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1 , which contains a conserved double-stranded RNA binding domain.
2 makes up almost the entirety of APO1, is an RNA binding domain.
3 cognition Motif (RRM) is the most ubiquitous RNA binding domain.
4 e common Cys(3)His zinc finger polyadenosine RNA binding domain.
5 nuclear pore protein Nup153 contains a novel RNA binding domain.
6 sociates relatively robustly with the Nup153 RNA binding domain.
7 -dimensional structure of a highly conserved RNA binding domain.
8 eat domains on either side of the C-terminal RNA binding domain.
9 eta is specifically targeted to mRNAs by its RNA binding domain.
10 ilar CCCH zinc fingers that form the primary RNA binding domain.
11 protein kinase R (PKR) independently of its RNA-binding domain.
12 was identified as a putative double-stranded RNA-binding domain.
13 ession through interactions with the Pumilio RNA-binding domain.
14 inal RNMT-activating domain and a C-terminal RNA-binding domain.
15 rginine-rich region, which overlaps with its RNA-binding domain.
16 to a response regulator (EutV) containing a RNA-binding domain.
17 K51A substitution in the Tat double-stranded RNA-binding domain.
18 ing that DUF860 is a previously unrecognized RNA-binding domain.
19 a novel Sec incorporation domain and an L7Ae RNA-binding domain.
20 omoting SECIS and eEFSec binding to the SBP2 RNA-binding domain.
21 hback) if Nanos is tethered via an exogenous RNA-binding domain.
22 on in humans, lies within a novel, bipartite RNA-binding domain.
23 ole of the N-terminal domain as an accessory RNA-binding domain.
24 otease activity or by the positively charged RNA-binding domain.
25 s suggest that EIAV Rev utilizes a bipartite RNA-binding domain.
26 as HicA (COG1724) contains a double-stranded RNA-binding domain.
27 aptation of both zinc fingers within the TTP RNA-binding domain.
28 through its RS domains but also through its RNA-binding domain.
29 RMs), the most prevalent class of eukaryotic RNA-binding domain.
30 1 US11 is a RNA-binding protein with a novel RNA-binding domain.
31 icing factors, in that they contain a single RNA-binding domain.
32 as identified within a 56 amino acid residue RNA-binding domain.
33 dopsis PUF protein that contains an atypical RNA-binding domain.
34 rotein contains two structurally independent RNA binding domains.
35 partners by the combinatorial use of several RNA binding domains.
36 one fold that is similar to that of RNP-type RNA binding domains.
37 motif (RRM), which is one of the most common RNA binding domains.
38 lectivity by ADAR1 and other proteins with Z-RNA binding domains.
39 PH (RPH) domains, one PNPase domain, and two RNA binding domains.
40 ins (RBPs), many of which lack characterized RNA binding domains.
41 n bind engineered proteins fused to specific RNA binding domains.
42 h proteins have CCCH type tandem zinc finger RNA-binding domains.
43 ences appended to their conserved PUF repeat RNA-binding domains.
44 e separate from the two pairs of zinc-finger RNA-binding domains.
45 Dicer proteins is related to double-stranded RNA-binding domains.
46 in that harbors two KH-type and one RGG-type RNA-binding domains.
47 e Dicer ribonuclease III and double-stranded RNA-binding domains.
48 ally based on a number of well-characterised RNA-binding domains.
49 st a therapeutic potential for SRSF1 and its RNA-binding domains.
50 ribosomal proteins via remodelling of their RNA-binding domains.
51 intramolecular interactions between the two RNA-binding domains.
52 to phosphorylate eIF2alpha even without its RNA-binding domains.
53 localization of oskar mRNA requires Staufen RNA binding domain 2, whereas prospero mRNA localization
55 alization mediated the binding of Miranda to RNA binding domain 5, suggesting that different Staufen
56 (zmSRp30, zmSRp31, and zmSRp32) contains two RNA binding domains, a signature sequence SWQDLKD, and a
57 lly, we also detect several proteins with an RNA-binding domain abundant in Apicomplexans (RAP domain
58 ray of octatricopeptide repeats (OPR) and an RNA-binding domain abundant in apicomplexans (RAP) domai
59 an unusual RNA-binding domain named RAP (for RNA-binding domain abundant in Apicomplexans), shared by
62 ino acids), as well as either its N-terminal RNA-binding domain (amino acids 1 to 93) or C-terminal d
63 nspecific RNA binding by the double-stranded RNA binding domain, an interaction that is essential for
64 N proteins contain two structurally distinct RNA-binding domains, an unusual characteristic among RNA
65 Rsr is composed of two domains: a helical RNA binding domain and a mixed "von Willebrand factor A-
66 rements for recognition by the high affinity RNA binding domain and an independent N-terminal RNA int
67 e PKR constructs lacking the double-stranded RNA binding domain and bind to a basic region adjacent t
70 valent interactions with the double stranded RNA binding domain and the basic region underlie the abi
71 he individually determined structures of the RNA binding domain and the effector domain from non-H5N1
72 istance distribution functions of the U2AF65 RNA binding domain and those either previously observed
73 ition of the small RNA substrate by multiple RNA binding domains and the methyltransferase domain in
77 ecific inhibition of translation through its RNA-binding domain and a region in the C-terminal domain
79 lanogaster demonstrates how a well-conserved RNA-binding domain and cognate binding sequence have bee
82 DLC-1 directly binds to FBF-2 outside of the RNA-binding domain and promotes FBF-2 localization and f
83 and contained nucleolar localization signal, RNA-binding domain and several phosphorylation sites.
84 d by RNA-binding proteins that consist of an RNA-binding domain and two reiterated phosphotransferase
85 6 shares a domain structure containing three RNA-binding domains and a divergent domain of unknown fu
87 losses and acquisitions of diverse putative RNA-binding domains and the acquisition of an Archaea-li
88 erminal region of the protein that lacks the RNA-binding domains and uridyltransferase activity of th
90 ction are homodimerization of its kinase and RNA-binding domains, and autophosphorylation at the resi
91 ng antiviral properties of this protein, the RNA-binding domains, and the minimal effects observed on
92 cture, with both zinc knuckle and cold shock RNA-binding domains, and were originally identified as r
93 other topoisomerases, contains a distinctive RNA-binding domain; and deletion of this domain diminish
95 Highly conserved amino acids of the duplex RNA-binding domain are required for processivity and nuc
96 he distal alpha-helix of the double-stranded RNA-binding domains are necessary to engage structural f
99 virions we identified the second of the two RNA-binding domains as a principal determinant of MHV pa
100 oteins within these bodies contain KH or RRM RNA-binding domains as well as low complexity (LC) seque
102 analysis indicates that the two double stand RNA binding domains at the N-terminus of RHA are respons
103 o alpha-beta-beta-beta-alpha double-stranded RNA-binding domains at the N terminus and repeated argin
105 minimal RNA fragment that are key to Nup153 RNA-binding domain binding and demonstrated that the bin
107 estigated by NMR the dynamics of the CstF-64 RNA-binding domain, both free and bound to two GU-rich R
108 ristics, the X-ray structure of the U2AF(65) RNA binding domain bound to a Py tract composed of seven
109 ined four structures of an extended U2AF(65)-RNA-binding domain bound to Py-tract oligonucleotides at
110 RSF1 deletion mutants containing the protein RNA-binding domains but not the arginine serine-rich act
111 tructure, including the presence of putative RNA-binding domains, but to what extent they provide fun
112 family of RNA-binding proteins share similar RNA-binding domains by which they regulate the translati
113 in Dim2, providing another example where an RNA-binding domain can be repurposed for protein interac
115 substrate and that removal of its KH and S1 RNA-binding domains can reduce enzyme processivity witho
116 Both the N-terminal domain (containing an RNA-binding domain characterized by the presence of five
117 ons, we detected a divergent double-stranded RNA-binding domain coinciding with the DUF283 of Dicer.
119 ally to mRNA targets using a single-stranded RNA-binding domain comprising eight Pumilio (PUM) repeat
120 e mRNA led to the conclusion that the Nup153 RNA binding domain confers a general affinity for single
122 Here, we have used analogues of the TTP RNA-binding domain containing specific tryptophan substi
123 rotein contains two structurally independent RNA binding domains, designated the N-terminal domain (N
124 ere, the solution conformation of the U2AF65 RNA binding domain determined using small angle x-ray sc
125 RNA intermediate, and mutations in the pTRS1 RNA binding domain did not affect PKR binding or inhibit
126 located in a conserved TPNK sequence in the RNA binding domain, did not restore viability and histon
128 RNA recognition to decipher how this unique RNA binding domain discriminates between potential targe
129 es, both of which required a double-stranded RNA-binding domain (dsRBD) and a functional helicase mot
130 specific interactions by its double-stranded RNA-binding domain (dsRBD) helix alpha1 to the tetraloop
131 odular enzymes with multiple double-stranded RNA binding domains (dsRBDs) and a catalytic domain.
134 specific protein TRBP, whose double-stranded RNA-binding domains (dsRBDs) interact with the A-form ge
135 affinities of dsRNAs to PKR double-stranded RNA-binding domains (dsRBDs) were determined by isotherm
138 associates with E3 ubiquitin ligases bearing RNA-binding domains, Dzip3 and Mex3b, as well as with th
142 The CRM domain is a recently recognized RNA binding domain found in three group II intron splici
143 rming canonical eight-repeat crescent-shaped RNA-binding domains found in classical PUF proteins.
146 library of eight aptamers and corresponding RNA binding domains fused to partial fragments of fluore
149 w of an important member of the RRM class of RNA-binding domains highlights the role of alternative s
150 structure of a ternary complex of human SLBP RNA binding domain, human 3'hExo, and a 26-nucleotide SL
151 RGG/RG domains are the second most common RNA binding domain in the human genome, yet their RNA-bi
153 The C-proximal motif within the N-terminal RNA binding domain in wheat eIF4B is required for intera
154 ins are the largest class of single-stranded RNA binding domains in the human proteome and play impor
155 recognition motif (RRM) is the most abundant RNA-binding domain in eukaryotes, and it plays versatile
157 e ASCH superfamily are likely to function as RNA-binding domains in contexts related to coactivation,
160 c analyses revealed that the single-stranded RNA-binding domain is exclusively found in Prp3 ortholog
161 genes and that the thyroid hormone receptor RNA-binding domain is important for this enhancement.
162 e protein to p62/SQSTM1, suggesting that the RNA-binding domain is responsible for the subcellular lo
165 c finger domain, which is the protein's main RNA binding domain, is most important for SG recruitment
166 tein), which contains three double-stranded, RNA-binding domains, is an integral component of a Dicer
167 e domain of RNase R, devoid of all canonical RNA-binding domains, is sufficient for this activity.
168 antages over classic methods for determining RNA-binding domains: it produces proteome-wide, high-res
170 two zinc knuckles and between the N-terminal RNA binding domains (KH and QUA2 domains) and the first
171 ine the roles of selected amino acids in the RNA binding domain, known as the tandem zinc finger (TZF
172 ge benchmark of 212 RNA binding and 6761 non-RNA binding domains (leave-one-out cross-validation).
174 hile intensity of the CLIP signal, number of RNA-Binding domains, location of the binding site on the
177 ndent termination functions of specific NusA-RNA binding domain mutants revealed an existence of Rho-
178 xpression through the function of an unusual RNA-binding domain named RAP (for RNA-binding domain abu
179 data, we were able to construct an isolated RNA-binding domain (Nop-RBD) that folds correctly as dem
181 er, is abolished by a mutation either in the RNA binding domain of 3CD(pro), 3C(pro)R84S/I86A, or by
182 step toward RNA recognition, we utilized the RNA binding domain of argonaute, implicated in RNA inter
188 A genetically encoded system based on the RNA binding domain of the Pumilio and FBF (PUF) proteins
189 pecific high-affinity interaction between an RNA binding domain of trimeric N and the panhandle is re
190 our results reveal that the N-terminal Z-DNA/RNA binding domain of vaccinia virulence factor E3, whic
191 te of GRIA2 Furthermore, the double-stranded RNA binding domains of ADAR3 are required for repression
193 sid (N) protein that harbors two independent RNA binding domains of known structure, but poorly chara
194 somal particles requires the double-stranded RNA binding domains of NF90, while depletion of NF45 and
199 by mutation of a key residue in the putative RNA-binding domain of AID impairs recruitment of AID to
200 e discovery of a cyclic peptide mimic of the RNA-binding domain of BIV Tat protein based on a designe
202 longin-binding domain of VHL with a specific RNA-binding domain of HuR (RRM1) is important for the de
203 Here, we present crystal structures of the RNA-binding domain of Lassa virus NP in complex with ssR
204 de-acridine conjugates using portions of the RNA-binding domain of N protein (11- and 22- residue pep
206 nce coding regions and is facilitated by the RNA-binding domain of NS1, which can associate with ER m
210 we report the crystal structure of the DNA-/RNA-binding domain of Pur-alpha in complex with ssDNA.
213 panied by phylum-specific alterations in the RNA-binding domain of Srp54, the SRP protein subunit tha
214 cally dependent on the third double-stranded RNA-binding domain of Staufen1 and shuttling of Staufen1
215 result re-establishes the RRM as the primary RNA-binding domain of the hnRNP C tetramer and provides
216 A with an affinity comparable to that of the RNA-binding domain of the Tat protein and inhibited prot
217 ACT and TRBP suggest that the two N-terminal RNA-binding domains of each protein confer the observed
218 ments that correspond to the two independent RNA-binding domains of FMRP, in addition to the binding
219 mine whether the observed variability in the RNA-binding domains of four plant PUFs results in a pref
220 icing factors by combining sequence-specific RNA-binding domains of human Pumilio1 with functional do
222 tion of N was shown to depend on both of the RNA-binding domains of N, as well as on the serine- and
224 n calorimetry experiments confirmed that the RNA-binding domains of PKR are sufficient and necessary
226 s work describes the interactions of the two RNA-binding domains of the nucleocapsid protein of a mod
227 port the hypothesis that the double-stranded RNA-binding domains of this family of proteins are impor
228 t the altered amino acids are located in the RNA-binding domains of two complex THOC2 structures, pot
229 ding of dsRNA to two dsRBDs (double-stranded RNA binding domains) of PKR modulates its own kinase act
232 nding proteins (RBPs): i.e. those with known RNA binding domains or otherwise implicated in RNA funct
233 oreover, Top3beta mutants lacking either its RNA-binding domain or catalytic residue fail to promote
234 unctional category 'RNA-binding', have known RNA-binding domains or have orthologs identified in mamm
235 etry, we have identified the double-stranded RNA-binding domain protein Blanks to be an siRNA- and ds
236 ear RNase III Drosha and the double-stranded RNA-binding domain protein DGCR8 (DiGeorge syndrome crit
239 terogenous ribonucleoprotein A18 (hnRNP A18) RNA Binding Domain (RBD) and the arginine, glycine (RGG)
240 mplex between a fragment of 23S rRNA and the RNA binding domain (RBD) of the Bacillus subtilis DbpA p
242 To further define the boundaries of the RNA binding domain (RBD), several peptides were synthesi
245 nal protein with two distinctive domains, an RNA-binding domain (RBD) and an effector domain (ED) sep
246 ry site/segment (IRES)-the question of which RNA-binding domain (RBD) binds to which sites on the IRE
247 ues from both chains, namely residues in the RNA-binding domain (RBD) from one chain, and residues in
251 6 A in the free RNA, to 58 A when N-terminal RNA binding domains (RBD1) of U1A are bound, and to 53 A
252 In addition, OV20.0 binds directly to the RNA binding domains (RBDs) of PKR, and this interaction
253 hibitory interactions between the kinase and RNA binding domains (RBDs), but the structural details o
256 l region of the protein contains four tandem RNA-binding domains (RBDs), of which the first two are r
259 ical separation of the Sec incorporation and RNA-binding domains revealed that they are able to funct
260 ut fungi, with divergent and distinctive PUF RNA binding domains, RNA-recognition motifs (RRMs), and
262 ft assays using a bacterially expressed PUM2 RNA binding domain showed specific binding using wild ty
266 N-terminal Nab2 domain is distinct from its RNA binding domains suggesting Nab2 could bind Gfd1 and
267 86% success rate in its application to SCOP RNA binding domain superfamily (Structural Classificatio
268 lity shift assays using the recombinant TEP1 RNA-binding domain (TEP1-RBD) demonstrate that it binds
269 cognition specificity and define a novel p65 RNA binding domain that initiates telomerase holoenyzme
270 ' end of the exon specify FMRP's RGG box, an RNA binding domain that interacts with G-quartet motifs.
272 ain, wheat eIF4B contains a novel N-terminal RNA binding domain that requires a short, lysine-rich co
273 trolled Mre11 abundance through a C-terminal RNA binding domain that selectively and directly binds M
274 idine Tract Binding Protein (PTBP1) has four RNA binding domains that each binds a short pyrimidine e
275 example to the repertoire of plant-specific RNA binding domains that emerged as a product of nuclear
276 ified and mutated several residues in the S1 RNA-binding domain that are important for interacting wi
277 ivity are mediated by sequences flanking the RNA-binding domain that bind specific molecular partners
278 ontains the PUA domain, a recently described RNA-binding domain that is found in several tRNA and rRN
279 in with a THUMP domain, an ancient predicted RNA-binding domain that is widespread in all kingdoms of
282 ine in a conserved TPNK sequence in the SLBP RNA binding domain, thereby dissociating SLBP from the h
283 dopsis Fip1 protein were found to contain an RNA-binding domain; this domain correlated with an intac
284 izes different surfaces of its alpha-helical RNA-binding domain to recognize several low-affinity bin
287 ncanonical poly(A) polymerase that lacks the RNA-binding domain typical of the canonical nuclear poly
289 (MHV), we constructed mutants in which each RNA-binding domain was replaced by its counterpart from
290 and RNA interactions of the wild-type U2AF65 RNA binding domain were compared with those of U2AF65 va
292 erved RNA recognition motif and a C-terminal RNA binding domain, wheat eIF4B contains a novel N-termi
293 PKR contains an N-terminal double-stranded RNA binding domain, which consists of two tandem double-
294 lian and viral mRNAs also interact with this RNA-binding domain with functional consequences to their
295 on, it correctly identified 31 of 75 unbound RNA-binding domains with 92% accuracy and 65% precision
296 e effector domain from non-H5N1 strains, the RNA binding domain within H5N1 NS1 exhibits modest struc
299 nstrate that its three previously elucidated RNA binding domains work together to provide eIF4F with
300 ch extends over a distance of 180 A from its RNA binding domain, wraps around the core domain consist
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