ted cross priming of diabetogenic T cells in RIP-mOVA mice, a situation phenocopied in wild-type RIP-
113 fferentiation by inducing 2-fold increase in RIP(+) cells (p<0.01) while the presence of miRs further
114 pancreatic neuroendocrine tumors (PNETs) in RIP-Tag2 mice and cervical carcinomas in HPV16/E2 mice.
115 ndicate that inhibition of VEGF signaling in RIP-Tag2 mice upregulates c-Met expression in lymphatic
118 or near pancreatic neuroendocrine tumors in RIP-Tag2 transgenic mice and whether lymph node metastas
119 findings outline a mechanism of IFN-induced RIP kinase-dependent necrotic cell death and identify FA
122 OPNs) within the nucleus raphe interpositus (RIP) help gate the transition between fixation and sacca
123 ns labeled retrogradely from injections into RIP had numerous anterogradely labeled terminals closely
125 ipitation (IP)-based methods such as RNA IP (RIP) and crosslinking and IP (CLIP) are key starting poi
126 nt to suppress TNF-induced necrosis, and its RIP homotypic interaction motif (RHIM) domain was requir
128 nd receptor-interacting protein (RIP) kinase RIP 3 (RIPK3) driving extrinsic apoptosis and necroptosi
129 interacting serine/threonine-protein kinase (RIP) 1/3 were observed in the cells transfected with the
131 Because receptor-interacting protein kinase (RIP) 3-mediated necroptosis, a nonapoptotic cell death p
132 interacting serine/threonine-protein kinase (RIP)-3-mediated intestinal necroptosis was linked to inc
133 tion of receptor-interacting protein kinase (RIP)1 by necrostatin 1 partially inhibited TNF-alpha/ZVA
134 ated by receptor interacting protein kinase (RIP)3 (also called RIPK3) has emerged as an alternate de
137 kinase (RIP) 3 (also called RIPK3) mediates RIP homotypic interaction motif (RHIM)-dependent program
139 immunoprecipitation followed by microarray (RIP-chip) analysis showed that DHTS treatment of HeLa ce
140 rosynteny analyses, indicating that mosquito RIP genes derived from a single Horizontal Gene Transfer
141 induced receptor activation, but unlike most RIP target proteins, it requires endocytosis and does no
142 affinity-purified Puf3-TAP associated mRNAs (RIP-seq) identified mRNAs encoding mitochondrially-targe
143 ospora crassa repeat-induced point mutation (RIP) as a model system, we show that a pair of DNA segme
145 profile of a repeat-induced point mutation (RIP) process distinctly different from what has been obs
146 nisms, namely repeat-induced point mutation (RIP), DNA methylation and small RNA-mediated gene silenc
147 Collectively, our study identifies a novel RIP in an insect defensive symbiont and suggests an unde
150 f the alpha-helical substrate in the case of RIP may be associated with a hinge motion triggered by t
151 In this study, we employ a combination of RIP-seq and short- and long-wave individual-nucleotide r
152 event apoptosis together with competitors of RIP homotypic interaction motif (RHIM)-dependent signal
155 ted for the first time in silico evidence of RIP encoding genes in metazoans, in two closely related
156 ines are likely not the dominant inducers of RIP kinase-driven embryonic lethality in FADD-deficient
157 to apoptosis, and simultaneous inhibition of RIP kinases and caspases is essential for effective neur
159 -encoded RHIM competitor, viral inhibitor of RIP activation, sustains viability of human cells like i
162 pected cell death-independent requirement of RIP kinase activity in coordinating neuroinflammation, r
163 s work we have carried out a broad search of RIP sequence data banks from angiosperms in order to stu
165 ative method for more effective treatment of RIP and promises to improve quality of life of cancer pa
170 d pro-NGF do not induce homerdimerization or RIP, homodimers of p75(NTR) are gamma-secretase substrat
171 pitation followed by sequencing (CLIP-seq or RIP-seq) allows transcriptome-wide discovery of RNA regu
172 ein should be applicable to studies of other RIP events and amenable to developing in vitro assays fo
174 the RPM-1.FSN-1 complex inhibitory peptide (RIP), yields similar phenotypes and enhancer effects to
175 ated respiratory inductance plethysmography (RIP) and esophageal manometry to identify clinically sig
176 man retrotransposon insertion polymorphisms (RIPs), yielding an unprecedented catalog of common and r
177 nd that the nature of reactant ion positive (RIP) is dependent on the discharge/carrier gas compositi
180 3-dihydroquinazolin-4(1H)-one as a promising RIP inhibitor and for chemical characterization of drug
182 enic mouse model using rat insulin promoter (RIP)-driven Cre-loxP recombination system to specificall
183 cence imaging (BLI) of rat insulin promoter (RIP)-driven luciferase was used to monitor the fate of t
185 (OVA(323-339)) in the rat insulin promoter (RIP)-mOVA self-antigen model for their ability to trigge
188 ell-specific promoter (rat insulin promoter [RIP]) stimulates proliferation of both alpha and beta ce
189 mericana is a ribosome-inactivating protein (RIP) and an RNA N-glycosidase that removes specific puri
190 sma encodes a ribosome-inactivating protein (RIP) related to Shiga-like toxins from enterohemorrhagic
193 LR9 results in receptor interacting protein (RIP) 3 kinase-dependent programmed necrosis that occurs
195 the RNA-editing factor interacting protein (RIP) family and Organelle RNA Recognition Motif-containi
196 psis RNA-editing factor interacting protein (RIP) family and ORRM1 (Organelle RNA Recognition Motif-c
197 the RNA-editing factor interacting protein (RIP) family in Arabidopsis have recently been shown to b
198 ) that contain receptor-interacting protein (RIP) homotypic interaction motifs (RHIM) play a key role
199 this involves receptor-interacting protein (RIP) kinase 1/3, this study aimed to establish the role
200 , we show that receptor-interacting protein (RIP) kinase mediates necrotic cone cell death in rd10 mi
201 caspase-8 and receptor-interacting protein (RIP) kinase RIP 3 (RIPK3) driving extrinsic apoptosis an
202 evidence for a receptor-interacting protein (RIP) kinase-caspase-8-dependent macrophage apoptotic dea
203 e execution of receptor-interacting protein (RIP) kinase-dependent necroptosis, is upregulated and ac
206 is known that receptor interacting protein (RIP) kinases, RIP1 and RIP3, are key effectors of TNF-in
207 assembles with receptor-interacting protein (RIP)-2 kinase in response to the presence of bacterial m
209 the necrosome, receptor-interacting protein (RIP)1 and RIP3, are highly expressed in PDA and are furt
210 ce precipitous receptor-interacting protein (RIP)1/RIP3 kinase-mediated necrosis when the adaptor pro
212 ctive SREBP transmembrane precursor protein, RIP of the anchor intermediate by site-2 protease genera
215 f the type 2 ribosome-inactivating proteins (RIPs) family (e.g. ricin, abrin) are potent cytotoxins s
217 nd ricin are ribosome-inactivating proteins (RIPs) that are lethal to mammals and pose a global healt
219 cess of regulated intramembrane proteolysis (RIP) and has a significant impact on receptor function.
221 dergoes regulated intramembrane proteolysis (RIP) during late stationary phase in response to nutrien
222 cently, regulated intramembrane proteolysis (RIP) has been recognized as a mechanism whereby proteoly
227 ning in regulated intramembrane proteolysis (RIP) of OASIS, ATF6 and SREBP transcription factors, con
231 In this study, we used the prototypical RIP-Tag model of multistage pancreatic islet tumorigenes
234 ive RIPs evolved to the dicot type 1 related RIPs (like those from Caryophyllales, Lamiales and Eupho
237 pplied it to a wide range of public CLIP-seq/RIP-seq datasets involving numerous splicing factors, mi
239 oprotein immunoprecipitation and sequencing (RIP-seq) analyses of HuR in oral cancer cells treated wi
240 immunoprecipitation followed by sequencing (RIP-seq), RNA sequencing (RNA-seq), and gene expression
241 tion followed by next-generation sequencing (RIP-seq), and the diversity of RNA species identified su
242 itation coupled with genome-wide sequencing (RIP-Seq) analysis revealed significant LIN28 binding wit
244 ratio is lower in islets from islet-specific RIP-iPLA2beta transgenic mice, whereas islets from globa
246 First, we show that recombinant Spiroplasma RIP catalyzes depurination of 28S rRNAs in a cell-free a
247 is cell death pathway requires an N-terminal RIP homotypic interaction motif (RHIM) within R1, acting
249 e neurons have been limited by the fact that RIP expression is predominantly found in pancreatic beta
253 n of the genome and methylome suggested that RIP and DNA methylation combinatorially maintain G. sine
256 t assays (RNA-EMSA) were used to confirm the RIP results and demonstrate that the TZF domain of AtC3H
257 onstructs encoding a region encompassing the RIP-RIP domain or a region spanning the RRM domain of OR
258 imply that the induction of diabetes in the RIP-B7.1 model is critically dependent on TLR3 and MyD88
260 decline in functional beta cell mass in the RIP-DTR mouse, a model of hyperglycemia resulting from d
263 herited retinal degeneration, suggesting the RIP kinase pathway as a potential target to protect cone
266 Second, light inhibits pumping through the RIP-I1-MC neuron polysynaptic circuit, in which an inhib
267 x manifested this function by binding to the RIP homotypic interaction motif (RHIM) domains of TRIF a
268 contain a motif with some resemblance to the RIP Homotypic Interaction Motif (RHIM), a domain found i
270 courage its incorporation, together with the RIP competition assay, into existing target prediction a
274 ation in Irbp(-/-) mice, implicating the TNF-RIP pathway as a potential therapeutic target to prevent
275 SRF activated RIP II, and SRF binding to RIP II and the exon 5-encoded 64-aa subdomain of SRF was
276 concentration down-regulated SRF binding to RIP II SRE, and this down-regulation was associated with
279 ngle-copy MgDNMT gene made it susceptible to RIP, resulting in complete loss of cytosine methylation
280 Type 2 ribosome-inactivating protein toxins (RIP-II toxins) were enriched and purified prior to enzym
281 unique complex that not only contains TRAF2, RIP, and IKKalpha/beta/gamma but also CARMA1, MALT1, BCL
283 R and EGFR, respectively, were used to treat RIP-Tag2 transgenic mice bearing advanced multifocal PNE
286 sis, but little is known about how these two RIP kinases mediate this process, although reactive oxyg
287 factor-88 (MyD88), and most of the wild-type RIP-B7.1 mice housed under normal conditions remained di
288 A mice, a situation phenocopied in wild-type RIP-mOVA mice treated with the selective Syk inhibitor R
290 ndent recognition of homology that underlies RIP and, potentially, other processes where sequence-spe
291 efensive symbiont and suggests an underlying RIP-dependent mechanism in Spiroplasma-mediated defense.
292 or transgene was specifically expressed upon RIP-specific Cre recombination using a RIP-Cre line firs
294 oimmune destruction of islet isografts using RIP-LCMV mice expressing a lymphocytic choriomeningitis
295 into the structural changes that occur when RIP kinases are triggered to execute different signaling
296 d type 2 RIPs, consisting of an A chain with RIP properties covalently linked to a B chain with lecti
297 signal of rRNA depurination consistent with RIP-dependent modification and large decreases in the pr
299 in the pancreatic beta-cells (arf-bp1(FL/Y)/RIP-cre) were viable and displayed no obvious abnormalit
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