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1 is with an efficacy similar to inhibition of RNA polymerase.
2 s, YonO is a highly processive DNA-dependent RNA polymerase.
3 rase I for protein-protein interactions with RNA polymerase.
4 n of nsp14 with the low-fidelity nsp12 viral RNA polymerase.
5 poI-CTD are involved in the interaction with RNA polymerase.
6 ed sigma subunits of plastid-encoded plastid RNA polymerase.
7 nonical rifampin target, the beta subunit of RNA polymerase.
8 as a secondary function of an RNA-dependent RNA polymerase.
9 ion, the methyltransferase and RNA-dependent RNA polymerase.
10 action between bacterial topoisomerase I and RNA polymerase.
11 rtially reflects an interaction of Top1 with RNA polymerase.
12 end is responsible for the interaction with RNA polymerase.
13 -induced nucleosome intermediates using only RNA Polymerase.
14 s II fructose bisphosphate aldolase, but not RNA polymerase.
15 rimental measurements of the distribution of RNA polymerases.
16 vity and fidelity of archaeal and eukaryotic RNA polymerases.
17 ut remarkably similar to viral RNA-dependent RNA polymerases.
18 d ability of PcrA/UvrD to bind and backtrack RNA polymerase (1,2) might be relevant to these function
21 We found that transcription initiation by RNA polymerase 2 resulted in confinement of the mRNA-pro
22 localize at gene promoters containing paused RNA polymerase 2, and Integrator similarly regulates neu
23 ke etnangien, gladiolin was found to inhibit RNA polymerase, a validated drug target in M. tuberculos
24 e wide and profile the enzymatic activity of RNA polymerase across various loci and following experim
25 We finish with a systematic comparison of RNA Polymerase activity at promoter versus non-promoter
28 tein expression 5- to 10-fold compared to T7 RNA polymerase alone while enhancing reovirus rescue fro
29 sing enzymes, including a DNA polymerase, an RNA polymerase and a DNA ligase, to use Fe2+ in place of
30 Left unchecked, this causes titration of RNA polymerase and a global downshift in host gene expre
31 r named sigma(S) (RpoS) that associates with RNA polymerase and controls the expression of numerous g
33 itional detection of the viral DNA-dependent RNA polymerase and intermediate and late transcription f
40 ts of RNAs produced by different chloroplast RNA polymerases and differs from the pattern of RNA foun
41 nal pausing and lead to conflicts with other RNA polymerases and replication in bacteria and eukaryot
42 ation of SeqKernel to inferring phylogeny on RNA polymerases and show that it performs as well as met
43 -coil is a docking site for sigma factors on RNA polymerase, and evidence is presented that the bindi
44 sigma factor to prevent its association with RNA polymerase, and instead functions to inhibit sigma(F
45 2, which associates with the plastid-encoded RNA polymerase, and is essential for inducing the plasto
48 The PB2 subunit of the viral heterotrimeric RNA polymerase binds the cap structure of cellular pre-m
52 CO2 Unlike the photosynthetic complexes, the RNA polymerase complex and ribosomes were produced in hi
55 ed and replicated by the viral RNA-dependent RNA polymerase, composed of the subunits PA, PB1, and PB
59 keeps the nascent transcription rates of its RNA polymerases constant and increases mRNA stability.
60 ion of the nonessential omega-subunit of the RNA polymerase core in the DeltarpoZ strain of the model
63 at recognizes a specific DNA sequence and an RNA polymerase domain that catalyzes RNA polymerization.
64 tein interaction between topoisomerase I and RNA polymerase during stress response of mycobacteria.
65 rface regions that could potentially prevent RNA polymerase from docking to the ribosome.Under condit
67 tified adaptive point mutations in the viral RNA polymerase gene A24R and, surprisingly, found that o
68 tinct mutations were identified in the viral RNA polymerase gene A24R, which seem to act through diff
70 genes (TCOF1, POLR1C and POLR1D) involved in RNA polymerase I (Pol I) transcription account for more
71 tudy reveals that the selective inhibitor of RNA polymerase I (Pol I) transcription, CX-5461, effecti
73 how that nucleolar SmgGDS interacts with the RNA polymerase I transcription factor upstream binding f
75 f the polymerase I and SL1 complexes and the RNA polymerase I-specific transcription initiation facto
79 te the degradation of Rpb1, a subunit of the RNA polymerase II (Pol II) complex, and therefore hamper
80 n (ChIP) and chemical inhibitor studies that RNA polymerase II (Pol II) elongation is important for e
81 facilitate ubiquitylation and degradation of RNA polymerase II (pol II) in response to multiple stimu
85 minal domain (CTD) of the largest subunit of RNA polymerase II (Pol II) orchestrates dynamic recruitm
88 Gene expression in metazoans is regulated by RNA polymerase II (Pol II) promoter-proximal pausing and
91 iption is regulated at many steps, including RNA polymerase II (Pol II) recruitment, transcription in
92 tory step in gene expression, which requires RNA polymerase II (pol II) to escape promoter proximal p
96 tisense RNAs are a mechanistic by-product of RNA polymerase II (Pol II) transcription or biologically
98 find that 6mA is exclusively associated with RNA polymerase II (Pol II)-transcribed genes, but is not
103 (ChIP) studies illustrated that M inhibited RNA polymerase II (RNAP II) recruitment to gene promoter
104 ssociated with genes actively transcribed by RNA polymerase II (RNAPII) and is catalyzed by Saccharom
105 nt and the accumulation of P-TEFb-associated RNA polymerase II (RNAPII) C-terminal domain (CTD)-Ser7
106 nitiation and regulation of transcription by RNA polymerase II (RNAPII) in eukaryotes rely on the tra
107 transcript elongation of subsets of genes by RNA polymerase II (RNAPII) in the chromatin context.
111 7, regulates the mRNA elongation capacity of RNA polymerase II (RNAPII) through controlling the nucle
116 ortem brain, and pharmacologic modulation of RNA polymerase II activity altered repetitive element ex
118 lement expression positively correlated with RNA polymerase II activity in postmortem brain, and phar
119 einitiation complex (PIC), which consists of RNA polymerase II and general transcription factors.
122 ntified transcriptome-wide binding sites for RNA polymerase II and the exosome cofactors Mtr4 (TRAMP
123 ive viral transcription by focal assembly of RNA polymerase II around Kaposi's sarcoma-associated her
125 suppressed the initiation and elongation of RNA polymerase II at active genes genome-wide, with pron
126 mine the first room-temperature structure of RNA polymerase II at high resolution, revealing new stru
129 al factories" decreased the pool of cellular RNA polymerase II available for cellular gene transcript
130 In addition, through its interaction with RNA Polymerase II C-terminal domain (CTD) and affecting
132 of higher-order chromatin structure data and RNA polymerase II ChIA-PET data from MCF-7 cells did not
136 ive elongation factor (NELF) associates with RNA polymerase II during early elongation and causes RNA
137 troller for transcription activation through RNA polymerase II elongation at a subset of genomic piRN
138 Moreover, we demonstrate that altering the RNA polymerase II elongation rate in either direction co
141 n cryo-electron microscopy map of a Mediator-RNA polymerase II holoenzyme reveals that changes in the
145 matin occupancy of serine 2-unphosphorylated RNA polymerase II is increased, and that of topoisomeras
146 finding revealed that the exosomes increase RNA polymerase II loading onto the HIV-1 promoter in the
150 tome profiling, chromatin accessibility, and RNA polymerase II occupancy demonstrate that BTBD18 faci
152 chromatin immunoprecipitation (ChIP) assays RNA polymerase II occupancy of SALL4 gene, as a function
153 n be activated by decreasing the duration of RNA polymerase II pausing in the promoter-proximal regio
156 sses such as transcription factor occupancy, RNA polymerase II recruitment and initiation, nascent tr
157 pho-p65 or phospho-CREB and CBP bindings and RNA polymerase II recruitment to these promoters in mesa
160 e beta-tubulin (BenA), calmodulin (CaM), and RNA polymerase II second largest subunit (RPB2) genes.
161 increased binding of total and phospho-Ser2 RNA polymerase II specifically at the intron retained un
162 revisiae Spt6 binds the linker region of the RNA polymerase II subunit Rpb1 rather than the expected
165 based mutagenesis reduced the recruitment of RNA polymerase II to ENL-target genes, leading to the su
166 tion of DNA replication per se or loading of RNA polymerase II to late promoters and subsequent reduc
167 merase II during early elongation and causes RNA polymerase II to pause in the promoter-proximal regi
168 in reduced binding of actively transcribing RNA polymerase II to the endogenous Asc gene, resulting
169 eneral cofactor required for essentially all RNA polymerase II transcription and is not consistent wi
172 d TFIID are alternative factors that promote RNA polymerase II transcription, with about 10% of genes
173 ve genes and disrupted recruitment of active RNA polymerase II, a property shared with pan-BETis that
174 to form mediator complexes, phosphorylating RNA polymerase II, and by its intrinsic histone acetyltr
175 that both enhancer classes are enriched for RNA Polymerase II, CBP, and architectural proteins but t
176 bed with 12 pure proteins (80 polypeptides): RNA polymerase II, six general transcription factors, TF
177 assembly of large protein complexes, such as RNA polymerase II, small nucleolar ribonucleoproteins an
179 function of VIP proteins, components of the RNA polymerase II-associated factor 1 complex (Paf1c).
198 tRNAs, and other transcripts synthesized by RNA polymerase III and facilitates their maturation, whi
202 We selected the BRF1 gene, which encodes an RNA polymerase III transcription initiation factor subun
203 of retrotransposons that are transcribed by RNA polymerase III, thus generating exclusively noncodin
204 of polyglutamine, MOAG-2/LIR-3 regulates the RNA polymerase III-associated transcription of small non
205 ncing, SINE-seq), which selectively profiles RNA Polymerase III-derived SINE RNA, thereby identifying
206 t ER was associated with a large fraction of RNA polymerase III-transcribed tRNA genes, independent o
208 m of interaction between topoisomerase I and RNA polymerase in Mycobacterium tuberculosis and Mycobac
209 s are transcribed by the viral RNA-dependent RNA polymerase in the cell nucleus before being exported
210 t can be recapitulated by RNase treatment or RNA polymerase inhibition - and cause defects in heteroc
212 may be a frequent by-product of promiscuous RNA polymerase initiation at accessible chromatin and is
213 s a Tudor-like fold that is similar to other RNA polymerase interaction domains, including that of th
214 that the release of promoter-proximal paused RNA polymerase into elongation functions as a critical s
217 at the PB2 627 domain of the influenza virus RNA polymerase is not involved in core catalytic functio
218 inhibits a subset of metalloenzymes and that RNA polymerase is unlikely to be the primary target.
219 ost het-siRNAs depends on the plant-specific RNA polymerase IV (Pol IV), and ARGONAUTE4 (AGO4) is a m
220 lutinin-neuraminidase (HN) and RNA-dependent RNA polymerase (L) genes of the PIV5 genome [PIV5-RSV-F
221 P) is the main and essential cofactor of the RNA polymerase (L) of non-segmented, negative-strand RNA
222 rus 1) with a highly divergent RNA-dependent RNA polymerase missed by conventional BLAST searches, an
223 6 x 10(-6)), and human mitochondrial POLRMT (RNA polymerase mitochondrial) (2 x 10(-5)) indicate high
224 Experimentally, we could detect small viral RNA polymerase molecules, distributed randomly among bin
228 rase I (TopoI-CTDs) and the beta' subunit of RNA polymerase of M. smegmatis in the absence of DNA.
229 erring steric hindrance on the RNA-dependent RNA polymerases of diverse positive-stranded RNA viruses
230 dentified 12 primary miRNAs with significant RNA polymerase pausing alterations after JQ1 treatment;
233 r profile suggesting their capacity to stall RNA polymerase (Pol) II and trigger transcription-couple
235 phospho-Ser 2 carboxy-terminal domain (CTD) RNA polymerase (Pol) II formation on the promoters of IR
236 MAF1 is a conserved negative regulator of RNA polymerase (pol) III and intracellular lipid homeost
238 rkable in having two additional multisubunit RNA polymerases, Pol IV and Pol V, which synthesize nonc
239 ry in humans consists of three proteins: the RNA polymerase (POLRMT) and two accessory factors, trans
242 n Nicotiana attenuata, specific RNA-directed RNA polymerase (RdR1) and the Dicer-like (DCL3 and DCL4)
243 and-mouth disease virus (FMDV) RNA-dependent RNA polymerase (RdRp) (3D(pol)) catalyzes viral RNA synt
244 ication of the viral siRNAs by RNA-dependent RNA polymerase (RdRP) 1 (RDR1) and RDR6 and of the endog
245 poration fidelity of the viral RNA-dependent RNA polymerase (RdRp) is important for maintaining funct
246 nds the COL1A2 enhancer and is essential for RNA polymerase recruitment, without affecting JunB bindi
247 the cores of both ribosomal subunits enhance RNA polymerase ribozyme (RPR) function, as do derived ho
250 ide-analog inhibitor that inhibits bacterial RNA polymerase (RNAP) and exhibits antibacterial activit
252 ought to involve direct interactions between RNA polymerase (RNAP) and the translational machinery.
253 s an accessible rut site promotes pausing of RNA polymerase (RNAP) at a single Rho-dependent terminat
258 s globally regulate transcription by binding RNA polymerase (RNAP) holoenzyme and competing with prom
259 ss I TAC containing a CAP dimer, a sigma(70)-RNA polymerase (RNAP) holoenzyme, a complete class I CAP
260 paratus is closely related to the eukaryotic RNA polymerase (RNAP) II system, while archaeal genomes
263 tistep transcription process, the elongating RNA polymerase (RNAP) is dislodged from the DNA template
266 perinfection by coliphage lambda by stalling RNA polymerase (RNAP) translocation specifically on lamb
267 We demonstrate that MglA-SspA, which binds RNA polymerase (RNAP), also interacts with the C-termina
268 hich results from the RpoB S531L mutation in RNA polymerase (RNAP), has become a growing problem worl
269 te transcription via direct interaction with RNA polymerase (RNAP), we deep sequenced an E. coli geno
274 transcription initiation by Escherichia coli RNA polymerase (RNAP; alpha2betabeta'omegasigma(70)), we
275 The secondary channel (SC) of multisubunit RNA polymerases (RNAPs) allows access to the active site
282 of the nuclear encoded genes for chloroplast RNA polymerases RPOTp and RPOTmp suggests that the hormo
284 sage suppression of essential genes encoding RNA polymerase subunits and chromosome cohesion complex
285 l domain (NGN) binds at the central cleft of RNA polymerase surrounded by the beta' clamp helices, th
286 tural protein 5B (NS5B) is the RNA-dependent RNA polymerase that catalyzes replication of the hepatit
288 present a generative, probabilistic model of RNA polymerase that fully describes loading, initiation,
289 by providing examples of (i) selection of T7 RNA polymerases that recognize orthogonal promoters and
290 re we determined the crystal structure of an RNA polymerase, the bacterial enzyme from Thermus thermo
291 omotes transcription mediated by all nuclear RNA polymerases, thereby acting as a positive modifier o
292 from the NusG family bind to the elongating RNA polymerase to enable synthesis of long RNAs in all d
294 heterogeneity features predicted activity of RNA polymerase transcription (AUC = 0.62, p=0.03) and in
295 non-template strand reduces the yield of T7 RNA polymerase transcription by more than an order of ma
296 g ribozymes and tRNA could be expressed from RNA polymerase type II (pol II) promoters such as generi
297 ector portion of the RdDM pathway, including RNA POLYMERASE V (POL V), DOMAINS REARRANGED METHYLTRANS
298 on DOMAINS REARRANGED METHYLASE 2 (DRM2) and RNA polymerase V (Pol V), two main actors of RNA-directe
299 omes at several tested loci, indicating that RNA polymerase V-related functions are impaired in the p
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